genome.fa.s13.2.7.7.80.10.50.1000.328.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  328  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107500519--107500562	19	2.4	19	84	3	54	31	6	0	61	1.22
107500856--107500894	18	2.2	18	86	4	53	35	5	5	53	1.45
107500918--107500987	25	2.8	26	73	16	67	55	1	1	41	1.17
107500891--107500977	38	2.3	37	78	7	95	56	1	2	40	1.19
107502377--107502435	31	1.9	31	86	6	84	23	10	13	52	1.71
107502841--107502875	16	2.3	15	95	5	61	14	25	8	51	1.70
107503262--107503344	43	2.0	42	88	7	123	56	12	4	26	1.55
107504651--107504726	37	2.1	37	97	0	143	47	13	11	27	1.77
107508628--107508739	57	2.0	57	96	3	208	34	10	19	34	1.87
107509643--107509683	20	2.0	21	90	4	66	58	0	7	34	1.26
107515371--107515453	41	2.0	41	97	0	157	54	2	25	18	1.56
107516213--107516253	21	1.9	21	85	5	55	41	0	0	58	0.98
107521622--107521718	46	2.2	45	88	3	142	39	7	11	42	1.68
107521633--107521722	46	2.0	46	97	0	171	36	6	14	42	1.72
107530479--107530851	131	2.8	130	84	5	478	33	10	14	41	1.80
107539076--107539113	18	2.1	18	100	0	76	36	21	15	26	1.93
107542562--107542594	16	2.0	17	94	5	59	48	12	6	33	1.65
107543631--107543664	13	2.7	13	90	4	52	0	14	5	79	0.91
107569142--107569434	150	1.9	151	94	2	518	32	12	12	42	1.81
107570329--107570385	13	4.2	13	78	19	55	40	0	0	59	0.97
107570848--107570882	3	11.7	3	100	0	70	31	34	0	34	1.58
107584590--107584790	109	1.8	110	88	7	311	44	18	13	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107588327--107588395	29	2.5	28	86	6	95	44	2	4	47	1.37
107588332--107588425	29	3.2	28	83	8	82	43	5	4	46	1.45
107598751--107598798	11	4.4	11	81	0	60	27	4	2	66	1.21
107598755--107598797	22	2.0	22	95	0	77	27	4	2	65	1.25
107600992--107601088	29	3.3	29	76	11	97	44	17	9	28	1.80
107602935--107603167	59	3.9	59	82	6	256	39	18	18	23	1.92
107602928--107603167	120	2.0	119	82	4	295	39	18	17	23	1.92
107610401--107610469	34	2.0	34	100	0	138	26	23	11	39	1.88
107610614--107610646	15	2.2	15	100	0	66	48	27	6	18	1.71
107611267--107611333	33	2.0	33	85	5	91	31	11	13	43	1.80
107612017--107612053	18	2.1	18	94	0	65	37	8	16	37	1.78
107615386--107615442	20	2.8	20	83	0	78	28	10	19	42	1.84
107620310--107620335	5	5.2	5	100	0	52	0	57	42	0	0.98
107620573--107620611	19	2.0	20	90	5	62	20	0	7	71	1.10
107620592--107620637	25	1.9	23	86	8	65	28	0	8	63	1.24
107623279--107623310	6	5.2	6	96	3	55	81	0	0	18	0.70
107625836--107625882	10	4.6	10	77	15	51	27	0	4	68	1.08
107633223--107633271	26	1.9	25	83	4	62	30	2	4	63	1.24
107638158--107638247	45	2.0	45	86	4	128	41	2	13	43	1.56
107641260--107641342	28	2.9	29	75	10	80	46	3	6	43	1.45
107641260--107641331	29	2.5	29	80	8	76	47	2	5	44	1.41
107642724--107642756	14	2.4	14	94	0	57	69	12	0	18	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107643671--107643740	19	3.7	18	78	12	61	42	0	5	51	1.25
107643671--107643740	18	3.8	17	78	14	59	42	0	5	51	1.25
107645541--107645646	54	1.9	57	88	5	164	25	7	35	31	1.84
107646388--107646442	24	2.3	22	100	0	74	21	5	45	27	1.74
107645598--107646702	30	36.7	30	80	2	944	20	9	42	28	1.82
107646477--107646751	90	3.1	90	81	1	228	22	10	39	27	1.87
107647170--107647245	38	2.0	38	97	0	143	36	13	17	32	1.88
107652229--107653828	48	33.3	48	83	2	1598	25	4	49	20	1.67
107652254--107652338	27	3.4	27	67	18	83	22	4	49	23	1.68
107652400--107652485	27	3.4	27	68	23	87	26	2	50	20	1.61
107652541--107652662	27	5.0	26	62	21	75	22	6	50	19	1.70
107653067--107653151	27	3.4	27	65	18	74	28	4	43	23	1.74
107653646--107654002	174	2.1	174	82	1	419	26	4	48	20	1.69
107653792--107653858	30	2.2	30	81	0	71	22	4	47	25	1.70
107653693--107653952	126	2.1	126	82	1	306	26	4	48	21	1.68
107653818--107655929	144	14.5	144	82	3	1904	27	4	47	20	1.68
