genome.fa.s13.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  175  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57694359--57694427	25	2.8	25	86	4	86	26	21	20	31	1.98
57694471--57694515	13	3.5	13	75	0	54	44	4	22	28	1.72
57694497--57694546	26	2.0	26	84	11	68	52	4	14	30	1.59
57696753--57696820	29	2.4	29	85	2	93	17	36	25	20	1.94
57703655--57703786	48	2.8	48	92	0	219	18	17	31	32	1.94
57708684--57708865	40	4.6	40	91	2	278	25	28	23	23	2.00
57716699--57716914	40	5.4	40	88	2	303	25	28	21	24	1.99
57731521--57731651	46	2.8	46	83	4	165	25	19	30	23	1.98
57735783--57735842	30	2.0	30	86	0	84	40	8	23	28	1.83
57744027--57744177	27	5.6	27	86	1	194	25	15	28	30	1.96
57744026--57744177	55	2.8	55	86	2	200	25	16	28	30	1.97
57744027--57744177	82	1.8	82	85	0	212	25	15	28	30	1.96
57750636--57750765	39	3.3	40	81	2	147	36	18	13	31	1.89
57750763--57750790	10	2.8	10	100	0	56	50	10	0	39	1.37
57752523--57752560	20	1.9	20	88	0	58	5	2	31	60	1.33
57758887--57759106	40	5.7	40	85	7	267	25	21	27	25	2.00
57758887--57759113	39	5.8	39	85	7	239	25	21	27	25	1.99
57758887--57759139	117	2.2	116	80	7	273	26	21	26	25	1.99
57758938--57759139	40	5.2	40	81	10	188	26	20	26	26	1.99
57772296--57772393	27	3.5	28	90	2	135	26	13	28	31	1.94
57772324--57772406	27	3.0	27	87	5	96	30	12	25	32	1.92
57772296--57772407	28	4.0	27	83	6	98	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57780380--57780477	27	3.5	28	90	2	135	26	13	28	31	1.94
57780408--57780490	27	3.0	27	87	5	96	30	12	25	32	1.92
57780380--57780492	28	4.0	27	83	6	100	29	12	25	32	1.92
57802828--57802932	53	2.0	53	82	0	129	34	19	25	20	1.96
57810252--57810388	53	2.5	53	80	2	148	38	20	20	20	1.93
57818978--57819055	36	2.2	36	83	0	93	33	29	8	28	1.87
57824934--57825117	40	4.6	40	81	6	187	23	21	27	27	1.99
57825014--57825164	40	3.8	39	80	6	117	24	22	28	24	1.99
57831115--57831254	37	3.8	37	93	0	235	25	31	19	23	1.98
57831395--57831965	48	11.9	48	94	1	982	31	27	6	34	1.82
57835209--57835365	28	5.5	28	75	7	122	31	29	17	21	1.96
57835236--57835337	29	3.6	29	76	7	100	29	31	16	22	1.96
57835209--57835369	57	2.8	57	87	1	216	31	29	17	21	1.96
57835397--57835765	40	9.2	40	93	1	551	27	28	20	23	1.99
57836559--57836661	37	2.8	37	95	0	179	24	33	20	22	1.97
57836802--57837366	48	11.9	48	91	3	849	30	27	7	35	1.84
57836802--57837359	184	3.0	184	90	3	837	29	27	7	35	1.84
57840844--57841011	42	4.0	41	76	12	117	33	26	15	24	1.95
57840868--57841018	43	3.5	42	76	12	137	33	25	15	25	1.96
57840868--57841011	42	3.4	41	76	11	128	33	25	15	25	1.95
57840857--57841011	86	1.8	83	82	9	197	32	25	16	25	1.96
57845940--57846017	39	2.0	38	97	2	147	28	15	20	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57854333--57854480	75	2.0	75	87	2	217	33	23	18	23	1.97
57854333--57854455	50	2.5	50	82	5	158	33	24	19	22	1.97
57854333--57854456	25	5.0	25	82	3	142	33	25	19	22	1.97
57869541--57869699	39	4.1	39	91	0	237	27	20	23	28	1.99
57874622--57874792	93	1.8	93	91	0	279	29	27	20	22	1.99
57874618--57874786	46	3.7	46	75	13	166	30	27	19	23	1.98
57877182--57877237	15	3.7	15	86	9	87	60	10	16	12	1.58
57878761--57878786	12	2.2	12	100	0	52	50	7	0	42	1.31
57879231--57879328	27	3.5	28	90	2	135	26	13	28	31	1.94
57879259--57879341	27	3.0	27	87	5	96	30	12	25	32	1.92
57883782--57883868	46	1.9	45	88	4	131	29	28	19	21	1.98
57886418--57886551	60	2.3	57	83	5	160	46	1	2	49	1.26
57886513--57886564	26	2.0	25	85	3	68	53	3	0	42	1.19
57890123--57890187	25	2.9	21	75	16	76	53	15	1	29	1.51
57890161--57890221	32	1.9	32	86	0	86	57	16	1	24	1.48
57892518--57892543	13	2.0	13	100	0	52	46	15	0	38	1.46
