genome.fa.s13.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  168  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55525172--55525209	19	2.0	19	100	0	76	47	15	10	26	1.78
55526351--55526393	22	2.0	22	81	9	52	41	27	4	25	1.75
55526957--55527154	43	4.7	42	90	1	243	27	26	15	30	1.96
55532650--55532685	9	3.8	10	89	10	58	72	0	0	27	0.85
55532797--55532861	33	2.0	31	88	5	94	55	3	16	24	1.56
55533344--55533430	46	1.9	45	97	2	165	24	21	14	39	1.91
55534859--55535076	40	5.5	40	91	2	325	24	28	23	22	1.99
55540824--55541046	40	5.6	40	88	3	308	25	28	22	24	1.99
55546287--55546544	40	6.5	40	93	2	396	24	28	23	22	1.99
55548258--55548308	10	5.1	10	79	13	52	64	1	7	25	1.31
55549084--55549309	119	1.9	119	87	0	335	28	28	17	25	1.98
55550194--55550248	8	7.3	7	79	20	58	72	0	3	23	1.00
55550209--55550260	5	10.4	5	76	15	54	76	0	1	21	0.87
55550202--55550268	17	3.9	17	78	21	77	74	0	2	22	0.95
55550193--55550263	25	2.9	25	87	8	94	74	0	2	22	0.94
55550193--55550253	12	4.9	12	79	15	70	73	0	3	22	0.97
55551881--55552006	45	2.8	45	77	13	141	23	30	19	26	1.98
55555385--55555420	9	3.8	10	89	10	58	72	0	0	27	0.85
55556315--55556374	10	6.0	10	84	11	70	66	1	8	23	1.28
55557454--55557728	137	2.0	137	98	0	532	31	24	18	25	1.98
55557476--55557686	64	3.2	64	62	20	142	30	26	17	26	1.97
55557976--55558028	26	2.0	27	85	7	74	26	11	22	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55559507--55559616	26	4.2	26	97	0	184	36	24	5	33	1.79
55563348--55563622	137	2.0	137	97	0	523	31	24	18	25	1.97
55563370--55563580	64	3.2	64	62	20	142	30	26	17	26	1.97
55565868--55566860	94	10.3	93	83	9	1010	27	29	9	33	1.89
55565868--55566860	141	6.9	140	86	8	1168	27	29	9	33	1.89
55566104--55566328	110	2.0	110	100	0	450	27	30	10	31	1.90
55565898--55566859	47	19.9	46	82	9	705	27	29	9	33	1.89
55566151--55566281	63	2.1	63	94	0	226	29	30	9	30	1.89
55568115--55568293	85	2.1	85	98	0	349	26	27	8	37	1.85
55569549--55569948	40	10.1	40	89	4	560	26	28	21	24	1.99
55569549--55569948	121	3.4	118	88	5	572	26	28	21	24	1.99
55569562--55569948	81	4.9	79	90	5	575	26	28	21	24	1.99
55570002--55570076	38	2.0	38	86	5	107	24	26	18	30	1.98
55572561--55572585	12	2.1	12	100	0	50	40	28	0	32	1.57
55572629--55573161	47	11.3	47	93	2	781	27	29	9	32	1.89
55572519--55573149	94	6.5	103	88	6	362	28	29	9	32	1.89
55572624--55573161	143	3.8	141	91	3	809	27	29	9	32	1.89
55574421--55574599	85	2.1	85	98	0	349	26	27	8	37	1.85
55576278--55576361	26	3.2	26	96	0	150	35	23	5	34	1.80
55582640--55582694	26	2.1	26	93	0	92	5	30	7	56	1.49
55583742--55583791	23	2.1	24	82	10	59	32	8	0	60	1.26
55583865--55583897	16	2.0	17	88	5	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55585516--55585554	6	6.5	6	100	0	78	51	0	0	48	1.00
55588596--55588621	13	2.0	13	100	0	52	76	0	15	7	0.99
55590220--55590316	46	2.1	45	83	9	117	24	22	18	34	1.96
55606718--55606769	23	2.3	23	90	6	79	21	17	19	42	1.89
55606728--55606849	23	5.3	22	74	8	93	25	18	18	36	1.94
55606728--55606826	46	2.2	45	83	5	128	24	18	20	37	1.94
55606751--55606856	46	2.3	44	82	9	115	25	17	17	38	1.92
55611594--55611645	26	2.0	26	100	0	104	42	19	11	26	1.85
55615499--55615666	43	3.9	42	72	6	149	25	17	26	30	1.97
55617219--55617306	46	1.9	46	90	0	131	27	29	22	20	1.99
55623427--55623463	20	1.9	20	88	5	58	81	0	13	5	0.86
55625563--55625636	29	2.5	30	80	10	89	44	13	13	28	1.82
55629323--55629352	3	10.0	3	100	0	60	66	0	0	33	0.92
55636204--55636245	22	2.0	21	81	13	50	11	9	7	71	1.31
55636394--55636449	21	2.5	22	80	11	60	33	0	1	64	1.04
55642992--55643216	40	5.7	40	90	3	287	26	26	21	25	2.00
