genome.fa.s13.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  141  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46193997--46194180	100	1.8	100	95	0	332	26	18	26	29	1.98
46197188--46197252	15	4.4	15	75	22	66	10	13	12	63	1.53
46199385--46199579	49	4.0	49	84	4	259	26	18	26	28	1.98
46199378--46199573	100	2.0	100	92	3	331	25	18	27	29	1.98
46204744--46204867	57	2.2	57	82	4	151	30	19	19	30	1.96
46207359--46207571	46	4.6	46	83	8	202	26	19	30	23	1.98
46207409--46207628	46	4.7	48	80	14	214	26	19	31	22	1.98
46207359--46207628	92	2.9	93	81	8	264	27	19	30	22	1.98
46213623--46213664	18	2.4	17	84	11	50	19	11	2	66	1.34
46213632--46213670	18	2.2	18	85	0	51	20	10	2	66	1.33
46213785--46213827	10	4.2	10	82	14	52	67	0	0	32	0.91
46213782--46213862	28	2.9	26	74	17	74	64	0	0	35	0.94
46213783--46213865	27	3.0	27	75	16	82	63	0	0	36	0.94
46213827--46213867	10	4.2	10	78	15	50	63	0	0	36	0.95
46222978--46223188	38	5.5	38	85	4	192	21	21	25	31	1.98
46222998--46223177	76	2.3	76	84	1	225	22	21	24	31	1.99
46225053--46225116	5	13.0	5	75	11	53	39	3	1	56	1.25
46242072--46242139	32	2.1	32	94	0	118	33	4	25	36	1.76
46243791--46243909	46	2.6	44	85	7	150	30	18	27	23	1.98
46243974--46244145	49	3.5	49	77	3	152	27	19	28	24	1.98
46246534--46246572	18	2.2	18	90	9	62	12	30	23	33	1.92
46248070--46248238	45	3.8	44	76	8	135	34	28	14	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46255109--46255135	13	2.1	13	100	0	54	14	37	33	14	1.88
46257056--46257106	16	3.2	16	75	5	50	68	5	0	25	1.12
46257442--46257482	18	2.3	18	95	0	73	29	26	26	17	1.97
46259731--46259768	19	2.0	20	85	15	53	39	23	0	36	1.55
46259995--46260116	46	2.7	46	92	0	190	30	27	20	21	1.98
46259993--46260135	46	3.1	45	83	6	128	30	27	20	21	1.98
46267417--46267541	46	2.7	46	87	8	184	30	26	21	21	1.98
46272586--46272813	40	5.7	40	90	3	334	26	27	21	25	1.99
46285414--46285478	28	2.3	28	94	0	112	33	27	7	30	1.85
46285584--46285674	28	3.2	28	89	4	130	21	24	21	31	1.98
46286137--46286175	19	2.1	19	90	0	60	12	7	10	69	1.37
46287243--46287324	41	2.0	41	85	2	112	28	12	29	30	1.93
46289860--46289980	39	3.1	39	95	0	206	23	29	24	22	1.99
46301485--46301638	43	3.6	41	75	8	121	34	22	18	24	1.96
46304990--46305057	24	2.8	25	84	4	77	20	16	23	39	1.91
46306718--46306796	27	2.9	27	86	1	104	39	21	16	22	1.92
46308964--46309061	27	3.5	29	85	12	134	46	15	14	23	1.82
46308964--46309075	54	2.0	56	88	6	167	44	16	13	25	1.84
46308977--46309075	27	3.7	27	90	0	144	44	15	12	28	1.82
46317597--46317864	47	5.8	45	71	15	181	26	21	28	23	1.99
46321236--46321806	284	2.0	284	98	0	1106	31	22	8	36	1.85
46323142--46323190	23	2.1	23	100	0	98	20	4	36	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46333847--46334018	43	4.0	42	79	13	179	25	19	25	29	1.98
46333874--46334014	41	3.3	41	81	12	151	24	18	26	29	1.98
46336880--46337008	45	2.8	46	90	2	206	30	30	20	18	1.97
46344271--46344321	26	2.0	26	88	0	75	35	19	15	29	1.93
46344341--46344441	30	3.2	30	63	26	73	23	16	16	42	1.88
46344324--46344451	65	2.0	65	98	0	247	25	15	17	42	1.88
46345810--46345881	34	2.1	35	82	7	85	40	11	27	20	1.87
46348485--46348612	65	2.0	65	96	0	238	25	16	17	40	1.90
46348864--46348927	32	2.0	33	84	9	87	25	15	25	34	1.95
46350912--46351083	92	1.9	92	85	2	238	32	29	17	20	1.95
46350905--46351079	46	3.8	47	73	11	146	33	29	17	20	1.95
46353747--46353784	19	2.0	20	85	15	53	39	23	0	36	1.55
46354004--46354128	46	2.8	45	87	4	182	29	28	20	21	1.98
46361268--46361305	19	2.0	20	85	15	53	39	23	0	36	1.55
46361533--46361654	46	2.7	46	92	0	190	30	27	20	21	1.98
46361531--46361673	46	3.1	45	83	6	128	30	27	20	21	1.98
