genome.fa.s13.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  110  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35402103--35402143	19	2.2	19	100	0	82	19	9	9	60	1.55
35405289--35405339	26	2.0	26	84	7	68	47	13	1	37	1.55
35424513--35424586	29	2.6	29	86	4	96	25	31	16	27	1.96
35431864--35431897	17	2.0	17	100	0	68	29	17	17	35	1.93
35435261--35435353	38	2.4	38	87	0	123	22	19	27	30	1.98
35435357--35435597	43	5.6	43	94	0	419	11	25	32	30	1.91
35503124--35503175	23	2.3	22	75	21	54	9	23	1	65	1.32
35503133--35503187	12	4.6	12	73	15	51	12	23	0	63	1.29
35503169--35503206	17	2.2	18	85	4	51	10	23	2	63	1.39
35504436--35504488	22	2.5	21	84	3	61	18	3	7	69	1.28
35515833--35515961	46	2.8	46	92	0	204	30	27	20	21	1.98
35524030--35524253	48	4.7	48	83	1	234	24	28	20	27	1.99
35524032--35524253	96	2.3	96	85	1	275	23	27	20	27	1.99
35539723--35539840	49	2.4	51	86	9	156	26	22	28	22	1.99
35543952--35544128	67	2.7	67	88	2	268	21	31	16	30	1.95
35544640--35544700	30	2.0	30	83	0	77	31	22	4	40	1.75
35548460--35548497	18	2.1	18	95	0	67	34	15	21	28	1.94
35550417--35550514	27	3.5	28	90	2	135	26	13	28	31	1.94
35550445--35550527	27	3.0	27	87	5	96	30	12	25	32	1.92
35550417--35550528	28	4.0	27	83	6	98	28	12	25	33	1.92
35558599--35558696	27	3.5	28	90	2	135	26	13	28	31	1.94
35558627--35558709	27	3.0	27	87	5	96	30	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35558599--35558710	28	4.0	27	83	6	98	28	12	25	33	1.92
35560666--35560726	30	2.0	30	87	0	86	31	22	6	39	1.80
35563993--35564210	48	4.5	48	84	1	249	22	29	21	26	1.99
35572890--35573018	54	2.4	54	84	7	156	40	20	8	30	1.83
35572869--35573035	27	6.2	28	78	7	134	40	20	8	29	1.83
35572869--35573048	81	2.2	80	79	6	186	39	22	8	28	1.84
35572941--35573053	54	2.1	54	81	6	131	38	19	10	31	1.86
35573092--35573411	27	11.9	27	85	1	401	36	17	21	24	1.94
35574067--35574138	27	2.6	28	86	4	94	18	25	20	36	1.95
35574277--35574330	25	2.2	25	89	0	81	18	22	14	44	1.86
35574310--35574347	6	6.3	6	87	0	58	15	18	13	52	1.74
35575153--35575226	27	2.8	26	83	4	94	21	24	16	37	1.93
35575343--35575401	25	2.4	25	79	0	73	22	18	11	47	1.81
35577884--35578077	50	3.9	50	84	5	232	26	18	25	29	1.98
35590274--35590455	40	4.6	40	84	6	228	25	28	21	24	1.99
35590276--35590455	79	2.3	80	83	7	224	25	28	22	24	1.99
35593439--35593595	68	2.3	68	83	3	192	26	14	17	41	1.88
35595526--35595662	46	3.0	46	85	0	193	26	30	8	34	1.87
35595636--35595924	47	6.1	47	88	3	380	27	29	10	32	1.90
35595748--35595825	23	3.2	25	66	23	76	30	32	8	28	1.88
35595679--35595800	22	5.3	22	63	24	63	26	30	11	31	1.91
35603599--35603660	24	2.6	24	82	7	72	22	17	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35610490--35610575	34	2.6	34	81	1	93	24	26	25	23	2.00
35617132--35617158	14	1.9	14	100	0	54	29	7	14	48	1.71
35632566--35632720	42	3.6	44	72	18	128	29	25	18	27	1.98
35633066--35633198	65	2.0	65	98	0	257	38	21	9	30	1.85
35639556--35639774	45	5.0	45	90	3	292	24	19	29	26	1.98
35642709--35642749	21	2.0	21	90	9	66	39	2	24	34	1.69
35644036--35644155	39	3.1	39	92	0	195	28	20	27	23	1.99
35651662--35651692	14	2.2	14	94	0	53	70	3	0	25	1.02
35656869--35656914	18	2.6	18	96	0	83	28	2	6	63	1.31
35661486--35661543	30	1.9	30	85	0	80	31	12	27	29	1.92
35664113--35664170	21	2.7	21	81	2	62	68	1	24	5	1.19
35665516--35665544	13	2.2	13	100	0	58	27	0	10	62	1.28
35668695--35668723	5	6.0	5	92	8	51	41	20	0	37	1.53
35673076--35673108	16	2.1	16	88	5	50	39	0	3	57	1.14
35676894--35676932	19	2.1	19	85	9	53	46	2	23	28	1.65
35686192--35686246	21	2.6	21	91	0	92	14	32	27	25	1.95
