genome.fa.s13.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  156  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51218596--51218629	17	2.0	17	100	0	68	52	5	23	17	1.66
51223740--51223795	26	2.2	26	83	6	69	33	3	23	39	1.72
51234316--51234348	17	2.0	17	94	5	59	57	0	0	42	0.98
51234433--51234492	31	2.0	29	87	6	84	58	6	1	33	1.34
51234674--51234748	36	2.1	36	100	0	150	32	17	13	37	1.88
51234899--51234977	21	3.9	19	76	16	70	67	5	3	24	1.28
51234925--51234969	20	2.3	18	82	14	54	68	8	4	17	1.32
51235021--51235074	22	2.5	22	74	14	58	59	1	5	33	1.31
51235050--51235074	13	1.9	13	100	0	50	68	0	0	32	0.90
51235167--51235205	20	2.0	20	90	9	64	33	10	0	56	1.33
51235736--51235774	18	2.2	18	95	0	69	20	17	12	48	1.80
51236022--51236065	19	2.5	18	85	10	56	68	0	4	27	1.09
51238834--51239754	94	9.9	93	79	8	740	25	19	18	36	1.94
51239098--51239321	50	4.8	44	68	20	152	25	19	19	35	1.95
51239168--51239352	44	4.1	44	71	18	137	25	18	19	36	1.94
51239073--51239748	364	1.9	364	86	1	980	26	21	17	35	1.95
51239116--51239654	270	2.0	270	86	2	751	26	20	17	35	1.94
51239596--51239754	50	3.3	48	70	16	141	25	23	18	31	1.98
51239475--51239714	44	5.2	44	66	20	157	26	19	18	35	1.95
51244261--51244493	43	5.5	42	68	15	149	25	27	17	29	1.98
51244320--51244450	41	3.1	41	67	16	115	25	25	19	29	1.98
51244272--51244506	84	2.8	84	90	0	371	25	28	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51246384--51246413	15	2.1	15	93	6	53	36	26	6	30	1.82
51248532--51248575	19	2.5	18	85	10	56	68	0	4	27	1.09
51251339--51251382	20	2.3	19	80	4	52	61	0	2	36	1.09
51252965--51253037	35	2.1	36	78	12	82	28	21	13	35	1.92
51263011--51263053	19	2.4	17	80	7	50	69	0	6	23	1.12
51264967--51265162	39	5.0	39	82	3	182	22	21	27	29	1.99
51270841--51270898	21	2.6	23	81	8	57	48	0	3	48	1.18
51272277--51272320	17	2.6	17	88	0	70	65	13	11	9	1.46
51275026--51275435	141	3.0	135	83	6	538	41	22	16	18	1.89
51275025--51275438	135	3.0	135	83	6	546	41	22	16	18	1.90
51287923--51287955	15	2.2	15	94	0	57	27	15	12	45	1.81
51289941--51289987	24	2.0	23	83	4	58	51	0	6	42	1.27
51290009--51290049	22	1.9	21	85	5	55	70	7	19	2	1.22
51291931--51292114	39	4.7	40	81	7	207	25	27	22	24	2.00
51291960--51292110	79	1.9	80	83	6	200	25	27	21	25	1.99
51294229--51294285	22	2.7	21	75	5	51	38	0	21	40	1.53
51294439--51294551	51	2.3	48	81	4	118	16	18	22	42	1.89
51304798--51304851	22	2.4	21	80	17	56	16	9	18	55	1.67
51305375--51305431	29	2.0	28	83	12	73	33	5	26	35	1.79
51305852--51306001	42	3.5	43	72	13	114	26	18	25	29	1.98
51307597--51307730	49	2.9	46	82	8	141	30	26	13	29	1.94
51307636--51307730	49	2.0	48	93	2	163	31	27	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51307646--51307808	47	3.4	47	78	13	122	30	27	13	28	1.94
51307830--51307979	31	4.8	31	84	4	194	27	25	18	28	1.98
51307955--51308083	50	2.5	51	88	2	206	25	21	16	36	1.94
51310646--51310725	27	3.0	26	83	7	74	23	18	21	36	1.95
51310661--51310779	27	4.4	27	82	0	130	22	21	20	36	1.95
51311872--51312109	51	4.8	50	86	2	282	26	18	25	29	1.98
51313910--51314079	52	3.4	51	87	8	217	28	29	13	28	1.94
51315307--51315343	8	4.8	8	96	3	67	72	0	0	27	0.84
51318107--51318193	20	4.3	20	86	5	113	51	14	8	25	1.70
51321237--51321804	27	21.1	27	88	0	771	32	19	22	25	1.97
51321946--51322032	27	3.2	27	77	9	88	22	20	19	36	1.95
51322235--51322325	28	3.2	28	95	3	157	20	26	27	25	1.99
51330691--51330751	26	2.3	26	77	0	68	19	19	26	34	1.96
51335876--51336032	56	2.8	54	81	7	165	28	33	17	19	1.95
51342365--51342423	23	2.6	23	97	0	109	23	42	23	10	1.85
51347453--51347500	24	2.0	24	84	11	64	50	27	2	20	1.60
