genome.fa.s13.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  127  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41511213--41511446	30	7.9	30	69	8	88	22	26	11	39	1.89
41511168--41511443	118	2.3	119	83	1	349	21	27	12	38	1.90
41517325--41517361	9	4.1	9	89	0	56	48	13	8	29	1.71
41517546--41517610	30	2.2	31	80	8	80	18	44	0	36	1.50
41520037--41520078	21	2.0	21	90	0	66	40	14	0	45	1.45
41529649--41529686	20	1.9	20	94	0	67	31	34	5	28	1.80
41529765--41529883	43	2.8	42	76	2	130	31	25	14	28	1.94
41537158--41537187	12	2.4	13	94	5	53	43	16	0	40	1.48
41538890--41538920	9	3.3	9	95	4	53	41	0	0	58	0.98
41542546--41542709	38	4.3	38	84	3	220	22	22	25	29	1.99
41542702--41542813	43	2.6	43	89	0	170	12	25	31	31	1.92
41545320--41545494	27	6.6	27	84	5	194	29	28	14	28	1.95
41553389--41553564	27	6.6	27	81	5	169	28	28	15	26	1.96
41553410--41553563	80	1.9	80	85	6	213	28	28	16	26	1.97
41556314--41556443	67	2.0	67	93	1	226	30	31	13	24	1.93
41566825--41567040	108	2.0	108	88	3	319	25	22	14	37	1.92
41575061--41575105	19	2.3	19	84	3	54	28	8	11	51	1.68
41575069--41575106	19	2.0	19	89	0	58	28	7	13	50	1.69
41575187--41575226	20	2.0	20	100	0	80	50	0	0	50	1.00
41575216--41575260	13	3.5	13	79	11	56	37	2	0	60	1.09
41575215--41575267	26	2.0	26	92	0	88	35	1	1	60	1.19
41576516--41576556	21	2.0	21	85	9	57	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41576526--41576591	25	3.0	21	73	16	69	53	16	1	28	1.52
41576565--41576625	32	1.9	32	86	0	86	57	16	1	24	1.48
41578679--41578745	32	2.1	32	94	0	116	11	14	11	61	1.58
41579146--41580540	464	3.0	464	91	5	2323	41	17	12	29	1.86
41580013--41580052	18	2.2	18	100	0	80	47	12	5	35	1.63
41582666--41582875	3	71.0	3	72	9	128	60	2	6	30	1.37
41582679--41582784	38	2.8	37	85	8	133	66	3	3	26	1.26
41582681--41582848	38	4.4	36	78	14	126	62	3	6	27	1.36
41584564--41584620	15	3.5	15	69	17	51	50	3	0	45	1.18
41585395--41585427	14	2.4	14	94	0	57	36	15	0	48	1.45
41585457--41585494	19	2.1	19	85	5	51	50	13	0	36	1.42
41588852--41588882	16	1.9	16	100	0	62	51	0	0	48	1.00
41589446--41589527	26	3.2	26	87	3	121	34	6	23	36	1.79
41595063--41595123	28	2.2	28	90	0	95	32	26	8	32	1.86
41595233--41595351	28	4.2	28	94	1	193	20	25	22	31	1.98
41595243--41595376	56	2.4	55	87	5	171	20	25	20	34	1.96
41596434--41596467	10	3.3	10	84	8	50	29	8	8	52	1.62
41596863--41596888	11	2.4	11	100	0	52	15	19	50	15	1.79
41602970--41603034	28	2.3	28	91	0	103	32	27	7	32	1.85
41603140--41603229	27	3.2	27	85	4	117	22	24	21	32	1.98
41603152--41603229	27	2.8	27	90	5	120	23	25	19	32	1.98
41603683--41603723	18	2.3	18	86	0	55	24	2	4	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41603830--41603899	35	2.0	35	97	0	131	34	24	10	31	1.88
41609779--41609824	20	2.3	20	88	3	76	28	23	17	30	1.97
41624094--41624356	47	5.6	49	77	9	223	22	29	18	28	1.98
41627307--41627576	48	5.7	48	74	10	180	26	30	17	25	1.97
41627307--41627536	48	4.7	49	77	10	204	25	30	18	25	1.98
41627307--41627672	47	7.7	48	70	15	212	25	29	18	27	1.98
41628008--41628090	30	2.7	31	88	5	125	34	26	7	31	1.84
41631714--41631765	25	2.1	25	88	0	77	36	7	15	40	1.76
41635138--41635181	22	2.0	23	86	4	63	31	0	2	65	1.05
41635912--41635947	18	2.1	18	89	5	56	38	5	0	55	1.23
41644001--41644053	21	2.5	21	87	0	79	15	32	33	18	1.92
41647602--41647671	21	3.3	21	84	6	79	15	30	32	21	1.94
41665663--41665699	18	2.1	18	100	0	74	40	21	10	27	1.86
41666169--41666577	47	8.7	46	77	9	310	24	29	19	27	1.98
41666219--41666577	47	7.7	46	79	7	352	24	29	18	26	1.98
41666263--41666575	141	2.2	141	93	1	529	24	28	19	27	1.99
