Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  107  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34336637--34336821
79
2.3
81
82
7
218
25
22
27
24
2.00
34336638--34336821
40
4.6
40
80
9
198
25
22
27
24
2.00
34336690--34336854
79
2.1
79
82
6
192
27
20
27
24
1.99
34342043--34342076
11
3.2
11
83
8
52
32
38
0
29
1.58
34345149--34345201
23
2.4
22
76
20
56
9
18
1
69
1.25
34350250--34350336
34
2.6
34
81
3
95
26
24
24
25
2.00
34351786--34352043
40
6.5
40
89
2
351
26
27
23
22
1.99
34359928--34360185
40
6.5
40
90
2
360
26
27
22
22
1.99
34376123--34376307
41
4.6
41
81
4
198
27
27
20
24
1.99
34379722--34379767
19
2.4
19
85
3
56
23
34
17
23
1.96
34381008--34381041
14
2.4
14
90
0
50
23
26
5
44
1.76
34388934--34388991
10
5.7
10
76
11
64
29
27
13
29
1.94
34388934--34388994
20
3.0
20
83
9
79
27
26
13
32
1.93
34391698--34391745
14
3.4
14
85
0
60
18
31
6
43
1.75
34395133--34395204
21
3.4
21
74
16
60
75
4
18
2
1.09
34395134--34395205
37
2.0
36
84
13
94
73
4
19
2
1.12
34395275--34395356
30
2.7
31
81
5
96
65
1
21
10
1.30
34395280--34395349
24
2.9
24
74
6
61
62
1
24
11
1.36
34397459--34397555
30
3.2
30
73
2
88
29
27
13
28
1.94
34398313--34398353
20
2.0
20
100
0
82
29
24
14
31
1.95
34402712--34402867
43
3.7
43
74
3
154
29
27
19
23
1.98
34402712--34402867
85
1.8
84
81
8
190
29
27
19
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34410779--34410825
20
2.3
20
74
0
58
36
19
23
21
1.95
34410802--34410860
30
1.9
31
83
10
77
35
13
30
20
1.91
34416463--34416547
42
2.0
42
100
0
170
32
25
15
25
1.95
34423084--34423174
15
6.1
15
84
6
105
9
16
15
58
1.63
34425522--34425695
46
3.8
46
76
7
192
21
20
28
28
1.98
34425519--34425688
91
1.8
93
92
2
290
22
21
28
27
1.99
34431476--34431505
16
1.9
16
93
6
53
43
0
20
36
1.52
34432813--34432848
11
3.3
11
92
0
54
38
19
25
16
1.92
34432811--34432862
22
2.4
22
80
0
59
34
17
26
21
1.95
34436318--34436709
56
7.0
56
89
1
570
29
13
21
34
1.92
34436321--34436709
168
2.3
168
93
0
672
30
13
21
34
1.92
34441485--34441523
18
2.1
19
85
4
53
7
23
2
66
1.30
34441559--34441583
12
2.1
12
100
0
50
8
16
0
76
1.02
34441585--34441616
12
2.7
12
100
0
64
25
15
12
46
1.81
34441664--34441720
5
11.0
5
75
20
55
1
17
3
77
1.00
34441664--34441720
16
3.7
14
82
15
60
1
17
3
77
1.00
34441664--34441725
21
3.0
21
75
15
58
1
16
4
77
1.02
34444167--34444251
24
3.5
24
73
7
73
30
25
15
28
1.96
34445655--34445702
24
2.0
24
95
0
87
45
18
4
31
1.68
34445660--34445710
24
2.2
23
80
16
61
41
23
3
31
1.73
34447151--34447322
46
3.7
46
78
10
206
29
26
20
23
1.99
34447159--34447330
93
1.8
93
93
0
299
27
26
22
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34447202--34447345
46
3.1
46
71
18
127
30
25
20
23
1.98
34449398--34449437
19
2.1
19
85
0
53
25
35
17
22
1.95
34451985--34452032
11
4.5
10
76
23
53
79
0
16
4
0.89
34451985--34452032
5
9.0
5
82
17
53
79
0
16
4
0.89
34451985--34452030
22
2.1
22
88
8
67
80
0
15
4
0.86
34455146--34455185
19
2.1
19
85
0
53
25
35
17
22
1.95
34468913--34469093
87
2.1
87
98
1
355
44
8
20
26
1.79
34469479--34469503
13
1.9
13
100
0
50
8
32
36
24
1.84
34476776--34476813
11
3.5
11
92
0
58
42
18
23
15
1.89
34478447--34478654
31
6.7
31
93
0
346
28
25
16
29
1.97
34478678--34478811
42
3.2
42
94
0
241
31
20
17
31
1.95
34478968--34479028
25
2.4
25
89
5
88
26
22
22
27
1.99
34479837--34479899
27
2.3
27
81
5
74
22
22
19
36
1.95
34479955--34480196
27
8.9
27
76
8
107
30
10
18
39
1.85
34480200--34480394
27
7.2
27
84
2
239
39
7
22
30
1.82
34480200--34480394
81
2.4
81
89
1
284
39
7
22
30
1.82