51348185--51348352	85	2.0	84	80	10	189	35	26	16	22	1.95
51356159--51356279	43	2.8	44	82	9	160	29	28	18	23	1.97
51368021--51368082	23	2.7	23	92	0	97	14	30	33	20	1.93
51369137--51369308	43	4.0	42	77	10	161	32	25	16	25	1.96
51373637--51373671	17	2.1	17	94	0	61	60	14	8	17	1.58
51378513--51378582	34	2.1	34	100	0	140	20	20	2	57	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51382089--51382260	67	2.6	66	81	7	170	31	16	29	22	1.96
51382113--51382296	67	2.8	64	78	8	203	28	16	30	23	1.96
51390219--51390275	18	3.2	18	76	0	69	36	12	14	36	1.83
51390226--51390282	18	3.2	18	73	9	62	36	15	10	36	1.82
51390475--51390499	6	4.2	6	100	0	50	52	16	16	16	1.76
51390481--51390601	53	2.3	53	95	0	215	42	22	16	18	1.88
51390475--51390611	53	2.4	59	82	14	205	43	21	17	18	1.89
51397460--51397500	21	2.0	21	85	0	55	36	14	14	34	1.87
51397622--51397844	27	8.3	27	88	0	266	25	20	19	34	1.96
51397650--51397898	81	3.1	80	80	4	288	26	17	19	36	1.94
51397829--51397926	27	3.7	26	82	5	115	29	8	20	41	1.81
51399845--51399984	70	2.0	67	85	9	185	31	21	28	18	1.97
51400219--51400243	8	3.1	8	100	0	50	12	36	28	24	1.91
51400623--51400714	27	3.4	27	83	0	94	27	19	17	35	1.94
51406389--51406483	27	3.5	27	89	0	145	25	20	17	36	1.94
51408733--51408771	7	5.6	7	93	0	69	56	2	25	15	1.52
51412416--51412454	19	2.1	19	100	0	78	20	10	7	61	1.52
51415457--51415522	32	2.1	32	97	0	123	22	9	34	33	1.86
51429866--51429906	5	8.2	5	84	10	57	0	21	0	78	0.76
51429866--51429933	25	2.6	27	84	11	88	2	26	0	70	1.01
51434591--51434658	10	6.5	10	78	10	57	2	27	0	69	1.03
51434591--51434631	5	8.2	5	84	10	57	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51438742--51439552	270	3.0	270	95	0	1451	37	21	10	30	1.86
51453303--51453343	16	2.5	17	80	11	50	60	2	7	29	1.36
51473284--51473309	13	2.0	13	100	0	52	15	38	30	15	1.88
51475245--51475504	46	5.6	47	78	9	223	25	30	17	26	1.97
51480127--51480165	18	2.2	18	86	9	53	61	0	7	30	1.24
51489688--51489859	93	1.8	93	92	2	292	28	29	20	21	1.98
51489681--51489856	46	3.8	47	77	12	202	29	29	19	21	1.98
51497411--51497586	96	1.8	96	85	2	246	28	20	28	22	1.98
51500558--51500661	42	2.5	42	87	6	149	30	25	14	29	1.95
51505295--51505691	108	3.7	108	85	4	472	22	23	17	36	1.95
51505295--51505699	53	7.6	54	77	9	350	22	23	17	36	1.94
51505577--51505752	47	3.6	47	73	13	147	27	22	13	36	1.91
51505523--51505752	101	2.3	101	90	0	354	26	22	13	36	1.92
51505806--51505931	45	2.8	45	96	0	225	19	25	19	34	1.96
51514976--51515189	106	2.0	106	90	1	340	33	28	15	22	1.95
51515899--51516338	45	10.1	45	85	7	552	29	29	17	23	1.97
51516108--51516171	33	1.9	33	96	0	119	31	32	10	25	1.90
51516063--51516309	78	3.0	78	80	14	307	30	29	16	24	1.96
51515986--51516309	168	1.9	168	91	1	533	30	29	16	23	1.97
51515929--51516338	213	1.9	212	91	2	662	30	29	17	23	1.97
51532626--51532660	17	2.1	17	88	0	52	17	20	2	60	1.49
51542576--51542654	37	2.1	37	90	0	122	25	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51542773--51542965	47	4.1	47	88	2	271	26	31	9	31	1.89
51555615--51556525	457	2.0	457	95	0	1642	34	16	15	33	1.90
51559685--51559855	46	3.7	46	77	13	197	22	21	28	28	1.99
51570020--51570080	24	2.5	24	81	5	70	22	14	29	32	1.94
51581257--51581424	40	4.2	40	83	4	106	25	27	23	23	2.00
51581280--51581424	40	3.6	40	85	4	193	23	26	24	25	2.00
51589290--51589400	40	2.8	40	84	1	107	25	27	23	23	2.00
51589313--51589441	40	3.2	40	86	4	161	23	26	24	25	2.00
51594151--51594210	23	2.6	23	100	0	120	13	33	33	20	1.91
51605144--51605201	20	2.9	21	82	10	77	34	3	1	60	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332