genome.fa.s13.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  134  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43731124--43731176	10	5.1	10	77	8	52	35	0	0	64	0.94
43733298--43733695	2	205.5	2	72	9	99	37	0	59	3	1.14
43733298--43733691	10	40.5	10	69	15	159	37	0	59	3	1.14
43733326--43733691	26	14.2	27	67	15	129	36	0	59	3	1.15
43735450--43735573	61	2.0	61	100	0	248	41	12	14	31	1.84
43757079--43757289	40	5.3	40	88	1	246	23	20	27	28	1.99
43760905--43760967	31	2.0	32	90	3	101	38	23	0	38	1.55
43762305--43762351	22	2.2	21	82	14	53	23	0	12	63	1.28
43767120--43767634	48	10.7	48	76	6	461	29	18	27	24	1.98
43767120--43767632	144	3.6	143	82	4	516	29	18	27	24	1.98
43769493--43769527	15	2.4	15	95	4	63	74	0	25	0	0.82
43778365--43778494	47	2.8	47	85	2	163	23	15	27	33	1.95
43781508--43781683	46	3.8	46	77	12	189	20	19	29	30	1.97
43781505--43781675	93	1.8	93	91	0	279	20	19	29	29	1.97
43783882--43783944	22	2.9	22	90	0	99	38	23	23	14	1.92
43783994--43784095	27	3.8	26	76	5	96	42	19	18	19	1.90
43784264--43784344	27	3.0	27	76	5	83	43	14	18	23	1.87
43783906--43784380	247	1.9	247	97	0	896	37	18	21	21	1.94
43784751--43784912	27	6.0	27	83	2	175	30	9	20	39	1.84
43790030--43790137	43	2.5	43	84	3	137	24	15	26	33	1.95
43806256--43806347	42	2.2	42	88	0	139	34	20	14	30	1.92
43806492--43806666	26	6.8	26	88	0	255	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43806492--43806666	52	3.4	52	96	1	318	26	22	22	28	1.99
43807452--43807538	27	3.2	27	85	3	104	20	26	17	35	1.95
43807592--43807643	27	1.9	27	84	7	70	36	13	11	38	1.81
43809049--43809231	79	2.3	81	83	7	223	24	27	22	24	2.00
43809028--43809231	40	5.1	40	81	8	229	24	27	22	25	2.00
43818215--43818428	27	7.9	27	72	12	161	30	7	20	41	1.81
43818224--43818428	81	2.5	81	82	1	232	30	7	19	42	1.79
43818219--43818401	54	3.4	54	84	3	226	29	8	20	41	1.81
43818383--43818442	27	2.2	27	90	0	93	30	5	25	40	1.77
43818420--43818550	27	4.9	27	86	1	147	43	6	19	29	1.77
43818383--43818564	81	2.2	81	74	1	177	38	6	20	34	1.79
43827317--43827367	25	2.0	25	88	0	75	37	27	17	17	1.93
43831952--43832008	26	2.2	26	96	3	107	56	3	0	40	1.17
43833671--43833823	43	3.6	43	74	13	145	26	15	23	33	1.95
43847198--43847289	48	1.9	48	88	0	139	23	16	28	31	1.96
43853055--43853231	27	6.6	27	83	5	196	29	28	15	26	1.96
43853076--43853230	81	1.9	81	88	2	231	29	29	15	26	1.96
43861175--43861347	27	6.6	27	82	7	194	28	28	15	27	1.96
43867905--43868029	35	3.5	35	86	1	169	14	11	33	40	1.81
43871778--43871855	25	3.2	25	67	29	78	30	29	8	30	1.88
43871756--43872062	47	6.5	47	93	0	515	26	28	11	33	1.91
43871832--43872093	141	1.9	141	89	0	344	27	27	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43873842--43875502	829	2.0	829	99	0	3295	34	19	10	35	1.86
43878541--43878637	48	2.2	44	83	14	119	28	28	14	27	1.95
43878564--43878695	48	2.8	48	88	2	185	28	26	17	28	1.98
43878675--43878794	37	3.2	37	85	0	150	25	24	19	30	1.98
43884956--43885039	37	2.3	37	89	4	125	22	26	21	29	1.99
43887881--43888001	42	2.9	42	78	0	134	30	23	14	32	1.94
43895747--43895782	8	4.4	8	89	6	54	61	0	0	38	0.96
43901075--43901383	38	8.1	38	91	2	467	31	24	22	21	1.98
43908124--43908222	28	3.5	28	87	4	119	27	15	27	30	1.96
43911389--43911434	22	2.0	24	83	12	60	60	2	28	8	1.38
43915268--43915362	24	4.0	24	90	0	136	33	3	36	26	1.72
43916769--43916879	27	4.1	27	88	1	152	16	24	21	37	1.93
43922832--43923004	46	3.8	45	85	6	224	24	20	29	25	1.99
43922837--43923004	93	1.8	90	86	6	239	24	21	29	24	1.99
43927443--43927491	24	2.0	24	100	0	98	24	8	12	55	1.64