35690960--35690993	16	2.2	16	89	5	52	41	0	2	55	1.15
35693822--35693971	67	2.2	67	81	8	171	32	17	28	21	1.96
35693846--35694029	67	2.8	64	77	8	194	29	17	29	22	1.97
35701525--35701593	27	2.6	27	95	0	120	18	21	21	37	1.94
35701578--35701654	26	3.0	26	84	5	102	18	19	23	38	1.93
35709370--35709459	29	3.1	29	88	1	119	31	26	12	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35714030--35714132	37	2.8	37	92	0	170	24	32	20	23	1.98
35714273--35714381	48	2.3	48	96	0	200	31	28	5	34	1.80
35716988--35717077	29	3.1	27	82	7	99	30	31	11	27	1.91
35717003--35717077	29	2.6	29	89	2	107	29	30	12	28	1.92
35720037--35720132	27	3.6	27	78	5	113	43	19	7	29	1.78
35720144--35720355	27	7.9	27	85	3	257	30	22	7	40	1.80
35720103--35720230	53	2.4	53	81	3	141	34	18	7	39	1.80
35720117--35720390	80	3.4	79	78	7	230	33	20	8	37	1.82
35720390--35720537	27	5.5	27	79	7	158	41	20	7	29	1.80
35720395--35720565	54	3.1	54	75	8	150	42	19	7	30	1.79
35720493--35720600	27	3.9	27	74	13	94	42	18	6	32	1.76
35721525--35721594	25	2.8	25	86	0	95	28	24	21	25	1.99
35721814--35721928	31	3.7	31	95	3	198	28	17	25	28	1.97
35724594--35724750	43	3.7	43	75	7	158	29	25	19	25	1.99
35727845--35727979	28	4.8	28	85	0	189	33	11	25	30	1.90
35745475--35745630	43	3.7	41	76	10	136	31	25	18	24	1.98
35745475--35745630	85	1.8	85	86	8	228	31	25	18	24	1.98
35745529--35745650	43	2.8	42	74	18	108	33	24	16	25	1.96
35746844--35746895	22	2.4	21	83	6	59	44	26	1	26	1.65
35747524--35747679	42	3.7	41	77	5	150	32	26	15	25	1.95
35747521--35747692	86	2.0	84	84	2	218	34	26	14	24	1.94
35754006--35754188	79	2.3	81	84	7	232	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35754007--35754190	40	4.6	40	83	9	216	23	22	28	25	2.00
35754059--35754223	79	2.1	79	84	6	210	25	21	27	25	1.99
35755746--35755843	33	3.0	32	76	11	81	26	26	16	30	1.97
35755777--35755985	101	2.1	101	87	1	294	28	23	17	30	1.97
35774151--35774426	27	10.2	27	83	0	300	30	21	5	41	1.77
35774151--35774426	54	5.1	54	84	0	345	30	21	5	41	1.77
35774137--35774426	81	3.6	81	81	1	339	32	21	5	40	1.77
35774728--35774791	33	2.0	32	84	3	83	20	23	20	35	1.96
35774753--35774812	27	2.3	26	85	2	75	21	23	20	35	1.96
35774959--35775036	6	12.8	6	71	12	61	20	19	11	48	1.79
35780752--35780822	34	2.1	33	82	12	83	25	22	25	26	2.00
35786433--35786506	29	2.6	29	86	4	96	25	31	16	27	1.96
35789366--35789437	26	2.8	26	87	10	96	23	22	22	31	1.98
35789391--35789450	26	2.4	26	79	20	74	28	18	21	31	1.97
35789657--35789740	31	2.7	31	83	5	109	33	15	26	25	1.95
35797296--35797367	26	2.8	26	85	6	94	26	20	22	30	1.98
35797320--35797380	25	2.4	26	76	15	65	31	16	22	29	1.96
35797575--35797658	31	2.7	31	88	1	134	32	15	26	26	1.96
35807009--35807094	44	1.9	45	92	2	147	26	15	24	33	1.95
35817635--35817994	94	3.8	94	74	13	287	27	20	29	23	1.98
35817638--35817998	47	7.7	46	69	11	207	27	19	29	22	1.98
35824780--35824841	30	2.1	29	87	3	88	35	16	22	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35825182--35825544	47	7.7	46	70	15	199	28	20	28	22	1.99
35825182--35825541	94	3.8	94	76	11	287	28	20	28	22	1.99
35825185--35825541	141	2.5	140	78	10	320	28	20	28	22	1.99
35827240--35827381	67	2.1	67	82	5	167	32	22	26	19	1.97
35833675--35833955	137	2.0	138	92	0	465	44	6	9	40	1.61
35837216--35837306	25	3.6	25	77	0	101	30	21	20	26	1.98
35839791--35839869	29	2.7	29	90	0	122	21	13	25	39	1.90
35845542--35845602	20	3.1	19	77	15	61	11	26	21	40	1.87
35852519--35852547	10	3.0	10	95	5	51	10	6	10	72	1.28
35857668--35857845	27	6.6	27	82	6	189	27	14	27	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332