Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  17  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4839185--4839229
22
2.1
21
83
4
54
46
2
0
51
1.13
4839216--4839279
22
2.9
23
77
15
71
64
3
3
29
1.24
4839271--4839393
40
3.1
40
82
2
149
44
18
17
18
1.87
4839287--4839393
39
2.7
40
83
2
135
42
19
18
18
1.89
4839560--4839596
18
2.1
18
100
0
74
10
40
0
48
1.38
4842577--4843011
241
1.8
241
98
0
852
33
18
14
33
1.92
4843131--4843251
9
12.6
9
72
13
89
45
21
1
31
1.62
4843137--4843236
27
3.5
27
78
10
101
45
22
2
31
1.64
4843137--4843249
57
1.9
58
87
3
165
45
22
1
30
1.63
4849849--4850119
132
2.1
132
85
3
359
26
18
19
35
1.95
4864912--4864955
20
2.2
20
88
8
63
29
2
0
68
1.02
4869089--4869122
17
2.0
17
100
0
68
29
11
5
52
1.61
4870852--4870891
13
3.2
13
80
19
50
25
25
0
50
1.50
4870839--4870879
18
2.2
19
87
12
59
29
24
0
46
1.53
4871041--4871126
21
4.1
21
89
0
109
33
24
23
18
1.97
4872767--4872806
19
2.2
19
90
4
64
52
5
5
37
1.45
4879009--4879558
278
2.0
278
98
0
1064
31
16
24
27
1.96
4880732--4880795
29
2.1
30
83
11
78
53
6
1
39
1.36
4884883--4884917
3
11.7
3
93
0
61
37
0
31
31
1.58
4889544--4889589
9
4.8
10
78
10
51
30
2
4
63
1.26
4889544--4889589
19
2.4
19
85
7
58
30
2
4
63
1.26
4901914--4901945
16
2.0
16
100
0
64
43
0
25
31
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4902173--4902215
3
14.0
3
95
4
77
32
0
0
67
0.91
4926516--4926561
24
1.9
24
86
0
65
41
10
19
28
1.85
4926526--4926572
24
2.0
24
83
8
60
44
14
14
25
1.84
4929486--4929556
37
1.9
36
91
2
115
11
23
5
59
1.53
4931395--4931512
43
2.7
43
88
0
191
36
21
15
27
1.93
4933262--4933294
12
2.7
13
86
13
52
6
12
0
81
0.85
4938647--4938684
20
1.9
20
88
0
58
71
0
2
26
1.00
4938726--4938774
14
3.8
13
76
15
57
53
0
2
44
1.12
4938718--4938771
26
2.1
24
83
13
63
53
0
3
42
1.18
4940376--4940439
7
9.1
7
74
19
62
37
1
1
59
1.16
4940375--4940485
20
5.2
21
74
15
79
35
3
0
60
1.20
4940369--4940439
13
5.9
12
72
16
58
35
1
1
61
1.13
4940412--4940477
35
1.9
33
88
11
98
34
6
0
59
1.22
4940460--4940512
18
3.1
17
84
7
63
30
5
1
62
1.29
4940668--4940726
21
2.7
23
78
14
63
37
8
0
54
1.31
4940787--4940842
17
3.3
17
75
12
53
32
3
0
64
1.11
4940824--4940872
14
3.8
13
76
15
57
44
2
0
53
1.12
4940831--4940889
26
2.3
25
77
11
66
42
3
0
54
1.17
4942148--4942213
18
3.8
18
77
15
59
62
1
4
31
1.25
4942184--4942300
13
9.1
13
71
18
59
60
1
3
34
1.23
4942142--4942220
41
1.9
41
82
7
97
63
2
3
30
1.25
4942147--4942293
20
7.5
19
73
20
108
59
1
4
34
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4955399--4955436
20
1.9
20
88
0
58
60
0
2
36
1.11
4959190--4959243
26
2.1
26
100
0
108
35
25
14
24
1.94
4973784--4973834
25
2.0
25
100
0
102
45
11
19
23
1.83
4975815--4975862
10
4.7
10
79
10
53
35
2
0
62
1.07
4988406--4988516
47
2.4
47
83
6
145
26
16
22
35
1.95
4999166--4999205
21
1.9
21
85
10
55
55
5
10
30
1.54
4999447--4999496
21
2.4
21
83
9
59
38
0
0
62
0.96
5001517--5001565
20
2.4
22
80
13
59
6
18
6
69
1.31
5004814--5004859
24
2.0
24
86
4
67
26
19
10
43
1.84
5018437--5018498
29
2.1
29
85
5
81
40
9
8
41
1.67
5019286--5019379
36
2.7
36
73
11
97
26
7
6
59
1.49
5029195--5029329
60
2.3
60
77
8
141
41
0
14
42
1.51
5031516--5031707
53
3.9
49
81
13
207
30
30
15
23
1.95
5031534--5031724
52
3.8
52
80
8
164
29
29
16
23
1.96
5044540--5044818
46
6.0
47
88
2
379
20
24
15
39
1.91
5057978--5058006
9
3.2
9
100
0
58
41
