genome.fa.s13.2.7.7.80.10.50.1000.327.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  327  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107273129--107273222	37	2.5	38	83	10	104	17	8	2	72	1.19
107273127--107273191	20	3.4	20	72	23	59	16	10	1	70	1.23
107273177--107273252	17	4.3	16	75	17	62	17	2	3	76	1.06
107273215--107273257	13	3.2	13	86	3	50	18	0	4	76	0.95
107273211--107273244	9	3.8	9	85	14	52	17	0	2	79	0.86
107273296--107273374	14	5.3	14	72	19	52	43	0	1	55	1.07
107273310--107273353	22	2.2	20	88	12	63	40	0	2	56	1.11
107273336--107273371	15	2.5	15	95	4	65	41	0	0	58	0.98
107273274--107273392	36	3.3	36	78	14	113	41	0	0	57	1.04
107273350--107273451	22	4.5	21	68	19	71	44	0	1	53	1.11
107273348--107273400	23	2.4	21	81	9	70	49	0	0	50	1.00
107273399--107273483	31	2.8	31	79	15	88	35	0	4	60	1.18
107273634--107273671	20	1.9	20	88	0	58	52	0	0	47	1.00
107273752--107273785	9	3.8	9	85	14	52	79	2	0	17	0.86
107273739--107273781	13	3.2	13	86	3	50	76	4	0	18	0.95
107273737--107273781	23	2.0	23	86	4	65	75	4	0	20	0.97
107274705--107274795	19	4.9	19	88	8	143	35	16	12	36	1.86
107274705--107274795	35	2.5	37	87	8	132	35	16	12	36	1.86
107274717--107274774	17	3.6	15	82	14	64	34	15	12	37	1.85
107275140--107275729	44	13.4	44	81	5	620	28	27	14	29	1.95
107275697--107275954	91	2.8	92	84	1	329	29	21	15	33	1.94
107275961--107276658	84	8.3	84	90	3	1104	24	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107277604--107277649	8	5.6	8	80	14	58	2	13	0	84	0.71
107277604--107277662	10	5.5	10	82	13	73	1	13	0	84	0.69
107277604--107277660	23	2.6	21	84	10	78	1	14	0	84	0.71
107277605--107277662	25	2.4	24	81	13	66	1	13	0	84	0.70
107285643--107285733	35	2.5	37	89	8	141	36	16	10	36	1.84
107285657--107285712	17	3.5	15	88	9	60	35	16	10	37	1.83
107285643--107285733	19	4.9	19	89	8	152	36	16	10	36	1.84
107285918--107285977	18	3.3	18	79	9	68	76	3	8	11	1.12
107287125--107287167	20	2.0	22	86	8	63	51	0	18	30	1.47
107287944--107288010	29	2.3	29	97	0	125	34	11	31	22	1.90
107288003--107288176	33	5.3	33	81	1	163	35	10	20	33	1.87
107288003--107288183	65	2.8	66	77	2	204	35	11	20	33	1.88
107288019--107288139	32	3.7	33	83	2	147	32	13	19	35	1.90
107289591--107289864	46	6.0	46	93	0	433	39	13	23	24	1.90
107292867--107292922	24	2.4	24	82	8	71	58	1	28	10	1.41
107292988--107293044	17	3.4	17	75	0	60	47	5	3	43	1.43
107292988--107293055	34	2.0	34	97	0	127	42	5	5	45	1.52
107292997--107293051	17	3.2	17	75	7	58	41	5	3	49	1.43
107294785--107294835	18	2.8	18	90	0	75	27	23	15	33	1.95
107303054--107303083	6	4.8	6	92	8	51	20	0	0	80	0.72
107316341--107316405	29	2.3	29	75	2	78	35	1	6	56	1.33
107319835--107320085	130	1.9	130	95	0	448	40	20	13	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107331998--107332031	17	2.0	17	88	0	50	2	11	0	85	0.71
107337022--107337056	18	1.9	18	88	0	52	60	2	2	34	1.26
107337024--107337067	23	1.9	22	90	9	70	61	2	2	34	1.21
107339206--107339242	20	1.9	18	89	10	56	43	0	21	35	1.53
107341021--107341125	50	2.1	50	94	1	185	32	7	20	39	1.81
107344216--107344260	24	1.9	24	90	4	74	62	4	0	33	1.15
107351304--107351328	5	5.0	5	100	0	50	20	20	20	40	1.92
107354268--107354316	21	2.3	23	86	10	68	46	6	0	46	1.27
107354345--107354407	29	2.2	29	85	5	83	49	15	9	25	1.75
107361145--107361177	17	1.9	17	93	0	57	75	3	0	21	0.93
107369844--107369919	23	3.3	23	96	0	143	31	26	21	21	1.98
107370006--107370034	8	3.6	8	100	0	58	34	27	13	24	1.93
107370139--107370177	18	2.2	17	86	13	53	46	20	0	33	1.51
107377179--107377254	23	3.3	23	96	0	143	31	26	21	21	1.98
107377341--107377369	8	3.6	8	100	0	58	34	27	13	24	1.93
