genome.fa.s13.2.7.7.80.10.50.1000.281.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  281  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93919758--93919814	29	2.0	29	92	0	96	33	0	0	66	0.92
93919846--93919941	3	31.0	3	71	24	58	30	1	0	68	0.96
93919845--93919946	35	2.8	36	80	15	120	31	0	0	66	1.05
93919857--93919939	7	12.1	7	77	20	79	27	1	0	71	0.94
93919882--93919936	4	14.2	4	75	12	53	25	0	0	74	0.82
93919950--93920011	21	2.9	21	74	11	63	46	3	1	48	1.28
93920250--93920288	19	2.1	19	85	9	53	20	2	7	69	1.26
93921343--93921376	17	2.1	16	88	5	50	52	14	0	32	1.42
93922131--93922224	30	3.5	28	86	13	126	65	9	7	17	1.43
93922146--93922232	30	2.9	30	91	8	135	65	11	6	16	1.45
93923218--93923258	16	2.5	17	84	4	57	70	9	0	19	1.14
93923316--93923348	15	2.2	15	94	0	57	42	3	6	48	1.43
93923443--93923505	23	2.8	24	81	11	80	57	0	0	42	0.99
93923453--93923508	10	5.2	10	75	23	51	58	0	0	41	0.98
93930065--93930106	20	2.2	19	87	12	59	45	0	4	50	1.23
93930169--93930222	21	2.5	22	81	6	65	35	5	0	59	1.21
93930172--93930223	14	3.6	14	75	12	52	32	5	0	61	1.20
93930192--93930261	33	2.1	35	84	10	92	32	4	1	61	1.24
93934450--93934523	29	2.6	27	72	16	69	41	4	13	40	1.63
93934581--93934650	28	2.4	29	80	15	74	34	4	11	50	1.58
93934580--93934728	77	1.9	76	81	9	178	38	4	10	46	1.60
93935035--93935085	17	2.9	18	77	13	54	25	5	21	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93941275--93941361	42	2.1	42	93	0	147	36	20	25	17	1.94
93944982--93946277	44	29.5	44	84	1	1373	32	13	25	28	1.94
93947743--93947785	20	2.2	19	88	12	61	46	0	4	48	1.22
93947835--93947902	21	3.3	22	82	10	72	35	4	0	60	1.17
93947872--93947941	33	2.1	35	84	10	92	32	4	1	61	1.24
93952122--93952195	29	2.6	29	75	12	73	41	4	13	40	1.63
93952677--93952727	17	2.9	18	77	13	54	25	5	21	47	1.73
93956794--93956823	15	2.1	15	93	6	53	30	6	26	36	1.82
93964321--93964399	28	2.6	32	78	13	94	37	2	8	50	1.47
93966231--93966302	21	3.3	21	66	17	56	25	15	23	36	1.94
93966235--93966321	45	1.9	45	95	0	156	25	13	25	35	1.93
93970509--93970564	27	2.1	27	86	6	78	25	14	23	37	1.92
93983842--93983971	56	2.4	55	76	7	129	43	16	6	33	1.72
93983997--93984093	27	3.6	27	70	10	81	36	16	22	24	1.94
93983997--93984108	27	4.2	27	69	13	72	34	17	22	25	1.96
93984839--93984870	16	2.0	16	93	0	55	31	18	15	34	1.93
93984901--93985007	25	4.4	24	85	3	135	29	21	22	26	1.99
93984901--93984994	25	3.8	25	88	1	136	27	23	22	26	1.99
93985213--93985384	31	5.5	31	85	5	240	28	16	25	30	1.96
93985214--93985382	93	1.8	93	90	2	277	27	16	25	30	1.97
93988412--93988476	31	2.1	31	97	0	121	13	29	24	32	1.94
93989182--93989210	13	2.2	13	100	0	58	31	0	13	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93992711--93992757	23	2.0	23	83	0	58	23	31	8	36	1.85
93994885--93995056	64	2.7	64	76	7	168	24	30	16	29	1.96
93997226--93997305	6	13.7	6	89	5	101	25	2	0	72	0.97
93997646--93997673	11	2.5	11	100	0	56	57	14	28	0	1.38
94013469--94013589	42	2.9	42	74	9	120	36	23	14	24	1.93
94013473--94013626	42	3.6	42	76	9	116	35	24	15	24	1.94
94017950--94017979	14	2.1	15	93	6	53	53	13	13	20	1.72
94025122--94025156	14	2.5	14	90	9	54	57	0	0	42	0.99
94025168--94025207	17	2.4	17	83	12	55	47	2	0	50	1.14
94025112--94025213	20	5.2	20	64	29	51	50	1	0	47	1.12
94026674--94026706	3	10.7	3	93	6	57	33	0	0	66	0.92
94041771--94041826	25	2.3	24	82	11	69	46	0	5	48	1.25
94051303--94051377	30	2.6	30	75	12	93	41	1	1	56	1.16
94052393--94052431	19	2.1	19	100	0	78	15	10	15	58	1.62
94060205--94060377	27	6.4	27	89	1	233	25	21	17	34	1.96
94060205--94060379	81	2.2	80	89	5	271	25	21	17	34	1.95
