genome.fa.s13.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  143  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47004040--47004122	27	3.2	26	74	3	78	22	20	19	37	1.94
47004310--47004408	33	3.0	33	83	0	126	24	21	26	28	1.99
47006329--47006377	23	2.1	23	92	0	80	34	0	26	38	1.57
47006912--47007014	52	2.0	51	84	1	134	29	22	12	35	1.91
47008244--47008275	16	2.1	16	94	5	57	56	0	18	25	1.42
47008928--47008976	22	2.2	22	85	7	64	46	42	0	10	1.37
47010387--47010461	34	2.2	34	83	4	89	26	24	22	26	2.00
47018192--47018280	34	2.6	34	85	0	124	24	24	23	26	2.00
47024540--47024597	25	2.3	25	90	0	98	22	22	24	31	1.99
47024540--47024662	25	4.9	25	79	7	97	24	20	21	33	1.97
47024565--47024668	50	2.1	50	82	7	122	25	19	22	33	1.97
47024580--47024672	25	3.7	25	76	12	84	26	19	21	32	1.97
47030943--47030979	17	2.1	18	95	5	67	13	35	35	16	1.88
47033111--47033136	13	2.0	13	100	0	52	23	30	30	15	1.95
47037961--47038071	40	2.8	40	81	1	132	27	13	27	32	1.94
47045745--47045795	24	2.1	25	100	0	88	39	7	19	33	1.81
47052780--47053269	47	10.4	47	93	1	811	32	8	29	29	1.87
47052780--47053269	190	2.6	190	93	1	810	32	8	29	29	1.87
47052784--47053269	237	2.1	236	93	1	832	32	8	29	29	1.87
47053388--47053466	37	2.1	37	88	4	115	25	18	30	25	1.98
47062476--47062681	39	5.2	40	84	5	251	24	24	26	24	2.00
47062472--47062656	79	2.3	79	86	3	248	24	24	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47062472--47062681	79	2.7	77	81	8	244	25	23	26	24	2.00
47070465--47070679	40	5.4	40	84	3	240	26	22	26	24	2.00
47070459--47070679	119	1.9	119	83	7	288	27	22	25	24	2.00
47076050--47076083	14	2.3	15	90	10	52	79	5	2	11	1.02
47076047--47076084	15	2.5	15	84	16	51	81	5	2	10	0.94
47086056--47086099	22	2.0	22	82	8	54	59	18	4	18	1.55
47087814--47087879	33	2.0	33	96	0	123	30	13	24	31	1.94
47099728--47099839	40	2.8	40	86	6	149	25	25	23	25	2.00
47105069--47105249	40	4.6	40	89	0	265	25	24	23	25	2.00
47112136--47112215	27	2.9	27	83	10	101	32	23	3	40	1.73
47112617--47112915	27	11.1	27	80	4	289	27	20	10	41	1.84
47112920--47113096	27	6.6	27	85	2	230	36	17	19	25	1.94
47113316--47113368	27	2.0	27	92	0	88	18	24	20	35	1.95
47113431--47113489	22	2.7	22	81	0	64	20	25	22	32	1.98
47115395--47115626	40	5.8	40	89	2	306	22	23	28	25	1.99
47117180--47117311	6	21.8	6	70	21	89	21	15	12	50	1.77
47117180--47117311	30	4.4	30	94	2	221	21	15	12	50	1.77
47117180--47117349	60	2.8	60	82	9	202	21	15	12	50	1.77
47118260--47118497	49	4.8	50	83	2	282	26	17	26	30	1.97
47118357--47118440	28	3.2	28	65	25	83	23	16	29	29	1.96
47121365--47121401	20	1.9	18	89	10	56	43	0	21	35	1.53
47126876--47126956	42	1.9	43	85	7	112	22	19	25	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47136989--47137044	28	2.0	28	82	10	69	23	46	14	16	1.83
47140034--47140080	25	1.9	25	83	12	62	55	0	34	10	1.35
47142315--47142432	43	2.8	43	81	1	157	25	15	24	34	1.94
47143834--47143945	55	2.0	55	89	0	170	26	10	19	42	1.84
47150001--47150157	43	3.6	44	76	12	155	25	17	24	31	1.97
47150013--47150138	42	2.9	43	79	8	132	26	16	23	33	1.96
47158171--47158216	21	2.2	21	84	7	58	39	10	10	39	1.76
47160191--47160246	28	2.0	28	82	0	67	32	8	0	58	1.29
47160684--47160724	21	2.0	21	90	0	64	21	2	2	73	1.07
47160749--47160813	15	4.2	15	77	16	62	29	4	0	66	1.12
47163336--47163495	42	3.9	41	78	10	139	31	14	22	31	1.94
47163665--47163694	15	1.9	16	93	6	53	33	0	26	40	1.57
47165433--47165604	85	2.0	85	94	0	299	27	22	6	43	1.79
47169574--47169794	40	5.6	41	77	9	219	25	23	26	24	2.00
47176299--47176519	40	5.6	41	76	9	210	25	23	26	24	2.00
47180389--47180562	46	3.8	45	75	17	160	21	18	28	31	1.97