107377474--107377512	18	2.2	17	86	13	53	46	20	0	33	1.51
107378586--107379223	130	4.9	130	76	5	518	28	18	18	34	1.95
107385574--107385713	39	3.6	38	87	1	199	38	23	23	14	1.91
107387673--107387731	27	2.2	27	84	0	73	20	5	16	57	1.58
107389798--107389826	2	14.5	2	100	0	58	0	48	0	51	1.00
107390173--107390206	15	2.4	14	85	9	50	32	14	14	38	1.87
107390184--107390272	44	2.0	44	97	0	169	28	14	17	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107390773--107390832	30	2.0	30	93	0	102	28	1	11	58	1.43
107394839--107394955	59	2.0	59	94	0	207	34	30	17	17	1.93
107403669--107403701	17	2.0	16	94	5	57	12	3	0	84	0.72
107403669--107403701	8	4.0	8	92	7	57	12	3	0	84	0.72
107403796--107403855	23	2.7	23	82	10	63	41	0	1	56	1.09
107403769--107403857	21	4.0	23	70	21	64	41	1	2	55	1.20
107404129--107404175	18	2.8	18	75	15	55	59	0	0	40	0.97
107404348--107404413	27	2.5	26	80	5	69	53	3	1	42	1.25
107404542--107404585	21	2.1	21	84	16	56	36	2	0	61	1.09
107404687--107404724	18	2.2	17	90	4	58	65	0	0	34	0.93
107407727--107407849	30	4.1	30	89	0	174	24	21	26	27	1.99
107411616--107411690	31	2.2	34	84	13	102	45	1	0	53	1.08
107411659--107411746	19	4.6	19	76	10	65	44	1	2	52	1.21
107411646--107411758	29	3.9	28	76	5	109	42	1	1	53	1.21
107411660--107411748	10	9.4	9	74	13	63	43	1	2	52	1.20
107412415--107412539	37	3.5	36	74	9	105	55	2	1	40	1.23
107412506--107412596	23	4.1	22	72	14	62	53	2	0	43	1.12
107412584--107412640	18	3.1	18	82	5	69	70	1	1	26	1.07
107412638--107412715	18	4.1	18	69	16	59	74	2	11	11	1.17
107412674--107412706	9	3.8	9	92	8	59	81	0	9	9	0.87
107412675--107412705	8	3.8	8	91	8	53	80	0	9	9	0.90
107421789--107421832	4	11.0	4	95	0	79	22	0	25	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107422330--107422404	31	2.4	31	77	0	87	28	14	14	42	1.85
107431624--107431719	44	2.2	44	86	0	129	38	12	8	40	1.73
107432480--107432523	20	2.2	20	100	0	88	34	11	15	38	1.84
107435396--107435439	20	2.1	20	83	8	52	38	20	0	40	1.53
107437069--107437101	11	3.1	11	86	8	50	63	0	27	9	1.24
107438819--107439092	46	6.0	46	89	0	352	41	14	23	20	1.90
107438815--107439087	92	3.0	92	89	0	393	41	14	23	20	1.89
107441319--107441344	6	4.3	6	100	0	52	84	0	0	15	0.62
107442355--107442395	14	2.7	16	85	7	59	14	7	14	63	1.50
107442620--107442735	30	3.9	30	78	7	121	43	2	22	31	1.67
107442600--107442735	60	2.3	59	82	7	152	41	2	22	32	1.69
107442732--107442777	24	1.9	24	95	0	83	26	0	2	71	0.97
107442965--107443247	78	3.7	76	77	7	290	36	18	15	29	1.92
107443157--107443564	87	4.7	87	84	6	540	37	20	15	26	1.92
107443156--107443566	172	2.4	174	86	4	566	37	20	15	26	1.92
107443490--107443519	14	2.1	14	93	0	51	66	3	6	23	1.30
107443085--107443575	259	1.9	255	86	4	700	36	19	15	28	1.92
107443009--107443647	259	2.6	252	81	9	632	35	20	15	28	1.93
107451945--107451976	4	8.0	4	100	0	64	50	0	25	25	1.50
107455317--107455355	11	3.7	10	86	10	51	43	0	2	53	1.14
107458183--107458241	2	29.5	2	96	0	109	1	0	47	50	1.11
107471394--107471434	21	2.0	21	90	0	64	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107477251--107477289	11	3.7	10	86	10	51	43	0	2	53	1.14
107477248--107477296	21	2.3	21	79	6	55	42	0	2	55	1.11
107480097--107480440	170	2.0	166	96	3	609	52	6	12	27	1.64
107480436--107480474	20	2.0	20	84	0	51	69	0	5	25	1.09
107480697--107480798	18	5.7	18	68	16	52	64	4	2	27	1.28
107481581--107481651	34	2.1	34	100	0	142	14	16	14	54	1.70
107483644--107483675	15	2.1	15	100	0	64	37	34	12	15	1.85
107494454--107494481	13	2.2	13	100	0	56	0	21	0	78	0.75
107495352--107495407	19	2.9	19	86	2	67	25	3	1	69	1.14
107497727--107497762	6	5.8	6	96	3	63	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332