43932691--43932757	27	2.5	27	80	9	75	35	11	22	29	1.90
43934253--43934354	27	3.8	27	90	0	150	40	19	13	26	1.89
43934224--43934354	54	2.4	54	85	1	174	39	19	14	25	1.90
43934224--43934365	27	5.3	25	81	6	113	38	19	16	26	1.92
43937255--43937478	40	5.6	40	87	4	267	24	23	27	25	2.00
43937295--43937501	79	2.6	79	83	3	256	24	23	26	25	2.00
43943667--43943839	46	3.8	45	79	11	208	21	20	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43943662--43943831	92	1.8	92	93	0	295	21	21	28	28	1.99
43951168--43951338	93	1.8	93	93	0	297	20	21	29	29	1.98
43951173--43951347	46	3.8	46	78	10	203	20	20	29	29	1.98
43955666--43955850	40	4.6	40	91	3	257	23	23	28	24	2.00
43961039--43961074	19	1.9	18	88	5	54	27	16	38	16	1.90
43961219--43961613	55	7.5	53	76	10	351	23	23	17	35	1.95
43961231--43961676	209	2.1	208	95	0	793	23	23	16	36	1.94
43961587--43961810	45	4.8	45	70	12	141	22	24	19	33	1.97
43966471--43966530	11	5.5	11	71	25	56	51	0	0	48	1.00
43966551--43966602	20	2.8	18	76	21	54	51	3	1	42	1.31
43970691--43970764	23	3.3	21	81	5	76	27	24	16	32	1.96
43970702--43970801	23	4.3	23	85	3	130	27	20	16	37	1.93
43971202--43971290	40	2.2	40	89	0	133	29	19	23	28	1.98
43971338--43971597	40	6.7	40	70	9	196	30	18	22	28	1.97
43971236--43971667	153	2.8	153	85	4	575	30	16	21	30	1.96
43972061--43972149	43	2.1	43	86	0	124	23	0	31	44	1.54
43972638--43972742	54	1.9	55	88	1	158	11	37	5	45	1.64
43974291--43974326	18	2.0	18	100	0	72	33	11	27	27	1.91
43975018--43975053	19	1.9	18	88	5	54	22	8	22	47	1.77
43976703--43976854	43	3.5	43	80	7	191	26	13	25	34	1.93
43976703--43976860	86	1.8	86	87	0	235	25	13	25	34	1.93
43979964--43979996	17	1.9	17	88	11	50	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43980006--43980133	61	2.1	61	84	5	161	39	4	11	44	1.62
43983600--43983636	18	2.1	18	89	0	56	27	5	10	56	1.55
43984139--43984172	17	1.9	17	88	5	50	47	5	14	32	1.69
43984213--43984245	17	1.9	17	93	0	57	36	27	24	12	1.91
43984317--43984399	31	2.6	31	82	3	94	60	19	4	15	1.53
43984665--43984704	21	1.9	21	84	0	53	2	50	17	30	1.59
43985116--43985144	14	2.1	14	93	6	51	58	6	0	34	1.25
43988036--43988223	40	4.7	40	87	3	281	25	25	22	27	2.00
43990294--43990367	29	2.6	29	86	4	96	27	16	31	25	1.96
43998427--43998500	29	2.6	29	82	4	87	28	14	31	25	1.95
44003172--44003196	12	2.1	12	100	0	50	32	28	8	32	1.86
44005066--44005378	9	35.4	9	79	5	316	36	2	12	48	1.54
44005075--44005378	44	6.9	44	90	2	468	36	2	12	48	1.54
44005490--44005575	15	5.9	15	74	15	90	54	0	1	44	1.07
44005502--44005575	29	2.6	29	95	0	130	52	0	1	45	1.09
44005749--44005819	24	3.0	24	89	0	106	45	8	16	29	1.77
44005867--44006048	63	2.9	64	94	2	314	47	2	9	40	1.51
44006517--44006542	13	2.0	13	100	0	52	38	38	7	15	1.76
44006566--44006639	22	3.2	22	75	11	60	52	0	0	47	1.00
44008136--44008173	13	2.8	13	96	4	67	42	0	31	26	1.56
44009496--44009673	39	4.6	39	92	0	284	30	26	20	21	1.98
44012563--44012743	40	4.6	40	80	8	165	25	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44012560--44012731	79	2.2	80	80	8	199	25	22	26	25	2.00
44016364--44016418	28	2.0	28	100	0	110	36	14	23	25	1.93
44020566--44020743	39	4.6	39	92	0	284	30	25	21	21	1.99
44022994--44023032	16	2.4	16	95	0	69	33	7	30	28	1.85
44023459--44023501	20	2.2	20	87	4	61	30	4	11	53	1.57
44023834--44023868	18	1.9	18	94	0	61	34	20	14	31	1.92
44023872--44023993	40	3.0	40	96	0	217	31	17	10	40	1.83
44025060--44025102	22	2.0	22	85	0	59	46	0	11	41	1.40
44025768--44025827	21	2.9	21	87	0	84	30	41	0	28	1.56
44025768--44025834	21	3.2	21	82	4	82	31	38	0	29	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332