Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  12  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3426600--3426661
20
3.2
20
66
22
51
62
1
3
32
1.20
3426590--3426672
38
2.2
38
80
6
87
60
3
4
31
1.35
3429751--3429797
21
2.2
22
92
3
78
21
19
38
21
1.94
3434658--3434720
23
2.7
25
77
18
73
34
0
1
63
1.04
3435737--3435784
24
2.0
24
100
0
96
37
12
25
25
1.91
3436931--3436979
22
2.2
22
81
0
62
61
2
2
34
1.19
3437325--3437377
23
2.3
23
83
3
72
50
0
15
33
1.44
3440621--3440703
33
2.5
32
88
1
121
30
13
25
31
1.93
3442903--3442937
17
2.1
17
88
0
52
31
8
5
54
1.54
3445247--3445283
4
9.2
4
100
0
74
0
24
0
75
0.80
3448774--3448802
12
2.4
12
100
0
58
20
44
27
6
1.77
3453860--3453926
34
2.0
34
100
0
134
32
2
23
40
1.70
3454609--3454783
45
4.0
45
88
3
232
23
20
29
26
1.99
3456044--3456170
64
2.0
63
85
1
173
22
23
13
40
1.90
3464913--3465032
53
2.3
53
88
2
170
29
22
18
30
1.97
3468155--3468308
21
7.3
21
70
4
105
42
18
22
16
1.89
3468157--3468312
42
3.7
42
77
5
156
44
17
21
16
1.87
3474093--3474125
16
2.1
16
88
5
50
36
0
3
60
1.12
3481476--3481529
16
3.5
15
73
16
56
68
0
0
31
0.90
3481478--3481527
15
3.1
16
78
18
59
70
0
0
30
0.88
3481893--3481955
25
2.6
24
79
2
63
38
3
1
57
1.24
3481969--3482024
25
2.2
25
78
6
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3482020--3482064
13
3.1
16
76
23
55
57
0
0
42
0.98
3482083--3482119
15
2.6
15
83
8
51
48
0
0
51
1.00
3490161--3490230
30
2.3
30
85
4
97
31
4
7
57
1.45
3490825--3490949
62
2.0
63
83
6
157
30
16
9
44
1.79
3493881--3493909
14
2.1
14
100
0
58
37
20
13
27
1.91
3498755--3498829
32
2.3
32
84
8
91
41
26
14
17
1.88
3504004--3504049
21
2.2
21
84
7
58
36
8
4
50
1.53
3511538--3511598
22
2.8
21
87
2
77
39
3
1
55
1.26
3517585--3517646
21
3.0
21
88
11
85
61
4
0
33
1.17
3517601--3517694
48
2.0
48
81
8
111
56
4
0
39
1.19
3519239--3519264
4
6.5
4
100
0
52
23
0
0
76
0.78
3528486--3528523
16
2.4
16
86
0
58
57
0
2
39
1.12
3529535--3529604
29
2.3
30
79
11
72
55
7
8
28
1.56
3534249--3534323
23
3.3
23
96
0
132
33
28
21
17
1.96
3541627--3541701
23
3.3
23
96
0
132
33
28
21
17
1.96
3552937--3552971
17
1.9
19
88
11
56
51
5
5
37
1.50
3554264--3554292
15
1.9
15
100
0
58
48
17
13
20
1.81
3557635--3557675
21
2.0
21
90
0
64
19
29
21
29
1.98
3569927--3569960
17
2.1
17
88
5
52
23
0
5
70
1.09
3576976--3577005
16
1.9
16
93
6
53
20
0
13
66
1.24
3579460--3579517
3
19.0
3
82
3
53
34
1
5
58
1.30
3579818--3579865
11
4.7
11
76
23
52
35
0
6
58
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3579826--3579862
18
2.1
18
94
0
65
35
0
5
59
1.20
3579818--3579889
30
2.5
30
84
8
87
34
2
5
56
1.37
3580024--3580083
24
2.4
25
75
5
59
33
3
13
50
1.58
3582111--3582145
18
1.9
18
100
0
70
51
28
14
5
1.65
3582827--3582889
19
3.2
19
77
14
65
68
0
7
23
1.16
3582827--3582889
20
3.1
21
75
6
67
68
0
7
23
1.16
3583139--3583182
22
2.0
22
87
12
65
25
9
0
65
1.21
3583178--3583275
9
10.6
9
74
21
62
29
2
2
66
1.14
3583216--3583271
20
2.8
20
83
2
69
32
1
1
64
1.14
3583150--3583275
30
4.4
30
75
16
90
29
3
1
65
1.20
3583160--3583275
57
2.1
57
82
9
141
29
3
1
65
1.19
3589566--3589610
22
2.0
22
95
0
81
17
0
17
64
1.29
3593497--3593592
51
1.9
50
97
2
183
30
4
13
52
1.59
3594405--3594469
30
2.2
30
83
10
80
60
3
3
33
1.28
3598273--3598341
30
2.3
31
79
2
77
53
15
13
17
1.73
3599536--3599568
6
5.5
6
96
0
57
36
0
12
51
1.39
