genome.fa.s13.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  180  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59736384--59736549	71	2.3	71	87	2	235	28	22	22	25	1.99
59736384--59736575	47	4.0	47	85	4	242	29	21	22	25	1.99
59736768--59736831	31	2.1	31	90	0	101	35	15	23	25	1.94
59738314--59738466	40	3.8	40	86	2	211	24	27	24	24	2.00
59743672--59743897	40	5.7	40	85	5	228	27	26	19	26	1.99
59743665--59743897	80	2.9	81	78	8	262	27	26	19	26	1.99
59750014--59750093	37	2.2	37	100	0	160	41	18	5	35	1.73
59751024--59751076	19	2.8	19	70	0	52	22	22	39	15	1.91
59762097--59762165	30	2.3	30	87	0	111	36	23	14	26	1.93
59765037--59765061	6	4.2	6	100	0	50	68	0	16	16	1.22
59767738--59767781	12	3.7	12	90	0	70	31	0	40	27	1.56
59767723--59767789	24	2.8	24	81	0	71	29	0	44	25	1.54
59769708--59769778	31	2.3	31	92	0	115	28	23	15	32	1.95
59769997--59770093	25	3.8	26	97	1	171	27	23	22	25	2.00
59769997--59770093	51	1.9	51	93	4	169	27	23	22	25	2.00
59770891--59770982	27	3.4	27	82	8	98	18	23	20	36	1.94
59770913--59770991	27	2.9	27	88	3	115	17	24	22	35	1.95
59771099--59771359	81	3.2	80	84	6	323	29	7	20	42	1.80
59771127--59771359	27	8.7	26	80	7	252	30	7	20	42	1.79
59771013--59771520	27	18.7	27	77	5	236	33	8	19	38	1.83
59771015--59771373	54	6.6	54	75	7	280	30	8	20	40	1.82
59771182--59771386	107	1.9	107	80	4	234	31	6	20	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59777513--59777550	20	2.0	20	89	5	60	26	7	0	65	1.19
59780500--59780597	49	2.0	49	97	0	187	35	27	16	20	1.94
59794509--59794561	20	2.7	20	96	0	97	33	7	24	33	1.84
59794682--59794719	20	2.0	20	89	5	60	65	0	7	26	1.19
59799652--59800045	27	14.6	27	81	4	240	37	21	7	33	1.82
59799799--59800086	54	5.3	54	78	6	280	40	20	6	31	1.79
59799813--59800075	81	3.3	81	85	4	309	41	20	7	30	1.79
59799807--59800072	27	9.9	27	79	4	139	42	20	6	30	1.78
59800049--59800128	28	2.9	27	72	22	74	43	16	8	31	1.78
59800190--59800280	27	3.4	26	82	8	112	34	20	25	19	1.97
59801079--59801200	26	4.8	25	86	7	174	25	22	22	28	1.99
59801419--59801531	31	3.7	31	84	5	144	31	19	23	25	1.98
59802669--59802773	27	3.9	27	84	0	129	44	20	10	24	1.82
59802647--59802784	54	2.5	52	77	9	141	44	17	10	26	1.81
59803765--59803808	12	3.7	12	90	0	70	27	40	0	31	1.56
59803763--59803823	24	2.5	24	81	0	68	27	40	0	31	1.57
59809666--59809734	30	2.3	30	84	0	93	26	13	23	37	1.91
59811943--59812118	46	3.8	46	77	14	200	20	21	28	29	1.98
59811940--59812111	93	1.8	93	93	2	301	20	21	29	28	1.98
59818533--59818592	27	2.3	27	85	2	77	21	23	20	35	1.96
59821382--59821552	93	1.8	93	93	0	297	21	21	28	28	1.98
59821385--59821557	46	3.7	46	79	10	208	21	20	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59828330--59828500	93	1.8	93	96	0	315	21	21	29	28	1.98
59828334--59828505	46	3.7	46	80	13	217	21	21	28	28	1.99
59833378--59833607	40	5.7	40	95	0	388	25	26	20	26	1.99
59838029--59838080	21	2.5	21	96	0	95	23	28	15	32	1.95
59841361--59841509	40	3.7	40	96	0	271	24	26	21	26	1.99
59846152--59846207	27	2.1	27	82	0	67	28	17	25	28	1.98
59846840--59846891	27	2.0	26	84	3	68	17	26	21	34	1.95
59847062--59847240	88	2.0	89	95	3	326	27	16	22	33	1.95
59847485--59847515	16	1.9	16	93	0	53	80	0	9	9	0.90
59849247--59849474	79	2.9	80	89	2	318	25	21	28	24	1.99
59849247--59849474	40	5.8	40	90	3	318	25	21	28	24	1.99
59849247--59849474	119	1.9	119	87	3	334	25	21	28	24	1.99
59857794--59858023	40	5.8	40	88	3	302	26	21	27	24	1.99
59865984--59866105	42	2.9	42	80	7	131	30	25	18	26	1.98
59868808--59868941	40	3.3	40	93	0	232	20	23	28	27	1.99
59870165--59870206	22	1.9	23	85	9	61	57	19	7	16	1.62
