genome.fa.s13.2.7.7.80.10.50.1000.294.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  294  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97829578--97829634	25	2.3	25	100	0	114	40	3	24	31	1.72
97832941--97833000	10	6.0	10	81	11	70	23	8	1	66	1.28
97833723--97833756	17	1.9	18	94	5	61	26	8	5	58	1.51
97833914--97833946	12	2.8	12	95	0	57	24	9	3	63	1.38
97834478--97834774	150	2.0	150	94	0	522	28	15	17	38	1.91
97836890--97836940	4	12.8	4	77	22	54	23	1	0	74	0.92
97836890--97836936	12	3.8	13	84	15	64	23	2	0	74	0.93
97849009--97849089	12	6.9	12	71	13	53	62	2	3	30	1.25
97849001--97849089	30	3.0	30	77	8	83	61	3	4	30	1.32
97850783--97851156	206	1.8	206	89	0	595	30	22	16	30	1.96
97863204--97863234	12	2.5	12	94	5	53	64	0	3	32	1.09
97864399--97864445	17	2.8	17	84	9	53	36	0	0	63	0.94
97869380--97869466	3	30.7	3	68	15	51	60	1	5	32	1.27
97869380--97869431	11	4.6	11	75	20	54	59	0	5	34	1.21
97869390--97869466	22	3.6	22	69	22	65	61	1	5	32	1.26
97870831--97871255	44	9.4	44	74	6	251	32	20	15	32	1.94
97870830--97871259	89	4.8	89	76	6	353	31	20	15	32	1.94
97870956--97871209	140	1.8	140	82	3	332	31	20	15	32	1.94
97883137--97883244	33	3.2	34	75	9	103	59	1	6	32	1.34
97884367--97884405	16	2.5	16	91	4	62	5	0	28	66	1.12
97884997--97885058	32	1.9	32	90	3	97	20	40	20	17	1.92
97886319--97886376	23	2.5	23	88	0	89	32	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97886277--97886424	74	1.9	78	85	6	205	33	3	17	45	1.65
97896582--97896623	6	6.8	6	89	5	57	76	4	2	16	1.07
97904863--97904938	23	3.5	22	75	19	63	67	5	6	21	1.34
97904863--97904914	23	2.3	23	84	15	65	67	3	7	21	1.32
97914142--97914174	13	2.5	13	100	0	66	6	36	42	15	1.71
97919038--97919083	23	2.1	21	84	8	56	76	2	2	19	1.00
97922422--97922461	14	2.8	14	80	3	53	37	10	12	40	1.77
97929327--97929417	34	2.7	34	87	0	128	38	29	4	27	1.76
97929327--97929430	34	3.2	33	82	8	97	38	27	5	27	1.80
97930124--97930182	24	2.4	25	85	5	84	40	13	40	5	1.67
97930473--97930523	25	2.0	25	88	7	75	66	0	0	33	0.92
97932777--97932832	20	2.8	20	81	5	60	19	35	14	30	1.91
97935704--97935823	42	2.8	43	76	11	129	28	25	18	27	1.98
97938640--97938687	15	3.1	15	78	6	51	54	4	0	41	1.20
97944293--97944385	19	4.4	21	68	25	54	60	4	3	32	1.32
97944445--97944538	27	3.6	26	80	5	91	54	5	8	31	1.53
97944701--97944844	23	6.3	23	67	16	86	53	4	6	35	1.48
97944827--97944853	14	1.9	14	100	0	54	51	0	11	37	1.37
97945023--97945152	3	42.7	3	71	7	75	61	3	4	30	1.34
97946984--97947047	33	1.9	33	83	3	83	67	0	9	23	1.20
97948808--97949012	85	2.4	85	92	2	333	21	25	23	29	1.99
97949015--97950101	133	8.1	133	88	0	1519	27	22	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97957911--97957963	24	2.2	24	100	0	106	11	30	24	33	1.90
97957919--97957973	24	2.3	24	87	0	74	18	30	21	29	1.97
97976656--97976710	28	2.0	27	82	7	65	21	23	23	30	1.99
97977193--97977226	18	1.9	18	88	5	52	14	44	29	11	1.81
97983094--97983148	24	2.2	26	81	12	71	45	0	1	52	1.11
97983286--97983380	45	2.1	45	88	1	138	32	27	5	34	1.79
97983361--97983428	16	4.2	16	96	0	118	35	36	0	27	1.58
97993465--97993491	14	1.9	14	100	0	54	66	11	0	22	1.22
97994615--97994677	22	2.9	21	79	9	72	53	4	6	34	1.47
97994757--97994798	23	1.9	22	85	9	59	57	7	2	33	1.39
97994836--97994864	3	9.7	3	100	0	58	68	0	0	31	0.89
97994925--97994983	18	3.2	18	71	17	50	61	0	6	32	1.22
97998992--97999040	23	2.1	23	100	0	98	30	8	12	48	1.69
97999243--97999292	25	2.0	25	100	0	100	52	20	4	24	1.63
97999601--97999660	28	2.1	28	81	6	68	38	11	8	41	1.72
97999880--97999920	16	2.5	16	84	4	55	24	0	0	75	0.80