94071756--94072026	96	2.8	96	81	3	314	22	29	20	27	1.98
94071756--94072035	48	5.9	48	77	5	253	23	29	20	27	1.98
94075037--94075129	25	3.8	24	79	13	109	22	21	22	33	1.97
94074994--94075144	25	6.0	25	70	21	75	19	22	21	35	1.96
94083162--94083193	14	2.4	14	90	10	50	68	0	3	28	1.04
94083164--94083218	20	2.9	18	86	8	65	70	0	1	27	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94083181--94083228	21	2.3	19	80	16	51	64	0	4	31	1.12
94083547--94083609	31	2.0	31	93	0	108	26	23	4	44	1.73
94102264--94102355	5	17.6	5	73	20	66	76	1	4	18	1.02
94102264--94102360	49	2.0	49	82	8	117	76	1	4	18	1.01
94108757--94108935	27	6.6	27	87	0	241	40	19	6	32	1.78
94108915--94109006	27	3.4	27	92	0	139	39	19	9	31	1.84
94108779--94109016	54	4.4	52	79	6	165	39	20	7	32	1.80
94108757--94108962	81	2.5	81	82	4	220	40	19	7	32	1.79
94108809--94109017	81	2.6	81	79	5	208	40	21	7	31	1.80
94108998--94109195	27	7.3	27	86	0	216	34	22	5	37	1.77
94109190--94109384	27	7.3	27	89	0	230	38	18	18	24	1.93
94109810--94109874	22	3.0	22	77	8	69	20	21	23	35	1.96
94110033--94110106	27	2.8	27	89	2	105	17	22	21	37	1.94
94110272--94110362	6	14.8	6	72	17	71	18	19	15	46	1.84
94110254--94110353	31	3.2	31	88	0	146	19	20	15	46	1.85
94112290--94112468	27	6.6	27	90	0	268	39	20	8	30	1.83
94112290--94112566	54	5.1	54	80	6	258	38	21	9	30	1.85
94112545--94112728	27	6.8	27	89	0	251	31	23	6	38	1.80
94112290--94112738	27	16.6	27	84	2	233	36	22	8	33	1.83
94112723--94112890	27	6.2	27	91	0	219	38	18	18	25	1.93
94112723--94112918	81	2.4	81	84	0	241	38	17	18	25	1.93
94113343--94113396	22	2.5	22	73	11	56	22	22	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94113588--94113639	27	1.9	27	96	0	95	19	23	21	36	1.95
94113805--94113895	6	14.8	6	72	17	71	18	17	15	48	1.82
94113787--94113886	31	3.2	31	89	0	155	20	18	14	48	1.82
94118298--94118322	11	2.3	11	100	0	50	8	16	16	60	1.58
94123273--94123381	28	3.9	27	78	8	112	22	27	20	29	1.98
94123281--94123460	56	3.2	56	82	4	231	25	28	16	28	1.97
94123302--94123460	54	2.9	55	83	5	205	25	28	15	30	1.96
94123306--94123460	28	5.6	28	75	11	140	25	29	14	29	1.95
94134501--94134558	28	2.1	28	96	0	107	44	10	20	24	1.82
94144396--94144432	18	2.1	18	94	0	65	35	2	10	51	1.51
94147305--94147437	28	4.8	28	85	3	178	23	13	30	33	1.93
94152058--94152087	13	2.3	13	94	0	51	63	0	26	10	1.26
94163213--94163474	79	3.3	80	89	5	372	25	28	22	24	1.99
94163211--94163474	40	6.6	39	83	5	291	25	28	21	24	1.99
94163211--94163474	119	2.2	121	83	7	344	25	28	21	24	1.99
94171375--94171637	39	6.6	39	81	4	296	25	27	21	24	1.99
94171377--94171637	79	3.3	80	89	4	363	25	27	21	24	1.99
94176466--94176505	18	2.2	19	95	4	73	42	5	5	47	1.47
94182105--94182144	21	2.0	20	85	14	55	25	25	7	42	1.80
94185972--94186050	28	2.8	28	80	7	88	62	1	5	31	1.25
94186004--94186093	39	2.3	38	77	9	94	60	2	5	32	1.32
94186018--94186088	19	3.6	19	71	17	56	61	2	5	29	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94185928--94186093	9	17.2	10	66	21	61	63	1	4	30	1.24
94186259--94186317	20	3.0	19	76	13	66	30	1	3	64	1.20
94186484--94186713	87	2.6	86	75	10	189	36	7	15	40	1.75
94187285--94187310	12	2.2	12	100	0	52	69	23	0	7	1.14
94189890--94190034	21	7.0	21	66	25	62	40	0	4	54	1.27
94189968--94190119	26	6.0	26	68	21	90	41	0	3	54	1.21
94190097--94190262	38	4.3	38	64	24	103	42	1	4	52	1.28
94190166--94190197	16	2.0	16	93	0	55	40	0	0	59	0.97
94190064--94190337	117	2.3	119	95	2	498	43	0	3	52	1.24
94189897--94190319	102	4.0	104	87	10	558	42	0	4	52	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332