47180385--47180555	93	1.8	93	89	2	272	21	19	29	29	1.97
47194682--47194809	66	1.9	65	84	6	168	32	17	29	20	1.96
47195135--47195245	55	2.0	55	100	0	222	40	7	25	27	1.81
47197947--47198209	40	6.6	40	83	5	320	25	27	22	25	2.00
47197948--47198209	79	3.3	79	88	4	350	24	27	22	25	2.00
47197947--47198209	119	2.2	121	84	8	335	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47205998--47206248	39	6.6	39	75	15	217	25	27	22	25	2.00
47205998--47206193	107	1.9	106	84	7	265	26	27	20	25	1.99
47206092--47206249	79	2.0	79	84	7	205	24	27	22	25	2.00
47208566--47208730	43	3.9	41	79	6	159	24	18	25	31	1.97
47211389--47211499	54	2.1	54	83	6	136	36	20	23	19	1.95
47211390--47211499	27	4.0	28	82	3	118	36	20	22	20	1.95
47213428--47213619	40	4.8	40	92	1	226	27	27	21	23	1.99
47213399--47213618	80	2.8	80	81	4	248	28	27	20	23	1.99
47219191--47219225	17	2.0	18	94	5	63	17	42	34	5	1.73
47219192--47219240	17	2.8	17	82	11	55	22	38	30	8	1.83
47220092--47220139	25	1.9	25	100	0	96	45	4	25	25	1.71
47230095--47230211	41	2.9	41	69	14	100	31	25	19	23	1.98
47233538--47233779	29	8.4	29	79	9	221	38	25	14	21	1.91
47233530--47233779	57	4.4	57	83	4	279	39	24	15	20	1.91
47234251--47234289	18	2.3	16	82	8	51	53	0	5	41	1.23
47235164--47235239	31	2.5	31	86	0	98	34	17	22	26	1.96
47235218--47235407	56	3.4	56	87	2	265	28	15	23	33	1.95
47235218--47235438	112	2.0	111	82	5	266	27	14	23	33	1.94
47235638--47235673	18	1.9	19	88	5	56	47	0	16	36	1.47
47237998--47238042	23	1.9	24	90	4	74	24	51	2	22	1.60
47238316--47238524	27	7.7	27	83	2	242	39	20	14	24	1.91
47238316--47238524	81	2.6	81	85	3	269	39	20	14	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47238514--47238665	27	5.8	26	75	12	96	22	20	18	38	1.93
47238541--47238660	27	4.6	26	79	14	104	20	21	16	40	1.91
47244204--47244244	15	2.6	16	84	3	57	56	0	4	39	1.21
47245145--47245336	56	3.4	56	90	0	285	30	14	21	33	1.93
47245145--47245367	56	4.0	55	85	4	207	29	14	22	33	1.94
47245145--47245367	112	2.0	111	83	5	279	29	14	22	33	1.94
47246757--47246796	19	2.0	22	85	14	59	25	5	20	50	1.68
47256332--47256455	43	2.9	43	86	4	171	24	16	26	32	1.96
47261905--47262016	43	2.6	42	83	5	154	31	17	25	25	1.97
47268405--47268520	43	2.7	42	75	7	126	35	14	21	28	1.93
47274696--47275028	150	2.2	150	92	1	544	26	18	25	29	1.98
47274704--47275041	100	3.4	97	85	2	415	26	18	25	29	1.98
47274953--47275030	26	3.1	26	66	23	76	26	15	26	30	1.96
47274697--47275041	49	6.9	50	83	3	410	26	18	25	29	1.98
47274697--47275079	100	3.8	100	81	5	294	27	18	25	28	1.98
47276410--47276492	42	2.0	42	95	0	148	40	6	16	36	1.74
47279938--47279992	3	17.3	3	85	10	74	30	1	1	65	1.13
47280499--47280706	55	3.9	54	84	4	240	22	24	17	35	1.95
47280685--47280806	47	2.6	47	93	0	199	25	25	13	35	1.93
47287812--47287897	28	3.0	28	77	3	91	30	16	26	26	1.97
47288797--47288826	3	10.0	3	92	0	51	36	0	0	63	0.95
47295088--47295137	8	6.2	8	83	0	64	46	22	22	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47295088--47295137	16	3.1	16	85	0	73	46	22	22	10	1.81
47295362--47295469	29	3.8	29	79	6	112	29	18	26	25	1.98
47296348--47296393	3	15.7	3	95	4	85	32	0	0	67	0.91
47296902--47297109	55	3.9	54	82	4	222	23	24	16	36	1.95
47297088--47297209	47	2.6	47	93	0	199	26	23	13	36	1.93
47297072--47297344	47	5.8	46	77	9	187	24	24	17	33	1.96
47300103--47300232	64	2.0	64	89	0	197	33	24	21	20	1.97
47304583--47304699	41	2.9	41	72	8	114	30	23	17	27	1.97
47305386--47305427	11	4.1	11	82	11	54	59	0	2	38	1.10
47305386--47305427	20	2.0	20	86	13	59	59	0	2	38	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332