genome.fa.s13.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  144  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47305446--47305475	11	2.7	11	89	0	51	73	3	0	23	0.98
47305987--47306012	13	2.0	13	100	0	52	46	23	0	30	1.53
47306322--47306378	27	2.1	27	87	6	80	21	24	31	22	1.98
47306543--47306590	22	2.0	25	84	11	66	22	0	4	72	1.01
47307494--47307538	22	2.0	22	100	0	90	40	8	28	22	1.84
47308376--47308447	24	3.0	24	71	4	74	23	18	16	41	1.89
47308374--47308437	23	2.7	24	73	2	67	23	18	18	39	1.93
47308374--47308487	47	2.4	47	81	5	124	25	20	14	39	1.91
47308623--47308666	20	2.1	20	87	8	61	36	2	15	45	1.59
47310013--47310040	14	2.0	14	100	0	56	28	14	21	35	1.92
47324009--47324184	46	3.8	46	78	12	198	20	21	29	28	1.98
47324006--47324177	93	1.8	93	93	0	299	20	21	29	27	1.98
47326070--47326097	10	2.8	10	100	0	56	17	10	0	71	1.14
47327986--47328028	20	2.2	20	100	0	86	55	20	23	0	1.43
47328507--47328533	14	1.9	14	100	0	54	22	7	11	59	1.56
47329370--47329415	23	2.0	23	95	0	83	19	8	19	52	1.72
47329484--47329948	226	2.1	226	95	0	835	33	9	21	35	1.86
47333855--47333938	38	2.2	39	89	4	127	2	34	4	58	1.32
47336991--47337028	19	2.0	19	94	0	67	34	10	23	31	1.89
47337917--47337956	19	2.0	20	86	13	57	77	2	5	15	1.04
47338196--47338240	8	5.5	8	82	15	56	8	6	0	84	0.78
47338531--47338983	44	10.4	44	87	2	646	23	31	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47338555--47338997	216	2.1	216	89	0	672	22	30	16	29	1.96
47338967--47339168	88	2.3	88	93	0	341	30	25	17	26	1.97
47339278--47339400	61	2.0	64	88	7	191	38	12	16	33	1.85
47351293--47351330	19	2.0	19	94	0	67	34	10	23	31	1.89
47352214--47352253	19	2.0	20	86	13	57	77	2	5	15	1.04
47352494--47352534	9	4.6	9	84	0	55	4	9	0	85	0.73
47352493--47352534	18	2.4	17	92	4	66	7	9	0	83	0.81
47352646--47352723	41	1.9	41	94	0	138	37	17	6	38	1.76
47354251--47354275	11	2.3	11	100	0	50	32	0	0	68	0.90
47354383--47354420	9	4.2	9	93	6	60	55	0	0	44	0.99
47354361--47354420	17	3.4	18	80	17	63	46	1	1	50	1.21
47354376--47354420	9	5.4	8	87	12	56	53	0	0	46	1.00
47354443--47354478	17	2.2	17	90	5	56	41	2	0	55	1.14
47354569--47354718	70	2.1	71	88	1	230	42	2	4	50	1.37
47354624--47354752	17	7.3	17	66	17	57	41	1	3	53	1.29
47354694--47354745	26	2.0	26	85	7	70	38	0	3	57	1.17
47354696--47354751	26	2.2	26	80	6	60	39	0	3	57	1.16
47354803--47354841	19	2.0	20	85	5	53	38	5	0	56	1.22
47355549--47355614	28	2.3	29	79	10	73	34	3	4	57	1.34
47355586--47355631	21	2.3	19	88	7	65	39	2	2	56	1.24
47355540--47355711	9	18.4	9	66	18	68	33	2	4	59	1.29
47357401--47357449	25	2.0	24	92	4	80	57	2	0	40	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47359249--47359298	22	2.3	22	93	3	84	56	6	18	20	1.62
47365645--47365734	29	3.1	28	84	7	110	30	25	15	28	1.96
47365678--47365746	29	2.4	29	90	4	104	28	23	17	30	1.97
47371690--47371767	33	2.5	31	78	15	79	20	24	19	35	1.95
47378235--47378304	27	2.6	27	90	4	106	32	7	12	47	1.69
47386365--47386414	26	1.9	26	95	0	91	26	22	28	24	1.99
47386364--47386423	26	2.6	22	76	20	68	26	25	26	21	2.00
47387600--47387761	42	3.8	42	82	1	189	33	15	24	27	1.95
47390432--47390473	21	2.0	21	95	0	75	19	16	23	40	1.91
47390917--47390979	30	2.1	31	88	8	94	46	0	6	47	1.28
47393346--47393371	9	2.9	9	100	0	52	92	0	7	0	0.39
47396072--47396135	23	2.7	23	82	2	83	26	3	9	60	1.42
47399047--47399137	43	2.2	41	92	4	146	24	12	26	37	1.90
47401499--47401624	46	2.7	46	96	0	225	29	27	22	20	1.98
47401501--47401643	46	3.1	45	88	4	146	28	28	21	20	1.98
47402047--47402106	30	2.0	30	90	0	93	30	25	8	36	1.85