3602519--3602559
14
2.9
15
82
10
50
48
0
2
48
1.14
3627583--3627748
53
3.1
53
88
6
221
25
15
28
30
1.96
3629752--3629794
19
2.3
19
87
0
59
72
0
25
2
0.97
3633981--3634027
19
2.4
19
89
3
76
48
14
10
25
1.76
3635348--3635392
23
2.0
23
82
8
56
42
2
6
48
1.41
3643042--3643443
201
2.0
201
98
0
768
30
15
15
38
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3645783--3645815
15
2.2
15
94
0
57
39
18
9
33
1.82
3652588--3652960
105
3.6
105
94
1
633
30
29
20
19
1.97
3653288--3653351
30
2.2
29
81
10
76
29
28
6
35
1.82
3653295--3653351
30
1.9
30
85
3
80
29
24
7
38
1.82
3659328--3659354
13
2.1
13
100
0
54
25
7
7
59
1.51
3661758--3662561
156
5.1
155
82
5
892
29
22
12
34
1.91
3662419--3662673
133
1.9
132
84
7
345
33
23
12
30
1.92
3667758--3667889
39
3.4
39
82
4
167
18
12
22
46
1.81
3668102--3668161
28
2.1
28
80
14
70
53
8
0
38
1.31
3671034--3671074
21
2.0
21
90
0
64
19
29
21
29
1.98
3675686--3675726
20
2.0
21
85
9
57
17
4
4
73
1.19
3676014--3676052
18
2.1
19
85
4
53
17
2
7
71
1.21
3677537--3677588
16
3.4
16
76
10
54
30
0
7
61
1.24
3680165--3680337
29
6.0
29
88
0
256
33
12
27
26
1.93
3680340--3680505
33
5.0
33
90
0
233
34
8
20
36
1.83
3684080--3684201
59
2.1
59
95
4
219
49
2
4
43
1.37
3684127--3684166
20
1.9
22
85
10
57
47
0
5
47
1.24
3684302--3684348
22
2.1
21
81
11
58
44
0
0
55
0.99
3685963--3686037
32
2.4
31
84
8
98
45
4
8
42
1.52
3694367--3694405
19
2.1
19
85
9
53
30
10
5
53
1.56
3694451--3694504
25
2.2
25
96
0
99
33
16
3
46
1.65
3695581--3695618
19
2.0
19
85
10
51
47
5
2
44
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3701730--3701773
22
2.0
22
95
0
79
31
11
22
34
1.90
3701863--3701901
18
2.2
18
90
4
62
64
0
0
35
0.94
3701862--3701910
20
2.6
19
81
12
57
61
2
0
36
1.08
3703760--3703840
41
2.0
41
92
0
135
49
20
6
23
1.71
3704144--3704182
17
2.3
17
86
8
53
30
17
7
43
1.77
3708156--3708205
26
2.0
24
88
7
73
64
6
0
30
1.18
3708176--3708234
21
2.8
21
78
12
59
69
8
0
22
1.15
3708281--3708313
15
2.1
16
88
11
50
69
0
0
30
0.88
3708785--3708843
30
2.0
30
89
0
91
52
10
0
37
1.35
3708999--3709051
26
1.9
29
88
11
85
33
1
0
64
1.05
3709018--3709058
19
2.1
20
86
4
57
36
2
0
60
1.10
3710209--3710268
23
2.7
22
75
10
59
66
1
8
23
1.28
3710875--3710913
13
3.1
12
82
13
51
61
5
0
33
1.18
3710956--3711007
27
1.9
27
88
0
77
50
1
11
36
1.50
3713380--3713440
28
2.3
26
81
13
70
34
1
1
62
1.15
3713448--3713478
16
2.0
16
93
6
55
25
0
3
70
1.02
3713454--3713528
19
4.1
18
76
13
64
22
1
5
70
1.15
3713410--3713510
17
6.1
16
69
16
64
25
2
1
69
1.13
3713444--3713510
25
2.7
25
80
15
77
22
1
2
73
1.06
3718041--3718110
24
3.0
24
74
16
67
55
1
0
42
1.08
3718599--3718664
19
3.3
21
80
16
70
30
9
1
59
1.38
3718678--3718741
10
6.3
10
78
8
67
25
3
1
70
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3718666--3718743
10
7.8
9
74
17
57
26
3
1
67
1.15
3718667--3718764
30
3.2
30
83
12
112
29
3
1
66
1.13
3718666--3718743
9
7.7
10
72
20
56
26
3
1
67
1.15
3718691--3718773
30
2.8
32
82
12
88
31
1
1
66
1.07
3721245--3721283
16
2.4
16
95
0
69
38
5
35
20
1.75
3721263--3721355
44
2.1
46
93
4
163
29
4
30
36
1.77
3728868--3728941
8
8.5
8
76
20
53
64
2
4
28
1.25
3728853--3728921
19
3.7
19
82
5
79
66
2
1
28
1.14
3728853--3728939
9
9.6
9
75
10
70
65
3
3
27
1.25
3728889--3728939
17
2.9
18
80
13
63
64
3
5
25
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332