41666166--41666577	94	4.4	92	79	10	347	24	29	19	27	1.98
41667399--41667481	41	2.0	41	100	0	166	45	4	30	19	1.71
41673410--41673537	63	2.0	63	100	0	256	43	10	15	29	1.81
41682423--41682484	27	2.3	27	88	0	88	20	24	12	41	1.87
41686212--41686269	24	2.4	24	91	2	98	41	3	6	48	1.47
41686211--41686257	13	3.7	13	76	23	55	42	2	6	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41692487--41692524	20	1.9	20	94	0	67	13	31	34	21	1.91
41693310--41693469	52	3.1	52	79	6	180	31	26	16	25	1.96
41696139--41696199	30	2.0	30	87	0	86	39	4	24	31	1.77
41697004--41697188	50	3.7	50	86	1	246	25	18	26	29	1.98
41698757--41698938	40	4.6	40	82	6	192	24	20	27	28	1.99
41698757--41698935	80	2.2	81	83	9	217	24	20	27	27	1.99
41698836--41698985	40	3.8	38	80	8	122	24	22	28	24	1.99
41702534--41702588	21	2.5	22	82	11	69	45	0	7	47	1.30
41702545--41702592	21	2.4	20	86	10	71	50	0	4	45	1.21
41702815--41702855	20	2.0	21	90	4	66	73	0	26	0	0.84
41704783--41705107	46	7.0	46	87	2	384	39	13	25	21	1.90
41705388--41705420	17	2.0	17	94	5	59	48	0	15	36	1.45
41712746--41712827	39	2.1	39	95	0	146	25	31	23	19	1.98
41714559--41714596	19	2.0	19	85	10	51	15	10	0	73	1.09
41717867--41717900	14	2.2	16	90	10	54	32	0	0	67	0.91
41731117--41731213	36	2.6	36	77	8	88	32	13	16	37	1.88
41732402--41732447	24	1.9	24	91	8	76	41	15	10	32	1.82
41736471--41736517	21	2.2	22	92	3	78	21	19	38	21	1.94
41737495--41737598	51	2.0	51	98	0	199	54	20	7	17	1.66
41738423--41738478	27	2.1	26	83	6	67	64	3	0	32	1.11
41738647--41738741	46	2.1	46	100	0	190	33	6	4	55	1.44
41740165--41740296	67	2.0	67	95	0	237	37	6	14	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41746804--41746897	40	2.3	40	84	12	122	29	17	25	27	1.97
41751316--41751342	14	1.9	14	100	0	54	51	14	0	33	1.43
41757559--41757588	12	2.5	12	94	0	51	10	20	40	30	1.85
41763207--41763254	25	1.9	25	87	8	71	39	10	8	41	1.69
41766678--41766707	12	2.6	11	90	10	51	26	3	0	70	1.03
41769893--41769957	31	2.1	31	100	0	130	27	3	26	43	1.70
41775150--41775841	27	25.7	27	87	0	983	34	13	14	36	1.86
41779905--41779934	10	3.0	10	90	0	51	36	0	23	40	1.55
41780588--41780617	15	1.9	16	93	6	53	53	6	20	20	1.67
41781020--41781053	18	2.0	17	88	11	52	47	2	11	38	1.55
41783954--41784078	43	2.9	43	92	2	207	29	32	24	12	1.93
41784071--41784178	38	2.8	38	88	0	153	27	27	23	21	1.99
41784895--41784968	37	2.0	37	97	0	139	45	14	5	33	1.68
41788696--41788862	40	4.2	40	83	5	207	25	22	26	25	2.00
41788696--41788862	79	2.1	79	83	8	207	25	22	26	25	2.00
41793127--41793296	46	3.7	46	76	13	186	21	21	28	28	1.99
41793124--41793294	93	1.8	93	92	0	288	21	21	28	28	1.98
41805433--41805528	2	47.5	2	91	4	149	1	52	1	45	1.14
41810422--41810663	59	4.1	59	80	2	263	25	16	12	45	1.83
41810422--41810664	117	2.1	118	82	3	285	25	16	12	44	1.83
41810758--41810971	59	3.6	59	83	0	275	25	17	12	44	1.84
41810758--41810974	118	1.8	118	87	0	326	25	17	12	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41810448--41811052	310	2.0	309	94	0	1057	26	15	12	44	1.82
41812514--41812550	19	1.9	19	88	0	56	32	16	35	16	1.91
41812629--41812746	28	4.2	29	74	8	109	29	13	28	27	1.94
41812633--41812744	57	2.0	57	80	7	129	29	14	29	26	1.95
41813005--41813058	27	2.1	26	86	6	74	48	22	14	14	1.81
41813917--41814014	19	5.2	19	91	7	155	38	11	15	34	1.83
41813907--41813992	36	2.4	35	83	14	106	38	11	15	34	1.83
41813936--41813992	17	3.5	15	84	15	53	38	10	15	35	1.82
41813917--41814014	36	2.6	37	88	9	144	38	11	15	34	1.83
41819851--41819908	19	3.1	18	75	5	53	60	1	1	36	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332