34482656--34482801
31
4.7
31
94
0
249
29
27
15
27
1.96
34482825--34483000
42
4.2
42
97
0
325
33
19
15
31
1.93
34483151--34483217
25
2.7
26
76
4
75
23
20
26
28
1.99
34484146--34484251
27
3.9
27
76
14
90
29
8
19
42
1.81
34484141--34484277
56
2.5
54
80
5
141
30
8
19
40
1.82
34484193--34484357
27
6.1
27
76
11
142
29
6
21
42
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34484235--34484389
54
2.9
54
80
6
138
29
9
20
41
1.84
34484232--34484357
27
4.7
27
82
2
155
28
6
23
42
1.78
34484207--34484357
81
1.9
81
83
8
200
27
6
22
43
1.78
34484388--34484585
27
7.3
27
86
2
254
39
6
24
29
1.80
34484388--34484585
81
2.4
81
88
1
290
39
6
24
29
1.80
34485624--34485696
28
2.7
27
75
8
67
28
9
10
50
1.69
34485884--34485974
44
2.1
43
89
2
137
21
19
23
35
1.96
34490737--34490851
40
2.9
40
84
6
153
21
26
28
23
1.99
34498069--34498426
130
2.8
127
85
4
448
27
19
18
34
1.95
34498055--34498457
130
3.1
126
81
7
430
29
19
18
32
1.95
34506604--34506891
47
6.1
47
87
0
405
32
11
29
27
1.91
34506625--34506931
94
3.3
94
85
2
393
33
11
28
26
1.91
34506603--34506882
141
2.0
141
93
0
479
32
11
29
27
1.91
34506625--34506940
141
2.2
139
88
3
411
33
11
28
26
1.91
34507094--34507279
37
5.1
37
91
0
284
23
18
32
25
1.97
34510290--34510314
8
3.1
8
100
0
50
52
0
24
24
1.48
34510677--34510846
43
4.0
42
73
11
139
25
16
25
32
1.96
34510677--34510784
44
2.5
42
79
10
119
26
16
22
34
1.95
34511490--34511551
27
2.3
26
91
2
79
40
3
30
25
1.72
34518429--34518484
27
2.1
27
96
0
103
51
16
7
25
1.69
34519089--34519279
55
3.4
56
86
2
269
35
23
13
28
1.92
34521269--34521457
56
3.4
56
91
1
317
35
24
14
25
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34521784--34521812
15
1.9
15
100
0
58
48
13
0
37
1.43
34522728--34523073
177
2.0
177
91
0
566
23
17
26
32
1.97
34529208--34529385
27
6.6
27
83
3
205
26
15
28
29
1.96
34529209--34529364
82
1.9
81
88
3
233
26
15
28
29
1.96
34529205--34529385
82
2.2
81
83
2
229
27
15
27
29
1.96
34537317--34537494
27
6.6
27
83
3
205
26
15
28
29
1.96
34537318--34537473
82
1.9
81
88
3
233
26
15
28
29
1.96
34537314--34537494
82
2.2
81
83
2
229
27
15
27
29
1.96
34545436--34545613
27
6.6
27
83
3
205
26
15
28
29
1.96
34545437--34545592
82
1.9
81
88
3
233
26
15
28
29
1.96
34545433--34545613
82
2.2
81
83
2
229
27
15
27
29
1.96
34560280--34560327
23
2.1
23
100
0
96
47
0
18
33
1.49
34563201--34563250
26
1.9
26
95
0
91
30
20
18
32
1.96
34563201--34563261
26
2.3
26
88
0
86
29
18
19
32
1.95
34565422--34565474
13
4.2
13
76
13
58
81
1
11
5
0.94
34565431--34565479
11
4.6
11
82
12
50
81
2
12
4
0.91
34565471--34565510
22
1.9
21
85
10
55
70
2
20
7
1.24
34572543--34572568
9
2.9
9
100
0
52
69
11
0
19
1.18
34574137--34574194
27
2.1
28
84
9
75
6
15
0
77
0.97
34576456--34576490
13
2.7
13
86
0
52
48
8
2
40
1.49
34578815--34578964
67
2.2
67
81
8
171
32
17
28
21
1.96
34578839--34579018
67
2.8
64
77
9
186
30
17
29
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34587712--34587757
21
2.2
21
84
7
58
63
2
26
8
1.35
34587703--34587802
17
5.8
17
67
23
57
63
2
26
9
1.35
34596989--34597048
30
2.0
30
90
0
93
28
25
5
41
1.76
34607405--34607478
30
2.4
30
77
20
82
74
1
18
5
1.08
34607446--34607493
13
3.5
14
83
11
64
72
0
20
6
1.05
34610041--34610177
46
3.0
46
81
0
166
24
32
9
33
1.88
34610185--34610367
47
3.9
47
91
2
287
26
30
10
32
1.90
34610191--34610367
94
1.9
94
95
0
318
26
29
10
32
1.90
34610347--34610386
19
2.1
19
90
0
62
30
27
7
35
1.84
34610300--34610433
66
2.0
66
94
0
232
26
27
11
34
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332