genome.fa.s13.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  139  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45495359--45495524	42	3.9	42	79	3	172	30	24	15	30	1.95
45502712--45502823	43	2.6	42	79	10	129	27	17	26	27	1.98
45504806--45504957	42	3.5	43	79	7	175	29	25	17	26	1.98
45506300--45506344	22	2.0	22	95	0	81	44	0	20	35	1.51
45521282--45521324	16	2.7	16	88	0	68	48	16	23	11	1.78
45521535--45521627	29	3.2	29	86	1	116	32	15	26	25	1.95
45530314--45530389	24	3.2	24	62	23	61	28	13	32	25	1.93
45530240--45530468	47	4.8	47	88	4	323	33	10	29	27	1.89
45530240--45530468	98	2.4	96	86	2	327	33	10	29	27	1.89
45530455--45530545	46	2.0	46	88	0	137	34	6	30	28	1.83
45544261--45544350	25	3.6	25	65	14	67	25	17	20	36	1.94
45544258--45544355	51	1.9	50	85	2	133	26	16	20	36	1.93
45547779--45547885	47	2.2	48	88	1	153	37	17	15	28	1.91
45553424--45553451	14	2.0	14	100	0	56	21	7	35	35	1.81
45556521--45556777	40	6.5	40	81	7	267	24	23	27	24	2.00
45556521--45556781	80	3.3	80	84	3	312	24	23	27	24	2.00
45556521--45556745	120	1.9	121	86	6	323	24	24	28	23	2.00
45564705--45564961	40	6.5	40	82	7	276	24	24	27	24	2.00
45564705--45564965	80	3.3	80	84	3	321	24	23	27	23	2.00
45564705--45564929	120	1.9	121	87	6	332	24	24	28	23	2.00
45566334--45566701	183	2.0	184	89	2	562	29	19	14	36	1.92
45567591--45568090	154	3.2	155	77	8	439	29	19	19	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45568038--45568136	40	2.5	39	82	9	112	28	20	18	33	1.96
45567820--45568104	156	1.8	154	84	5	387	28	17	20	33	1.96
45568431--45568461	15	2.1	15	93	0	53	19	0	38	41	1.51
45568380--45568461	22	3.8	22	70	19	55	24	2	30	42	1.67
45568488--45568540	21	2.5	22	84	3	72	18	1	35	43	1.62
45568516--45568587	14	5.1	14	81	6	65	20	1	29	48	1.58
45568529--45568584	21	2.6	22	77	5	60	21	0	30	48	1.51
45568678--45568722	14	3.2	14	83	0	63	17	0	31	51	1.46
45569209--45569255	21	2.2	21	85	7	60	17	4	29	48	1.65
45569668--45569754	41	2.1	41	82	0	102	42	12	17	27	1.85
45570032--45570068	3	12.7	3	94	5	67	64	0	35	0	0.94
45576389--45576424	7	5.0	7	86	6	54	66	0	2	30	1.06
45576389--45576424	15	2.5	14	86	8	54	66	0	2	30	1.06
45576442--45576530	10	8.9	10	72	17	60	62	1	3	32	1.19
45576446--45576514	17	4.2	16	78	9	68	62	0	4	33	1.15
45576442--45576539	40	2.3	42	81	10	112	64	1	3	31	1.16
45576442--45576530	19	4.4	20	72	19	69	62	1	3	32	1.19
45576448--45576541	30	3.2	29	78	15	104	63	1	3	31	1.17
45576446--45576543	15	6.5	15	73	24	82	63	1	3	32	1.17
45578114--45578421	132	2.3	131	87	5	435	27	29	15	26	1.96
45578058--45578421	88	4.1	88	81	2	385	28	29	15	26	1.96
45578114--45578421	44	7.0	44	82	2	368	27	29	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45581956--45581980	12	2.1	12	100	0	50	32	16	16	36	1.90
45586595--45586633	18	2.2	18	95	0	69	23	25	10	41	1.86
45590539--45590587	14	3.6	13	89	8	71	44	0	12	42	1.41
45590545--45590605	27	2.3	26	83	8	79	40	0	14	44	1.46
45590611--45590653	10	4.3	10	82	11	61	20	6	2	69	1.23
45592811--45592896	45	1.9	44	86	6	120	32	27	15	24	1.95
45594904--45595013	33	3.3	34	82	9	129	40	14	0	45	1.45
45594897--45595013	34	3.7	33	84	7	145	40	16	0	43	1.48
45595055--45595135	34	2.3	35	85	6	103	48	23	2	25	1.64
45598566--45598850	156	1.8	155	84	4	396	28	17	20	33	1.95
45598784--45598882	40	2.5	39	82	9	112	28	20	18	33	1.96
45599177--45599207	15	2.1	15	93	0	53	19	0	38	41	1.51
45599126--45599207	22	3.8	22	70	19	55	24	2	30	42	1.67
45599234--45599286	21	2.5	22	84	3	72	18	1	35	43	1.62
45599262--45599333	14	5.1	14	81	6	65	20	1	29	48	1.58
45599275--45599330	21	2.6	22	77	5	60	21	0	30	48	1.51