59876456--59876506	18	2.8	18	78	0	57	39	19	11	29	1.87
59881513--59881672	41	3.9	41	78	12	177	21	23	28	26	1.99
59889954--59890050	41	2.4	41	96	0	176	18	23	31	25	1.97
59894023--59894150	49	2.6	49	82	4	143	23	28	18	28	1.98
59896255--59896389	27	5.0	27	84	0	171	37	20	18	23	1.94
59899546--59899703	29	5.5	28	90	2	217	29	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59899546--59899701	57	2.7	58	89	3	219	28	12	25	33	1.92
59899546--59899703	86	1.8	86	89	2	246	29	12	25	32	1.92
59901900--59902090	39	4.9	39	92	0	319	29	19	26	24	1.98
59901900--59902136	78	3.1	78	87	1	244	30	19	26	23	1.98
59901903--59902134	117	2.0	116	83	4	288	30	19	26	23	1.98
59906020--59906095	25	3.0	25	98	0	143	52	0	3	43	1.19
59909178--59909223	19	2.5	19	89	3	67	6	23	6	63	1.43
59910463--59910522	27	2.2	27	96	0	111	30	23	15	31	1.95
59917951--59918014	26	2.5	26	87	10	87	32	21	18	26	1.97
59921701--59921790	24	3.8	24	79	2	101	26	21	15	36	1.93
59921713--59921801	23	3.8	24	76	7	85	23	22	15	38	1.93
59921676--59921814	47	2.9	47	81	11	167	27	23	16	33	1.96
59921737--59921833	47	2.1	47	82	3	115	28	20	17	32	1.96
59922917--59923071	76	2.0	76	94	0	274	40	12	11	36	1.79
59924878--59924933	11	5.5	11	71	16	57	35	12	19	32	1.89
59924867--59924933	20	3.3	20	93	0	116	34	11	20	32	1.90
59924983--59925111	25	5.2	25	87	8	158	30	18	23	27	1.98
59929002--59929164	46	3.5	45	77	8	184	30	30	19	20	1.97
59933986--59934073	29	3.0	29	80	8	97	56	15	17	10	1.66
59933986--59934064	15	5.4	15	77	10	83	58	13	17	10	1.63
59933997--59934073	15	5.2	15	75	9	77	55	15	16	11	1.68
59942155--59942339	40	4.7	40	83	7	218	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59942155--59942339	79	2.3	82	82	9	222	25	27	22	24	2.00
59948922--59948960	20	2.0	20	94	0	69	33	12	23	30	1.92
59949010--59949105	24	4.0	24	82	11	117	30	20	20	28	1.98
59950716--59950740	13	1.9	13	100	0	50	32	16	16	36	1.90
59951665--59951969	47	6.4	47	91	1	466	33	8	29	28	1.86
59958879--59958955	38	2.0	38	94	0	136	42	27	7	22	1.80
59961609--59961687	32	2.5	32	87	4	106	26	20	26	26	1.99
59963573--59963626	26	2.1	26	100	0	108	35	11	18	35	1.86
59963630--59963698	33	2.1	33	100	0	138	49	17	2	30	1.61
59967645--59967810	27	6.1	27	83	2	82	42	19	12	25	1.86
59967666--59967848	27	6.8	27	87	0	231	40	19	12	27	1.87
59969557--59969603	9	4.9	10	78	19	55	21	27	34	17	1.95
59971060--59971180	44	2.8	43	77	3	109	30	22	19	28	1.98
59972620--59972673	22	2.5	22	93	0	90	24	14	27	33	1.94
59975324--59975369	22	2.1	22	91	0	74	34	26	15	23	1.94
59975450--59975484	15	2.3	15	100	0	70	48	34	5	11	1.63
59977661--59977750	42	2.1	42	81	6	101	32	24	18	24	1.97
59993962--59994059	49	2.0	49	95	0	178	18	17	29	34	1.94
59996845--59996897	20	2.7	20	96	0	97	33	7	24	33	1.84
59997018--59997055	20	2.0	20	89	5	60	65	0	7	26	1.19
60001986--60002379	27	14.6	27	81	4	240	37	21	7	33	1.82
60002133--60002420	54	5.3	54	78	6	280	40	20	6	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60002147--60002409	81	3.3	81	85	4	309	41	20	7	30	1.79
60002141--60002406	27	9.9	27	79	4	139	42	20	6	30	1.78
60002383--60002462	28	2.9	27	72	22	74	43	16	8	31	1.78
60002524--60002614	27	3.4	26	82	8	112	34	20	25	19	1.97
60003412--60003533	26	4.8	25	86	7	174	25	22	22	28	1.99
60003752--60003864	31	3.7	31	84	5	144	31	19	23	25	1.98
60087506--60087584	37	2.1	37	90	0	122	25	31	18	24	1.98
60087703--60088111	47	8.7	47	96	0	714	28	30	8	32	1.86
60091773--60092413	40	16.1	40	91	1	988	27	28	19	24	1.99
60093625--60093703	37	2.1	37	90	0	122	25	31	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332