10
10
37
1.73
5067904--5068144
120
2.0
120
97
0
455
26
22
21
29
1.99
5071522--5071580
28
2.1
28
87
0
82
45
3
0
50
1.18
5071523--5071580
15
4.1
15
70
18
52
44
3
0
51
1.18
5079101--5079140
21
1.9
21
94
0
71
27
20
30
22
1.98
5079590--5079638
12
4.1
12
83
0
62
28
10
6
55
1.57
5079584--5079635
18
2.9
18
77
11
52
25
11
5
57
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5079647--5079707
6
10.2
6
76
0
50
22
6
14
55
1.62
5079762--5079923
48
3.4
48
90
0
245
25
11
17
45
1.81
5081880--5082143
43
6.2
43
92
1
419
26
9
20
43
1.82
5082808--5082870
21
3.1
21
80
6
60
33
36
20
9
1.85
5083287--5083423
59
2.3
59
87
0
193
31
20
12
35
1.90
5083469--5083527
30
2.0
30
83
6
77
49
20
5
25
1.69
5083970--5084011
20
2.1
20
86
8
59
0
45
0
54
0.99
5086456--5086496
18
2.3
19
83
8
50
48
2
2
46
1.28
5089196--5089287
37
2.5
37
82
12
100
41
2
3
53
1.29
5089196--5089271
11
6.8
11
72
21
52
40
1
2
55
1.22
5092588--5092649
33
1.9
32
90
3
97
45
11
8
35
1.70
5093492--5093517
8
3.2
8
100
0
52
88
0
0
11
0.52
5099928--5100078
53
2.8
53
88
4
205
29
27
16
26
1.97
5104079--5104132
20
2.7
19
77
8
54
64
0
5
29
1.16
5107767--5107954
59
3.2
58
68
13
157
42
3
5
49
1.41
5107889--5107930
15
2.8
16
85
10
61
45
0
4
50
1.23
5107697--5108052
119
3.0
120
94
1
624
42
2
6
48
1.42
5108266--5108333
16
4.2
16
96
0
127
38
35
0
26
1.57
5109853--5109886
17
2.0
17
88
11
52
26
8
0
64
1.22
5114484--5114531
14
3.4
14
82
0
51
41
6
31
20
1.77
5115753--5115850
30
3.3
30
75
0
97
29
16
26
27
1.97
5118202--5118257
5
11.0
5
78
17
62
1
17
3
76
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5118202--5118257
11
5.5
10
76
19
62
1
17
3
76
1.01
5119591--5119625
14
2.5
14
85
0
52
45
5
34
14
1.68
5120733--5120830
30
3.3
30
75
0
97
29
16
26
27
1.97
5126882--5126933
21
2.5
21
83
0
68
40
26
7
25
1.82
5128311--5128362
18
2.9
18
88
0
77
44
13
5
36
1.68
5132868--5132912
17
2.6
17
86
6
65
80
17
0
2
0.82
5141700--5141751
18
2.9
18
94
0
86
48
15
11
25
1.78
5143356--5143394
19
2.1
19
100
0
78
30
5
0
64
1.15
5143845--5143869
7
3.6
7
100
0
50
44
16
24
16
1.86
5145991--5146021
1
31.0
1
100
0
62
0
0
0
100
0.00
5151030--5151063
17
2.0
17
88
0
50
58
0
2
38
1.13
5152027--5152060
17
2.0
17
88
0
50
47
0
0
52
1.00
5161038--5161079
20
2.2
20
86
4
59
33
0
28
38
1.58
5170656--5170681
12
2.2
12
100
0
52
34
7
15
42
1.75
5174489--5174522
17
2.0
17
100
0
68
11
29
0
58
1.33
5175827--5175856
15
2.0
15
93
0
51
73
6
3
16
1.18
5184058--5184089
17
2.0
17
88
11
50
25
15
25
34
1.95
5185427--5185458
6
5.5
6
96
3
57
71
28
0
0
0.86
5190673--5190697
5
5.0
5
100
0
50
40
0
0
60
0.97
5195727--5195756
15
2.0
15
93
0
51
50
0
10
40
1.36
5195723--5195785
27
2.3
26
76
10
63
38
0
11
50
1.38
5195781--5195812
10
3.3
10
95
4
57
31
6
0
62
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5199527--5199615
18
4.9
18
72
14
67
65
3
2
29
1.21
5199594--5199626
11
3.0
11
95
0
57
72
3
0
24
0.98
5201884--5201921
20
1.9
20
84
10
51
52
10
10
26
1.68
5206106--5206225
41
2.9
41
88
4
179
22
32
25
19
1.97
5207802--5208031
50
4.6
50
79
7
234
24
19
26
28
1.99
5207801--5207989
101
1.9
99
85
3
254
26
19
25
28
1.99
5208131--5208182
27
2.0
26
85
11
70
40
1
21
36
1.64
5214068--5214181
33
3.5
33
76
7
106
35
22
9
32
1.87
5216150--5216459
47
6.6
47
90
1
467
29
29
8
32
1.87
5216150--5216459
96
3.3
96
90
3
488
29
29
8
32
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332