45599424--45599468	14	3.2	14	83	0	63	17	0	31	51	1.46
45599956--45600002	21	2.2	21	85	7	60	17	4	29	48	1.65
45600417--45600503	41	2.1	41	82	0	102	42	12	17	27	1.85
45600781--45600817	3	12.7	3	94	5	67	64	0	35	0	0.94
45607144--45607179	7	5.0	7	86	6	54	66	0	2	30	1.06
45607144--45607179	15	2.5	14	86	8	54	66	0	2	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45607197--45607285	10	8.9	10	72	17	60	62	1	3	32	1.19
45607201--45607269	17	4.2	16	78	9	68	62	0	4	33	1.15
45607197--45607294	40	2.3	42	81	10	112	64	1	3	31	1.16
45607197--45607285	19	4.4	20	72	19	69	62	1	3	32	1.19
45607203--45607296	30	3.2	29	78	15	104	63	1	3	31	1.17
45607201--45607298	15	6.5	15	73	24	82	63	1	3	32	1.17
45608869--45609176	132	2.3	131	87	5	435	27	29	15	26	1.96
45608813--45609176	88	4.1	88	81	2	385	28	29	15	26	1.96
45608869--45609176	44	7.0	44	82	2	368	27	29	15	26	1.96
45612708--45612732	12	2.1	12	100	0	50	32	16	16	36	1.90
45621170--45621205	7	5.0	7	86	6	54	66	0	2	30	1.06
45621170--45621205	15	2.5	14	86	8	54	66	0	2	30	1.06
45621223--45621322	5	20.2	5	70	17	57	65	1	3	31	1.15
45621223--45621311	10	8.9	10	73	17	69	64	1	3	31	1.17
45621229--45621295	17	4.1	16	77	9	64	62	0	4	32	1.15
45621223--45621320	40	2.3	45	83	10	127	65	1	3	30	1.15
45621228--45621322	30	3.2	29	77	16	106	64	1	3	31	1.16
45621229--45621324	15	6.3	15	73	24	78	63	1	3	32	1.17
45626248--45626285	14	2.6	15	87	4	60	57	10	18	13	1.63
45629151--45629321	93	1.8	93	96	0	315	28	29	21	21	1.98
45629143--45629318	46	3.8	46	81	10	223	28	29	20	21	1.98
45630777--45630817	21	1.9	22	85	14	59	17	0	2	80	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45641473--45641599	43	3.0	44	74	13	122	36	23	14	25	1.93
45649828--45650010	47	3.9	47	94	1	312	29	30	9	30	1.88
45653772--45653886	40	2.9	40	89	0	140	26	29	21	22	1.99
45654191--45654269	29	2.7	29	86	5	106	27	32	15	24	1.95
45654317--45654343	12	2.2	12	100	0	54	40	37	14	7	1.74
45654274--45654386	55	2.1	55	100	0	226	30	35	14	19	1.91
45656272--45656350	37	2.1	37	90	0	122	25	31	18	24	1.98
45656469--45656992	47	11.1	47	93	2	881	29	30	8	31	1.88
45660748--45660859	39	2.9	40	84	5	131	25	29	21	23	1.99
45661167--45661245	29	2.7	29	86	5	106	27	32	15	24	1.95
45661250--45661360	54	2.1	54	96	3	206	31	34	14	19	1.92
45794186--45794308	55	2.2	56	88	2	176	26	12	28	33	1.92
45794186--45794308	28	4.4	28	90	2	176	26	12	28	33	1.92
45794211--45794321	28	4.0	27	90	3	116	28	11	26	33	1.91
45802410--45802502	28	3.4	28	95	1	161	25	10	29	34	1.90
45802410--45802515	28	3.9	27	90	3	106	28	10	26	34	1.89
45810028--45810129	42	2.4	43	78	6	109	27	23	19	29	1.98
45812014--45812042	12	2.4	12	100	0	58	37	10	6	44	1.65
45817193--45817231	18	2.2	18	95	0	69	23	25	10	41	1.86
45821135--45821183	14	3.6	13	89	8	71	44	0	12	42	1.41
45821141--45821201	27	2.3	26	83	8	79	40	0	14	44	1.46
45821207--45821249	10	4.3	10	82	11	61	20	6	2	69	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45823405--45823490	45	1.9	44	86	6	120	32	27	15	24	1.95
45825191--45825403	117	1.8	117	81	4	268	26	20	17	35	1.95
45825496--45825605	33	3.3	34	83	7	120	39	14	0	45	1.51
45825491--45825605	34	3.6	33	84	7	132	39	16	0	43	1.54
45825647--45825727	34	2.3	35	85	6	103	48	23	2	25	1.64
45829751--45829901	27	5.6	27	86	1	194	25	15	28	30	1.96
45829750--45829901	55	2.8	55	86	2	200	25	16	28	30	1.97
45829751--45829901	82	1.8	82	85	0	212	25	15	28	30	1.96
45833495--45833547	27	2.0	27	84	0	70	37	7	15	39	1.75
45836226--45836279	27	2.0	27	85	0	72	38	7	14	38	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332