55650977--55651200	40	5.7	39	88	6	267	25	26	21	25	2.00
55650977--55651200	118	1.9	120	82	7	287	25	26	21	25	2.00
55654121--55654276	68	2.3	68	85	4	217	35	20	24	19	1.96
55657498--55657549	23	2.3	23	83	9	63	65	3	7	23	1.35
55660288--55660322	17	2.1	17	89	10	54	34	11	31	22	1.90
55663645--55663669	13	1.9	13	100	0	50	16	40	24	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55665142--55665326	79	2.3	82	84	7	238	25	27	22	24	2.00
55665123--55665326	40	5.1	40	82	8	238	25	27	22	25	2.00
55669290--55669411	22	5.3	22	62	21	61	25	29	11	33	1.91
55669262--55669565	47	6.4	47	91	3	425	26	30	9	32	1.88
55675421--55675525	24	4.6	23	71	20	69	36	20	18	25	1.95
55690958--55691080	55	2.2	56	88	2	176	26	12	28	33	1.92
55690958--55691080	28	4.4	28	90	2	176	26	12	28	33	1.92
55690983--55691093	28	4.0	27	90	3	116	28	11	26	33	1.91
55699157--55699279	55	2.2	56	88	2	176	26	12	28	33	1.92
55699157--55699279	28	4.4	28	90	2	176	26	12	28	33	1.92
55699182--55699292	28	4.0	27	90	3	116	28	11	26	33	1.91
55706222--55706259	20	1.9	20	94	0	67	60	2	2	34	1.24
55710716--55710830	23	4.9	24	79	11	107	33	16	21	27	1.95
55710767--55710839	23	3.2	23	72	16	71	34	20	20	24	1.97
55718174--55718282	37	2.9	37	94	0	182	26	30	19	23	1.98
55718433--55718529	50	1.9	50	89	4	151	28	25	8	37	1.85
55718487--55718679	47	4.1	47	90	2	246	25	29	10	34	1.90
55718532--55718650	23	5.1	22	62	28	59	24	30	13	31	1.93
55720338--55720676	96	3.5	95	81	6	385	26	20	28	25	1.99
55720339--55720676	48	7.0	48	72	9	186	26	20	28	25	1.99
55721455--55721484	15	2.0	15	100	0	60	26	13	6	53	1.64
55723098--55723167	27	2.6	27	95	2	113	31	28	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55723098--55723195	28	3.5	28	90	2	135	31	28	13	26	1.94
55733832--55733962	42	3.1	42	78	2	127	35	25	10	29	1.89
55733842--55733994	42	3.6	42	76	3	119	33	23	11	31	1.90
55734182--55734224	19	2.3	19	87	0	59	30	11	6	51	1.65
55738341--55738370	2	15.0	2	100	0	60	50	0	0	50	1.00
55738702--55738743	13	3.2	13	82	0	57	42	16	0	40	1.48
55740561--55740641	40	2.0	40	100	0	162	32	4	27	35	1.78
55741522--55741560	19	2.1	19	95	0	69	20	15	15	48	1.81
55747225--55747308	33	2.4	36	86	7	111	33	25	13	28	1.93
55747537--55747733	41	4.8	41	91	5	308	27	22	21	28	1.99
55749565--55749611	21	2.2	22	92	3	78	21	38	19	21	1.94
55755344--55755406	12	5.4	12	71	22	55	47	0	3	49	1.17
55755344--55755406	22	2.7	23	77	20	69	47	0	3	49	1.17
55755336--55755413	34	2.3	33	79	14	88	44	0	2	52	1.14
55755673--55755726	16	3.4	16	89	0	72	29	25	5	38	1.79
55755673--55755743	32	2.2	32	82	5	90	30	25	5	38	1.79
55755773--55755840	21	3.3	21	72	12	77	42	5	1	50	1.35
55755771--55755856	41	2.1	41	93	0	145	43	5	2	48	1.39
55755785--55755852	22	3.2	21	70	19	61	45	7	2	44	1.46
55755917--55756022	51	2.1	51	96	0	194	50	8	14	26	1.70
55756841--55756889	22	2.2	22	81	0	62	61	10	10	18	1.55
55756849--55756888	11	3.6	11	79	0	53	57	10	12	20	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55756850--55756899	22	2.3	22	86	6	66	60	6	16	18	1.55
55757704--55757764	30	2.0	30	87	0	86	26	8	9	55	1.60
55757881--55757918	11	3.3	12	85	10	53	63	0	0	36	0.95
55759551--55759579	15	1.9	15	100	0	58	27	0	27	44	1.54
55759591--55759627	19	1.9	19	89	10	58	40	0	8	51	1.32
55759995--55760037	22	2.0	22	100	0	86	46	4	2	46	1.36
55760212--55760247	19	1.9	18	88	5	54	16	8	25	50	1.73
55763169--55763319	68	2.2	68	84	4	189	39	17	17	25	1.92
55767548--55767603	28	2.0	28	86	13	80	78	0	19	1	0.84
55767546--55767603	21	2.8	20	82	15	66	77	0	20	1	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332