46369590--46369688	46	2.2	45	85	7	130	35	15	23	26	1.94
46374114--46374233	46	2.6	47	84	7	140	28	20	25	25	1.99
46375358--46375424	28	2.4	28	95	5	118	19	19	43	17	1.89
46380209--46380241	13	2.6	13	90	4	50	39	0	12	48	1.40
46387508--46387586	12	6.3	13	72	16	60	36	3	1	58	1.24
46387518--46387591	3	24.7	3	70	10	53	36	2	1	59	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46387867--46387900	15	2.3	15	94	0	59	35	0	8	55	1.31
46388019--46388072	27	2.0	26	86	13	74	46	1	0	51	1.11
46389006--46389070	23	3.0	22	71	15	62	21	18	23	36	1.95
46390095--46390177	43	1.9	43	95	0	148	37	24	6	32	1.80
46391435--46391491	30	1.9	30	85	0	78	40	10	22	26	1.86
46392263--46392546	50	5.6	50	80	4	259	24	15	26	33	1.95
46392414--46392495	25	3.2	26	64	19	64	25	13	26	34	1.93
46392303--46392546	101	2.4	99	82	4	276	24	15	26	33	1.96
46392303--46392585	151	1.9	151	83	1	370	25	15	27	32	1.96
46393617--46393717	42	2.4	44	81	6	118	33	21	15	28	1.95
46393591--46393752	43	3.8	42	75	8	130	32	23	16	27	1.96
46396553--46396918	46	7.7	49	76	10	313	25	19	30	24	1.98
46408295--46408362	29	2.3	29	85	5	93	27	30	13	27	1.94
46408464--46408542	29	2.7	30	78	13	101	29	29	15	26	1.96
46415712--46415799	21	4.0	23	79	10	78	17	20	26	36	1.94
46415725--46415798	21	3.5	21	83	5	87	13	20	28	37	1.90
46416189--46416243	28	2.0	28	100	0	110	36	9	3	50	1.51
46418905--46419006	29	3.6	29	82	1	116	25	15	30	28	1.96
46422640--46422875	43	5.5	43	89	0	373	26	21	27	25	1.99
46423922--46424036	29	4.0	28	85	2	140	26	13	30	29	1.94
46423930--46424045	57	2.0	57	85	3	153	25	14	31	28	1.95
46425944--46426132	50	3.8	49	83	3	236	31	26	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46433370--46433558	50	3.8	49	85	3	245	30	27	16	24	1.97
46435690--46435767	40	2.0	40	100	0	156	28	17	25	28	1.98
46437899--46438048	61	2.5	60	75	6	140	42	12	4	41	1.63
46441976--46442014	5	8.0	5	91	2	62	41	20	0	38	1.53
46446177--46446224	23	2.1	23	100	0	96	37	20	16	25	1.93
46448225--46448299	39	1.9	39	100	0	150	26	17	22	33	1.96
46451199--46451257	13	4.5	13	72	18	50	44	0	3	52	1.17
46452092--46452117	13	2.0	13	100	0	52	23	15	7	53	1.67
46457732--46457802	35	2.0	35	97	0	133	21	28	22	28	1.99
46466700--46466770	24	3.0	24	77	4	81	16	25	19	38	1.93
46469233--46469721	48	10.1	48	92	3	811	35	6	26	31	1.82
46469233--46469721	146	3.4	146	95	1	867	35	6	26	31	1.82
46469225--46469721	194	2.6	196	91	5	823	35	6	26	31	1.82
46469857--46469971	37	3.1	37	91	2	169	26	17	29	26	1.97
46469871--46469976	37	2.9	37	94	0	176	24	17	31	26	1.97
46473480--46473597	43	2.8	43	79	3	132	32	23	15	28	1.95
46474643--46474668	13	2.0	13	100	0	52	53	15	0	30	1.42
46478759--46478963	44	4.5	45	74	13	136	23	30	19	26	1.98
46498218--46498327	38	2.8	39	94	2	195	28	20	25	26	1.99
46498218--46498348	39	3.4	39	90	4	194	30	19	25	25	1.98
46498341--46498556	39	5.5	39	89	1	324	21	23	26	28	1.99
46502862--46502913	24	2.3	22	83	6	59	26	28	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46510329--46510401	22	3.2	22	88	7	94	23	31	19	26	1.98
46512258--46512340	43	2.0	42	83	7	105	30	10	25	33	1.90
46513424--46513485	27	2.3	27	91	0	97	19	20	41	17	1.90
46514748--46514801	24	2.2	24	77	6	56	40	20	20	18	1.91
46516254--46516481	27	8.3	28	82	6	218	23	22	10	42	1.84
46516254--46516481	111	2.1	109	82	3	269	23	22	10	42	1.84
46520832--46520927	28	3.4	28	95	0	165	25	36	15	22	1.94
46530247--46530287	20	2.0	20	86	9	57	41	17	2	39	1.62
46530235--46530287	20	2.7	19	81	16	56	37	18	1	41	1.62
46539277--46539340	32	2.0	32	87	0	92	37	17	23	21	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332