Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  322  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105771634--105771973
131
2.6
130
86
1
434
27
17
19
35
1.95
105783439--105783726
77
3.7
78
90
1
445
34
21
24
19
1.97
105786359--105786614
131
2.0
131
87
0
368
27
19
18
34
1.95
105787908--105787933
13
2.0
13
100
0
52
38
30
15
15
1.88
105790903--105790940
16
2.4
16
86
4
51
55
0
0
44
0.99
105792082--105792396
44
7.2
44
65
9
185
27
23
23
25
2.00
105792026--105792596
88
6.5
88
92
2
764
29
22
23
24
1.99
105793381--105793420
20
2.0
20
85
9
55
55
25
17
2
1.55
105796053--105796090
16
2.4
16
86
4
51
55
0
0
44
0.99
105801573--105801904
131
2.6
131
86
5
453
27
18
20
34
1.95
105803919--105803948
6
5.0
6
100
0
60
83
0
0
16
0.65
105815452--105815585
64
2.1
64
91
0
214
32
11
14
40
1.83
105818167--105818206
18
2.2
19
86
4
55
27
7
15
50
1.70
105819089--105819164
26
2.8
28
70
11
77
53
0
13
32
1.39
105819091--105819154
26
2.5
26
81
0
83
53
0
15
31
1.43
105819313--105819413
25
4.0
25
71
17
75
58
4
6
29
1.45
105828735--105828808
28
2.8
26
75
8
69
31
9
20
39
1.84
105830255--105830362
26
4.2
26
93
0
189
36
24
7
32
1.83
105839399--105839693
78
3.8
78
89
0
439
34
22
24
19
1.97
105842412--105842667
131
2.0
131
87
0
368
27
19
18
34
1.95
105847400--105847690
79
3.8
78
83
7
362
19
24
20
35
1.95
105931706--105931813
26
4.2
26
93
0
189
36
24
7
32
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105938724--105938831
26
4.2
26
93
0
189
36
24
7
32
1.83
105941769--105941814
17
2.7
18
87
12
62
26
4
2
67
1.21
105941802--105941859
26
2.3
26
77
19
68
34
3
5
56
1.38
105941883--105941925
18
2.4
18
84
0
59
30
11
2
55
1.48
105946952--105947012
24
2.5
24
86
5
79
34
29
16
19
1.94
105949336--105949364
9
3.3
9
95
4
51
24
24
10
41
1.86
105952199--105952250
3
19.3
3
76
21
53
38
0
0
61
0.96
105952200--105952258
5
11.6
5
78
21
61
40
0
0
59
0.97
105952199--105952252
8
6.1
8
84
16
63
38
0
0
61
0.96
105952267--105952362
40
2.3
40
89
3
147
63
8
28
0
1.23
105953069--105953126
30
1.9
30
89
0
89
41
3
24
31
1.71
105953338--105953369
13
2.5
13
94
0
55
31
0
12
56
1.37
105953464--105953705
50
4.7
50
86
4
297
26
24
29
19
1.99
105953464--105953713
100
2.4
103
88
6
364
26
24
29
20
1.99
105956147--105956174
13
2.2
13
100
0
56
21
7
25
46
1.76
105958133--105958184
3
19.3
3
76
21
53
38
0
0
61
0.96
105958134--105958192
5
11.6
5
78
21
61
40
0
0
59
0.97
105958133--105958186
8
6.1
8
84
16
63
38
0
0
61
0.96
105958201--105958296
40
2.3
40
89
3
147
63
8
28
0
1.23
105959003--105959060
30
1.9
30
89
0
89
41
3
24
31
1.71
105959272--105959303
13
2.5
13
94
0
55
31
0
12
56
1.37
105959398--105959639
50
4.7
50
86
4
297
26
24
29
19
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105959398--105959647
100
2.4
103
88
6
364
26
24
29
20
1.99
105968777--105968805
3
9.7
3
100
0
58
34
0
0
65
0.93
105969357--105969402
17
2.7
18
87
12
62
26
4
2
67
1.21
105969390--105969447
26
2.3
26
77
19
68
34
3
5
56
1.38
105969471--105969513
18
2.4
18
84
0
59
30
11
2
55
1.48
105980461--105980531
26
2.7
26
85
6
99
29
4
2
63
1.27
105980467--105980531
3
22.3
3
84
6
89
32
3
1
63
1.19
105993280--105993850
218
2.6
218
93
2
940
30
20
21
26
1.98
105993281--105993822
87
6.3
87
72
11
309
30
20
22
26
1.98
105993232--105993822
44
13.6
44
72
11
294
30
20
21
26
1.98
105994672--105994699
12
2.3
12
100
0
56
21
35
42
0
1.53
105995181--105995241
3
20.3
3
86
0
86
31
3
1
63
1.20
105997845--105997933
3
30.0
3
73
10
67
57
2
7
32
1.40
105998232--105998286
23
2.6
21
78
13
67
56
1
14
27
1.49
105999988--106000057
21
3.3
21
69
11
63
34
25
11
28
1.91
105999989--106000075
42
2.1
42
86
4
122
28