98000175--98000371	64	3.1	64	83	4	263	45	7	19	27	1.76
98001226--98001266	21	1.9	22	85	5	57	43	31	2	21	1.66
98001265--98001308	14	3.2	13	81	9	52	27	6	25	40	1.80
98011576--98011628	13	4.1	13	92	0	88	15	33	32	18	1.92
98019681--98019765	44	1.9	44	92	0	143	45	14	24	15	1.83
98019681--98019802	44	2.8	43	83	10	133	45	13	24	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98020592--98020946	70	4.9	74	82	8	410	29	16	20	33	1.95
98020592--98020946	145	2.5	142	82	6	428	29	16	20	33	1.95
98020880--98021117	87	2.7	92	82	9	280	28	16	19	35	1.94
98022979--98023434	46	10.0	46	91	2	713	21	23	14	39	1.91
98022979--98023434	183	2.5	183	92	2	738	21	23	14	39	1.91
98022979--98023434	137	3.3	137	92	1	736	21	23	14	39	1.91
98025579--98025619	11	3.7	11	86	0	55	73	0	2	24	0.96
98025591--98025666	20	3.7	21	77	10	68	59	6	1	32	1.32
98026178--98026204	12	2.2	12	100	0	54	77	7	7	7	1.12
98027355--98027438	3	28.0	3	97	0	159	0	32	0	67	0.91
98027474--98027514	21	2.0	21	85	0	55	36	2	7	53	1.42
98027598--98027656	23	2.8	21	77	10	66	35	6	5	52	1.50
98027598--98027658	20	2.9	21	78	9	70	34	6	4	54	1.48
98027927--98027997	21	3.4	21	66	14	65	29	9	8	52	1.64
98027921--98028004	42	2.0	42	100	0	168	28	14	9	47	1.75
98030442--98030477	18	1.9	19	94	5	65	41	0	5	52	1.24
98030494--98030536	20	2.3	18	80	8	50	37	2	0	60	1.10
98030491--98030542	19	2.7	19	76	8	52	40	1	0	57	1.10
98031107--98031277	87	2.0	85	83	4	218	37	15	8	38	1.79
98031297--98031355	19	3.1	19	75	4	57	55	0	3	40	1.16
98031287--98031377	38	2.5	35	75	8	92	57	1	3	38	1.23
98031691--98031768	8	8.8	8	77	18	57	35	5	0	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98031693--98031799	10	11.3	10	74	11	66	30	3	0	64	1.17
98031692--98031745	27	2.0	28	85	3	74	33	3	0	62	1.12
98031696--98031746	17	2.7	19	77	20	54	35	3	0	60	1.15
98031684--98031800	56	2.1	57	82	4	139	33	3	0	62	1.18
98035091--98035362	137	2.0	133	89	2	400	32	14	14	38	1.86
98037182--98037269	17	5.4	17	70	19	62	14	20	30	34	1.93
98045240--98045272	15	2.2	16	89	10	52	57	6	18	18	1.60
98046163--98046212	8	6.1	8	80	11	57	58	0	2	40	1.10
98057618--98057695	39	2.0	40	80	14	90	62	3	3	29	1.30
98074769--98074804	17	2.1	18	89	5	56	63	0	5	30	1.17
98074689--98074828	73	1.9	74	91	5	228	58	7	5	27	1.49
98077163--98077194	16	2.1	16	94	5	57	56	6	0	37	1.25
98077181--98077471	99	2.9	102	84	8	355	53	16	1	29	1.51
98077675--98077783	33	3.5	33	70	24	108	53	10	0	36	1.35
98077667--98077785	60	2.0	60	94	0	211	54	10	0	34	1.36
98079073--98079117	14	3.2	14	81	12	65	24	0	26	48	1.51
98079078--98079124	14	3.4	14	74	11	51	23	0	29	46	1.52
98079202--98079249	21	2.3	21	78	7	53	22	2	39	35	1.66
98080696--98080730	18	1.9	18	88	0	52	60	2	11	25	1.45
98080696--98080743	18	2.7	17	83	6	51	62	2	8	27	1.35
98080930--98080981	26	2.0	26	84	0	68	57	3	9	28	1.48
98081282--98081386	11	9.5	11	73	15	74	60	0	2	35	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98081242--98081414	20	7.7	23	71	19	109	58	3	3	34	1.32
98081242--98081388	45	3.3	45	81	15	157	59	2	3	35	1.26
98081279--98081388	9	12.7	9	69	20	65	60	0	2	35	1.17
98081447--98081492	23	2.0	23	83	8	58	56	4	2	36	1.31
98083786--98083837	26	2.0	26	92	0	86	34	3	30	30	1.76
98085437--98085751	166	1.9	166	95	0	569	31	11	6	50	1.65
98085779--98085859	34	2.4	34	93	0	135	50	14	1	33	1.51
98085929--98085965	9	4.1	9	96	0	65	40	24	0	35	1.55
98087785--98087817	15	2.2	15	100	0	66	27	12	27	33	1.92
98090918--98091031	26	4.3	26	83	5	120	19	22	22	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332