genome.fa.s13.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  146  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47923792--47923974	81	2.3	80	83	6	228	28	8	20	41	1.82
47923966--47924038	27	2.7	27	91	0	119	38	6	23	31	1.81
47923885--47924005	54	2.2	54	82	2	136	33	7	20	38	1.81
47923848--47923998	81	1.9	81	83	2	196	31	6	21	40	1.79
47926995--47927023	15	1.9	15	100	0	58	37	13	20	27	1.91
47930057--47930138	43	1.9	43	89	0	128	29	14	28	28	1.95
47930200--47930269	31	2.3	31	89	0	104	54	20	8	17	1.68
47931015--47931043	13	2.1	14	93	6	51	55	10	0	34	1.34
47935122--47935164	19	2.3	19	88	4	61	30	13	20	34	1.92
47936188--47936294	9	12.1	9	70	13	62	33	1	19	44	1.62
47936205--47936365	34	4.5	36	84	10	204	34	1	15	49	1.53
47936211--47936365	74	2.2	72	88	4	224	34	1	14	49	1.52
47936296--47936352	13	4.3	13	75	20	64	35	1	10	52	1.46
47936358--47936383	9	2.9	9	100	0	52	23	0	23	53	1.46
47941645--47942247	47	12.7	47	95	1	1037	32	8	29	29	1.87
47942366--47942444	37	2.1	37	90	0	122	24	18	31	25	1.98
47944382--47944410	8	3.8	8	95	4	51	27	0	31	41	1.56
47944796--47944956	41	3.9	41	81	3	173	24	18	20	37	1.94
47944790--47944956	82	2.0	82	82	4	203	23	17	20	38	1.93
47945690--47945751	26	2.3	26	83	8	81	43	22	17	16	1.87
47947091--47947448	93	3.8	94	78	10	351	27	21	29	21	1.99
47947091--47947399	47	6.7	45	71	14	184	26	21	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47952240--47952441	29	7.0	29	77	7	142	23	27	12	36	1.91
47952312--47952525	29	7.4	29	80	2	189	24	27	12	35	1.91
47952254--47952499	115	2.1	116	89	1	368	23	27	12	36	1.91
47988001--47988049	25	2.0	25	95	0	89	12	24	32	30	1.92
47987934--47988141	102	2.0	102	90	5	332	18	19	30	31	1.96
47988062--47988210	70	2.1	70	92	0	244	22	17	29	30	1.97
47989101--47989160	29	2.1	28	90	9	95	38	25	18	18	1.93
47996310--47996377	29	2.3	29	85	5	93	27	30	13	27	1.94
47996479--47996557	29	2.7	30	82	13	110	29	30	15	25	1.96
48003342--48003384	21	2.2	20	84	15	56	16	4	18	60	1.52
48005742--48005813	18	3.9	18	67	24	51	34	0	4	61	1.16
48010209--48010242	10	3.3	10	84	8	50	29	8	8	52	1.62
48016910--48017022	27	4.2	27	82	7	131	15	23	22	38	1.93
48016910--48017022	54	2.1	54	86	3	156	15	23	22	38	1.93
48020570--48020658	32	2.8	32	75	13	83	29	6	24	39	1.81
48020797--48020887	26	3.5	26	75	8	103	25	10	28	35	1.90
48020822--48020908	27	3.3	27	73	9	97	27	11	24	36	1.90
48020797--48020912	53	2.2	53	98	0	223	26	11	26	35	1.90
48027353--48027414	31	2.0	31	100	0	124	32	6	6	54	1.51
48031355--48031408	21	2.7	20	77	11	56	35	11	12	40	1.79
48046322--48046610	96	3.0	97	79	2	339	25	25	18	30	1.98
48046322--48046603	48	5.9	48	76	3	262	25	25	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48048733--48048782	20	2.5	20	90	0	73	34	12	32	22	1.90
48052994--48053157	42	3.9	42	84	6	206	31	15	23	29	1.95
48052994--48053152	85	1.9	84	85	6	223	31	15	23	29	1.95
48070727--48071097	62	6.2	61	82	11	475	66	4	13	15	1.40
48070861--48071129	110	2.5	109	85	4	373	66	4	14	14	1.40
48070924--48071020	48	2.0	48	88	5	144	65	6	15	12	1.43
48070861--48071129	109	2.5	108	84	6	364	66	4	14	14	1.40
48072222--48072263	17	2.5	17	88	7	59	38	0	2	59	1.10
48072236--48072332	17	5.8	16	69	25	67	36	2	4	57	1.29
48072238--48072370	67	1.9	67	86	7	185	36	3	6	54	1.42
48073605--48073660	27	2.1	27	96	0	103	39	0	17	42	1.50
48073869--48073906	3	12.7	3	100	0	76	34	0	0	65	0.93
48074820--48074911	40	2.3	39	83	1	103	34	10	18	35	1.86
48074843--48074926	40	2.1	40	81	0	96	34	9	15	40	1.80
48075129--48075239	45	2.5	45	80	2	125	23	17	15	44	1.86
48085147--48085382	55	4.4	54	75	10	200	21	25	18	34	1.96