107653597--107654050	222	2.0	222	82	1	543	27	4	47	20	1.70
107654543--107654612	21	2.8	26	67	22	69	25	7	47	20	1.75
107654543--107654618	27	3.0	27	67	21	74	23	6	48	21	1.73
107655130--107655200	21	2.9	26	66	23	71	30	7	42	19	1.78
107655400--107655473	21	3.2	21	66	20	58	27	2	51	18	1.60
107653818--107655941	48	43.9	48	80	2	1677	26	4	47	20	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107657961--107658097	68	2.0	69	97	2	258	36	12	10	40	1.77
107660791--107660831	12	3.3	12	86	3	55	39	0	58	2	1.11
107660849--107660911	27	2.3	26	81	5	63	20	4	49	25	1.68
107660901--107660928	3	9.3	3	100	0	56	0	0	67	32	0.91
107660916--107661955	48	21.7	48	81	1	891	27	4	47	20	1.68
107660872--107660991	63	1.9	63	81	3	143	22	2	51	23	1.60
107661177--107661259	27	3.3	27	64	25	72	28	6	46	18	1.72
107663171--107663275	44	2.3	45	83	3	122	34	13	21	30	1.92
107663984--107664178	98	2.0	98	97	0	372	32	11	22	33	1.90
107667407--107668843	48	29.6	48	80	4	1311	25	4	48	21	1.68
107668248--107668279	3	10.7	3	93	0	55	3	0	68	28	1.04
107668401--107668477	21	3.4	21	70	19	73	20	2	57	19	1.53
107668419--107668504	27	3.4	26	72	18	92	22	3	52	22	1.62
107668494--107668537	3	14.7	3	80	0	52	9	0	63	27	1.24
107668303--107668681	156	2.5	156	89	2	563	22	3	50	22	1.64
107668418--107668635	108	2.0	108	89	0	328	22	3	51	22	1.62
107671741--107671791	22	2.3	22	86	6	68	39	1	0	58	1.09
107672130--107672154	4	6.2	4	100	0	50	24	0	0	76	0.80
107672616--107672882	132	2.0	132	87	2	385	26	17	20	35	1.94
107674966--107675050	42	2.0	42	95	4	154	28	14	14	43	1.83
107676549--107676582	16	2.1	16	88	0	50	88	11	0	0	0.52
107684092--107684160	30	2.3	31	77	5	79	56	1	10	31	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107685074--107685103	15	2.0	15	100	0	60	60	26	0	13	1.34
107691566--107692120	209	2.7	208	81	5	635	40	7	13	38	1.73
107693403--107693526	39	3.2	39	94	0	212	37	22	25	14	1.92
107704643--107704691	24	2.1	25	88	11	77	63	0	0	36	0.95
107704631--107704691	30	2.0	31	84	9	81	60	0	0	39	0.97
107706927--107707087	86	1.9	87	84	6	220	43	16	7	32	1.75
107709497--107709534	19	2.0	19	100	0	76	36	10	31	21	1.87
107718278--107718367	18	5.0	18	90	0	144	34	15	21	28	1.94
107720409--107720440	15	2.1	15	100	0	64	25	28	31	15	1.96
107732072--107732114	18	2.4	18	80	0	50	46	0	4	48	1.22
107734008--107734034	8	3.4	8	100	0	54	88	0	0	11	0.50
107735787--107735846	30	2.0	30	100	0	120	6	40	13	40	1.71
107737788--107737843	20	3.0	20	87	12	84	30	14	12	42	1.82
107737796--107737848	16	3.1	16	89	10	70	30	13	9	47	1.74
107738225--107738262	14	2.6	15	79	8	51	42	0	0	57	0.98
107738217--107738294	35	2.2	33	78	12	84	39	0	2	57	1.12
107740018--107740058	5	8.2	5	94	0	73	58	0	2	39	1.11
107742514--107742563	21	2.4	22	80	10	59	26	0	8	66	1.19
107781863--107781922	31	1.9	32	83	6	79	25	16	18	40	1.91
107782742--107782817	32	2.4	33	80	4	93	42	18	2	36	1.64
107787953--107788217	141	1.9	143	84	3	356	50	9	12	27	1.71
107789489--107789540	25	2.1	25	100	0	104	46	26	15	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107807048--107807103	28	2.0	28	92	0	94	41	8	21	28	1.83
107807055--107807123	28	2.6	27	84	8	81	43	4	17	34	1.69
107809045--107809220	31	5.7	31	87	4	243	28	17	27	27	1.97
107809042--107809264	31	7.4	29	79	11	138	30	15	27	26	1.96
107809269--107809485	33	6.6	33	88	1	265	35	11	19	33	1.89
107809257--107809503	98	2.5	99	82	3	286	36	12	20	31	1.89
107809269--107809528	131	2.0	130	82	5	319	36	12	20	30	1.89
107812197--107812242	25	1.9	24	82	8	58	36	4	8	50	1.53
107819874--107820025	67	2.3	66	89	2	232	34	3	10	51	1.53
107824325--107824381	29	2.0	29	82	6	71	52	0	3	43	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332