47408112--47408284	46	3.7	46	77	13	201	21	20	28	30	1.98
47408109--47408279	93	1.8	93	93	0	297	21	20	29	29	1.98
47410492--47410663	46	3.7	46	77	13	190	29	28	20	21	1.98
47410497--47410667	93	1.8	93	92	0	288	28	29	21	21	1.98
47411087--47411146	30	2.0	30	90	0	93	30	25	8	36	1.85
47414597--47414760	42	3.9	42	84	1	211	32	16	24	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47419804--47419887	43	2.0	43	90	0	132	26	33	20	20	1.97
47426183--47426346	43	3.8	43	75	6	145	34	25	17	22	1.95
47426177--47426339	86	1.9	85	85	6	222	34	26	17	21	1.95
47429087--47429318	18	12.5	18	70	11	137	38	15	11	34	1.83
47429179--47429370	54	3.6	54	74	6	165	38	15	12	33	1.85
47429181--47429383	72	2.8	71	79	10	216	37	15	12	34	1.85
47429179--47429382	18	11.3	18	73	9	130	37	15	12	34	1.85
47429601--47429627	6	4.5	6	100	0	54	48	14	18	18	1.82
47431911--47431951	21	2.0	21	85	9	57	53	4	0	41	1.22
47433959--47434083	62	2.0	62	100	0	250	36	20	17	24	1.94
47434100--47434199	44	2.3	44	92	0	164	31	24	22	23	1.99
47444101--47444141	20	2.0	20	90	0	64	34	9	7	48	1.64
47444489--47444545	28	2.0	28	100	0	114	40	14	3	42	1.62
47447914--47447958	22	2.0	22	95	0	81	24	24	22	28	1.99
47453686--47453834	67	2.2	67	81	9	171	32	17	28	21	1.96
47453710--47453892	63	2.8	63	77	11	183	30	17	29	22	1.97
47456757--47456837	41	2.0	41	100	0	162	38	22	14	24	1.92
47459555--47459984	54	8.4	54	73	12	268	23	23	18	34	1.96
47459714--47459893	47	3.8	47	74	9	134	22	23	18	35	1.96
47459996--47460079	44	1.9	44	85	4	116	26	25	9	39	1.86
47461864--47461996	65	2.0	65	98	0	257	33	9	23	34	1.86
47462461--47462540	38	2.1	38	88	0	115	20	21	28	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47462512--47462644	43	3.1	43	87	6	182	12	24	32	30	1.92
47462974--47463081	45	2.4	45	83	6	123	25	22	25	26	2.00
47465174--47465377	46	4.2	46	75	13	153	26	16	28	27	1.97
47472146--47472371	40	5.7	40	91	4	323	26	27	21	24	1.99
47480130--47480353	40	5.7	40	88	5	296	26	27	20	24	1.99
47480130--47480351	118	1.9	120	85	7	310	26	27	20	24	1.99
47480130--47480353	78	2.8	79	86	5	283	26	27	20	24	1.99
47482031--47482110	38	2.1	38	88	0	115	20	21	28	30	1.98
47482082--47482299	43	5.1	43	90	1	323	12	23	33	30	1.91
47482630--47482736	44	2.5	42	83	10	119	22	23	27	27	1.99
47486295--47486361	33	2.0	33	100	0	134	53	14	5	25	1.64
47495222--47495277	24	2.3	24	93	0	94	5	8	51	33	1.56
47495234--47495282	24	2.2	22	82	10	55	8	8	51	32	1.61
47503945--47504130	91	2.0	91	91	0	300	28	9	19	42	1.82
47508831--47508990	73	2.3	67	86	6	203	19	28	21	30	1.98
47516388--47516421	10	3.2	10	88	12	50	26	2	2	67	1.19
47527507--47527564	31	1.9	30	86	10	82	41	1	37	18	1.61
47527506--47527571	29	2.2	32	81	8	84	45	1	36	16	1.57
47527613--47527649	9	4.1	9	89	0	56	29	13	10	45	1.77
47527700--47527734	18	1.9	18	94	0	61	37	25	11	25	1.90
47536712--47537118	96	4.3	93	81	9	260	28	18	28	24	1.98
47536712--47537122	47	8.6	51	71	16	240	28	18	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47536853--47537075	96	2.3	96	94	1	392	29	17	27	24	1.98
47544448--47544758	47	6.6	45	72	13	182	27	17	28	26	1.97
47544447--47544860	96	4.3	96	82	7	370	28	17	28	26	1.98
47550106--47550201	27	3.5	27	79	1	93	23	26	13	36	1.92
47554546--47554599	18	3.0	18	83	8	74	9	37	11	42	1.73
47557809--47557851	17	2.5	17	88	7	61	76	0	16	6	0.99
47559997--47560364	46	8.0	46	94	0	583	40	14	23	21	1.90
47559997--47560412	92	4.5	92	89	1	573	40	14	23	21	1.90
47559997--47560364	138	2.7	138	94	0	646	40	14	23	21	1.90
47564704--47564854	40	3.7	41	84	7	200	26	17	25	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332