48097613--48097658	22	2.1	22	84	8	58	56	2	19	21	1.52
48103158--48103214	23	2.5	23	79	0	78	28	26	8	36	1.86
48103192--48103233	14	3.0	14	78	0	57	35	30	9	23	1.87
48105862--48105902	14	2.9	14	77	0	55	36	31	9	21	1.86
48109377--48109529	63	2.3	64	82	8	175	24	27	19	28	1.99
48109377--48109529	66	2.3	63	81	8	164	24	27	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48110524--48110568	22	2.0	22	91	0	72	33	2	15	48	1.57
48114295--48114339	22	2.0	22	91	0	72	33	2	15	48	1.57
48121429--48121565	40	3.4	40	95	0	247	29	30	18	21	1.97
48125593--48125720	46	2.8	46	90	0	202	21	21	28	28	1.99
48132278--48132445	39	4.3	39	92	0	273	24	24	27	23	2.00
48136706--48136748	16	2.7	16	81	0	59	53	20	18	6	1.67
48136961--48137073	29	4.0	29	84	6	124	27	15	30	27	1.96
48136972--48137082	57	1.9	58	85	1	152	27	15	30	27	1.96
48143990--48144050	30	2.0	30	90	0	95	29	24	6	39	1.80
48145109--48145178	29	2.4	29	85	4	88	27	17	31	24	1.97
48147441--48147477	18	2.1	18	90	5	58	37	16	0	45	1.47
48149290--48149383	27	3.5	27	81	8	86	30	10	14	43	1.80
48149307--48149396	27	3.3	26	81	7	81	31	6	20	42	1.77
48159566--48159883	46	6.7	46	73	13	170	24	30	17	27	1.97
48161711--48161786	39	1.9	39	94	0	134	39	32	11	15	1.84
48167766--48167945	46	3.9	46	73	9	168	23	27	18	30	1.98
48170169--48170255	27	3.2	27	91	3	140	32	14	20	32	1.93
48175990--48176165	46	3.8	45	78	10	185	21	19	28	29	1.98
48175986--48176157	93	1.8	93	93	0	299	21	20	29	28	1.98
48178903--48179015	29	4.0	29	78	11	117	28	27	14	30	1.95
48180343--48180376	16	2.1	16	94	0	59	14	5	32	47	1.69
48182561--48182766	43	4.8	45	75	15	195	32	21	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48182577--48182738	81	2.0	83	85	2	220	30	22	16	31	1.95
48184936--48184960	13	1.9	13	100	0	50	68	8	16	8	1.38
48190229--48190379	67	2.3	66	83	3	205	47	11	11	29	1.75
48193005--48193134	42	3.1	42	80	6	154	32	26	13	28	1.93
48200322--48200451	66	1.9	67	84	10	174	34	16	29	20	1.94
48203851--48203902	25	2.1	25	89	3	79	25	19	23	32	1.97
48203950--48204010	21	2.9	21	85	4	88	32	19	11	36	1.88
48203950--48204010	10	5.9	10	77	11	61	32	19	11	36	1.88
48207640--48207897	56	4.7	56	81	4	290	34	22	13	29	1.93
48207644--48207897	110	2.3	111	85	2	341	34	22	13	29	1.92
48211861--48211932	28	2.6	28	84	6	92	30	36	9	23	1.87
48217314--48217571	55	4.6	56	83	2	342	35	23	12	29	1.91
48217316--48217571	111	2.3	111	89	5	383	35	23	11	29	1.90
48219002--48219072	24	3.1	21	75	18	70	19	21	19	39	1.93
48218993--48219094	23	4.4	22	75	15	80	21	19	18	40	1.92
48222606--48222638	15	2.3	15	89	5	50	42	21	15	21	1.89
48246896--48246993	42	2.4	42	96	1	180	26	39	17	16	1.90
48252011--48252196	40	4.7	40	86	5	234	25	21	26	25	1.99
48252011--48252196	80	2.3	82	87	5	265	25	21	26	25	1.99
48252011--48252229	80	2.7	79	82	7	230	26	21	26	25	1.99
48254354--48254586	50	4.7	50	80	4	256	30	26	18	25	1.98
48257831--48257860	14	2.1	15	93	6	53	13	10	13	63	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48263105--48263133	7	4.3	7	91	8	51	13	0	0	86	0.58
48263105--48263133	13	2.1	14	93	6	51	13	0	0	86	0.58
48265632--48265661	14	2.1	15	93	6	53	13	10	13	63	1.52
48267535--48267712	28	6.4	28	91	1	261	33	28	11	27	1.91
48275899--48276076	28	6.4	28	92	1	270	33	28	11	26	1.92
48281327--48281922	96	6.2	94	94	1	967	32	8	29	29	1.87
48281327--48281922	47	12.5	47	94	2	967	32	8	29	29	1.87
48281327--48281922	145	4.2	143	94	1	1007	32	8	29	29	1.87
48282041--48282120	37	2.1	38	88	2	117	25	18	31	25	1.98
48293984--48294112	67	1.9	67	98	0	249	24	20	19	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332