57894838--57894873	17	2.1	17	94	0	63	55	19	11	13	1.68
57906792--57906834	21	2.0	21	100	0	86	72	4	9	13	1.26
57906976--57907010	3	11.7	3	100	0	70	68	0	0	31	0.90
57908992--57909332	161	2.1	162	86	1	477	36	20	7	35	1.80
57910596--57910631	18	2.1	17	94	5	63	61	2	0	36	1.11
57911087--57911119	16	2.1	16	88	5	50	15	0	33	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57911364--57911596	125	1.9	125	83	1	306	39	14	16	29	1.87
57911586--57911647	25	2.4	25	91	5	88	48	4	9	37	1.57
57911599--57911647	25	2.0	25	100	0	98	48	4	8	38	1.52
57923952--57923991	15	2.8	14	85	7	62	40	0	0	60	0.97
57924578--57924632	13	3.9	14	77	15	51	34	1	1	61	1.17
57926580--57926764	40	4.6	41	84	8	245	22	23	27	25	2.00
57926585--57926738	83	1.9	83	92	0	263	21	23	29	25	1.99
57926585--57926764	83	2.2	82	88	3	240	22	24	28	25	1.99
57933885--57933960	40	1.9	40	86	0	107	18	14	32	34	1.91
57937665--57937715	14	3.6	14	76	10	50	21	1	35	41	1.65
57939490--57939562	36	2.0	36	100	0	146	36	21	24	16	1.94
57941684--57942045	46	7.7	47	72	14	170	24	30	17	26	1.97
57941834--57942042	46	4.5	45	77	8	181	23	29	18	28	1.97
57944642--57944791	65	2.3	65	89	0	228	20	21	23	34	1.97
57951526--57951658	43	2.8	46	82	12	164	28	29	18	23	1.98
57951587--57951739	43	3.6	43	81	1	146	32	31	16	20	1.94
57955731--57955791	32	1.9	32	86	6	88	39	8	19	32	1.81
57964348--57964408	26	2.4	25	78	13	70	29	3	6	60	1.38
57971770--57971815	23	2.0	23	84	12	60	45	10	6	36	1.65
57971777--57971821	23	2.0	23	82	8	56	40	13	8	37	1.76
57980026--57980079	23	2.3	23	87	0	72	33	9	27	29	1.88
57980351--57980410	29	2.0	30	81	15	72	61	0	16	21	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57980870--57980990	26	4.8	26	72	12	92	19	19	19	41	1.91
57985538--57985592	29	1.9	29	85	3	76	21	45	18	14	1.85
57987609--57987692	28	3.2	27	65	25	72	22	16	30	29	1.96
57987574--57987736	50	3.3	50	84	1	202	23	19	28	28	1.98
57990835--57990867	15	2.2	15	94	0	57	18	12	12	57	1.64
57993108--57993134	11	2.5	11	100	0	54	22	18	33	25	1.97
57993632--57993764	50	2.7	50	90	1	205	25	17	29	27	1.97
57995501--57995671	93	1.8	93	96	0	315	28	28	21	21	1.99
57995496--57995668	46	3.7	46	78	13	210	28	27	21	21	1.99
57999745--57999916	46	3.7	46	75	14	174	22	20	28	28	1.99
58000098--58000207	1	110.0	1	83	0	139	0	91	4	3	0.49
58000887--58000920	17	1.9	18	94	5	61	41	5	11	41	1.66
58004324--58004355	15	2.1	15	94	0	55	43	18	0	37	1.51
58005002--58005171	46	3.7	45	78	14	204	28	28	20	22	1.99
58005007--58005175	92	1.8	92	94	2	304	28	28	20	21	1.98
58010513--58010640	49	2.6	49	80	2	150	21	26	21	29	1.99
58016934--58017017	26	3.4	25	86	8	109	27	21	22	28	1.99
58017226--58017288	31	2.0	31	84	0	81	34	12	23	28	1.92
58019954--58019983	15	2.0	15	93	0	51	36	16	26	20	1.93
58020190--58020261	37	1.9	37	91	0	117	23	19	29	27	1.98
58021535--58021973	40	11.0	40	88	0	608	22	21	28	27	1.99
58022137--58022187	25	2.0	25	81	7	59	33	13	31	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58022184--58022274	28	3.2	26	74	11	74	21	17	29	30	1.96
58025607--58025755	48	3.1	48	99	0	289	34	6	27	31	1.81
58025901--58026010	37	3.0	37	93	0	184	22	19	30	28	1.98
58034387--58034457	26	2.8	26	91	4	110	23	25	21	29	1.99
58034387--58034470	26	3.4	25	85	8	109	27	22	21	28	1.99
58034679--58034741	31	2.0	31	93	0	108	36	15	23	23	1.94
58036056--58036099	20	2.2	20	91	0	70	34	25	9	31	1.87
58048295--58048457	78	2.1	79	97	2	319	32	20	19	28	1.96
58050198--58050319	27	4.4	28	88	4	167	32	27	12	27	1.92
58054313--58054435	45	2.7	45	92	2	194	30	27	19	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332