24
16
31
1.96
106000599--106000686
43
2.0
44
86
2
124
25
25
23
26
2.00
106008849--106008880
9
3.7
9
95
4
57
43
12
21
21
1.86
106012813--106012916
3
35.0
3
77
9
97
58
1
6
32
1.35
106013214--106013268
23
2.6
21
78
13
67
56
1
14
27
1.49
106019281--106019372
26
3.5
25
68
16
69
40
5
1
53
1.31
106021990--106022148
3
53.0
3
67
16
62
63
4
5
26
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106023240--106023290
22
2.3
22
96
0
93
0
25
25
49
1.51
106023775--106023934
26
6.2
26
97
0
293
31
5
26
37
1.78
106025418--106025466
25
2.0
25
84
8
64
38
20
16
24
1.92
106031082--106031189
26
4.2
26
96
0
189
30
4
26
37
1.77
106036891--106036917
7
3.9
7
100
0
54
59
0
0
40
0.98
106041663--106041712
24
2.1
23
88
3
73
18
14
0
68
1.22
106041664--106041707
11
3.8
11
80
11
52
15
13
0
70
1.17
106044736--106044777
17
2.5
17
88
7
59
54
4
7
33
1.49
106045547--106045585
16
2.4
16
91
8
62
20
5
12
61
1.50
106045544--106045591
16
2.7
19
75
24
59
16
6
12
64
1.46
106045813--106045927
30
3.9
30
79
5
110
42
2
22
32
1.67
106045924--106045969
24
1.9
24
95
0
83
28
0
2
69
1.00
106046156--106046438
78
3.7
76
79
6
290
35
17
15
31
1.91
106046348--106046755
87
4.7
87
83
4
511
37
19
15
27
1.92
106046681--106046710
14
2.1
14
93
0
51
66
3
6
23
1.30
106059796--106059831
15
2.5
15
90
4
56
19
5
11
63
1.46
106059795--106059832
14
2.5
16
83
12
53
18
5
10
65
1.41
106060046--106060100
28
2.0
28
88
0
83
38
3
18
40
1.68
106069172--106069232
17
3.8
17
76
20
60
54
3
6
36
1.43
106069991--106070029
16
2.4
16
91
8
62
20
5
12
61
1.50
106070257--106070372
30
3.9
30
78
7
112
44
3
21
30
1.69
106071211--106071253
21
2.0
21
100
0
86
23
13
48
13
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106071851--106071901
23
2.2
23
82
6
59
31
3
7
56
1.46
106072529--106072600
28
2.6
28
74
12
76
26
12
2
58
1.48
106073259--106073575
131
2.4
130
84
5
394
28
18
18
34
1.95
106075444--106075517
36
2.1
36
94
0
130
36
12
6
44
1.68
106076274--106076308
18
2.0
17
88
5
52
57
2
8
31
1.44
106081043--106081084
17
2.5
17
88
7
59
54
4
7
33
1.49
106081852--106081888
14
2.5
14
91
8
56
18
5
13
62
1.50
106081851--106081889
15
2.5
16
87
4
62
17
5
12
64
1.46
106081850--106081890
16
2.5
17
80
11
59
17
4
12
65
1.42
106082125--106082232
30
3.6
30
82
2
128
43
3
24
28
1.71
106082229--106082274
24
1.9
24
95
0
83
28
0
2
69
1.00
106082461--106082660
75
2.6
76
76
8
201
36
18
14
31
1.90
106082572--106082978
87
4.8
86
81
6
413
38
19
14
27
1.91
106095029--106095089
17
3.8
17
76
20
60
54
3
6
36
1.43
106095849--106095890
16
2.6
17
74
11
52
14
4
11
69
1.34
106096139--106096226
30
2.9
30
84
3
115
44
3
23
28
1.70
106096132--106096233
30
3.4
30
76
8
109
44
4
22
28
1.73
106096230--106096275
24
1.9
24
95
0
83
28
0
2
69
1.00
106101357--106101430
5
14.2
5
71
23
55
33
2
2
60
1.25
106101336--106101464
3
45.0
3
66
20
62
31
5
1
62
1.27
106101357--106101433
29
2.8
26
73
17
68
33
2
2
61
1.24
106101818--106101937
50
2.5
48
78
16
124
32
8
0
58
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106101974--106102029
19
2.8
20
81
13
53
37
3
3
55
1.35
106112393--106112454
30
2.1
30
93
6
108
58
14
3
24
1.51
106115215--106115297
2
41.5
2
100
0
166
50
49
0
0
1.00
106115749--106115817
21
3.3
21
69
15
54
40
17
26
15
1.89
106115763--106115890
42
3.1
40
83
8
134
41
17
21
19
1.91
106115836--106115909
20
3.7
20
81
1
85
40
17
16
25
1.90
106115820--106115903
21
4.1
21
76
4
66
41
16
17
23
1.89
106118860--106119063
85
2.4
85
88
2
284
32
17
21
28
1.96
106121476--106121528
24
2.2
24
100
0
106
47
15
11
26
1.79
106122784--106122820
2
18.5
2
100
0
74
51
0
0
48
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332