genome.fa.s13.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  133  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43303239--43303423	82	2.3	81	78	2	210	26	16	28	29	1.97
43307332--43307424	43	2.2	43	84	7	118	21	20	25	32	1.98
43318482--43318766	38	6.7	40	67	19	150	30	14	23	31	1.94
43318515--43318718	47	4.5	47	76	11	219	29	15	22	32	1.95
43318558--43318764	85	2.4	85	90	0	333	30	14	22	31	1.94
43321989--43322033	15	3.0	15	83	0	63	17	15	13	53	1.73
43324779--43324957	47	3.7	47	82	8	205	29	16	22	31	1.96
43327312--43327343	14	2.4	13	90	10	55	62	12	6	18	1.50
43334162--43334186	8	3.1	8	100	0	50	52	0	24	24	1.48
43339568--43339674	42	2.5	42	78	0	115	30	14	26	28	1.95
43347150--43347300	42	3.6	42	78	1	142	29	15	27	27	1.96
43358586--43358679	46	2.1	45	87	2	134	23	29	20	26	1.99
43376203--43376237	15	2.3	15	85	0	52	57	11	20	11	1.64
43383917--43383951	17	2.0	18	88	5	54	11	40	34	14	1.82
43388804--43388918	43	2.7	43	86	2	133	34	26	15	22	1.94
43396523--43396750	40	5.7	40	91	3	370	25	21	27	25	2.00
43396523--43396783	119	2.2	119	86	4	366	26	21	26	25	2.00
43413818--43413984	43	3.9	43	82	3	194	25	14	26	33	1.94
43417496--43417560	28	2.3	28	92	5	105	33	29	7	29	1.85
43417676--43417755	27	2.9	27	81	5	97	22	25	20	32	1.98
43417666--43417780	55	2.1	56	82	8	137	20	24	20	34	1.96
43418219--43418260	20	2.1	20	86	8	59	14	0	4	80	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43420607--43420758	27	5.6	27	77	5	92	38	21	7	32	1.82
43420674--43420951	54	5.1	53	81	6	238	42	19	6	31	1.77
43420674--43420922	81	3.0	80	76	13	215	42	19	6	31	1.77
43420688--43420894	27	7.7	27	75	9	154	43	19	6	30	1.75
43420872--43420957	27	3.1	27	75	20	88	39	16	8	36	1.78
43421011--43421075	27	2.4	27	79	5	69	35	16	24	23	1.95
43421883--43421952	25	2.8	25	91	0	104	27	24	22	25	2.00
43421883--43421965	25	3.4	25	82	11	84	30	21	22	25	1.99
43422172--43422254	31	2.7	30	90	7	132	28	14	26	30	1.95
43423869--43424028	30	5.3	30	82	8	157	40	13	23	22	1.89
43423839--43424044	89	2.3	90	80	6	240	39	15	24	20	1.91
43423804--43423997	30	6.5	30	80	4	171	39	15	24	20	1.91
43423785--43424028	119	2.1	119	86	1	337	39	15	24	20	1.91
43426175--43426276	23	4.2	24	80	6	84	33	21	24	20	1.97
43426196--43426276	24	3.3	24	82	5	92	30	23	24	20	1.99
43447193--43447240	20	2.4	20	75	0	60	20	29	18	31	1.97
43452910--43453098	56	3.4	56	91	0	297	26	12	24	35	1.92
43457347--43457443	34	2.9	34	74	11	101	25	25	23	24	2.00
43459285--43459476	40	4.8	40	87	3	237	22	21	29	26	1.99
43459285--43459502	80	2.7	79	83	6	244	22	22	28	26	1.99
43459287--43459502	40	5.4	39	84	7	215	23	21	29	26	1.99
43474049--43474232	67	2.8	64	75	8	185	29	16	29	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43478925--43478956	12	2.7	12	90	0	55	59	9	15	15	1.60
43478930--43479005	31	2.5	31	84	0	98	51	14	15	18	1.77
43479412--43479593	27	6.7	27	85	5	260	26	21	19	31	1.97
43479412--43479646	54	4.4	54	87	4	253	27	19	19	33	1.96
43479575--43479743	27	6.3	27	79	1	142	32	7	20	39	1.81
43479579--43479734	53	2.9	53	79	0	168	32	7	19	41	1.78
43479695--43479866	27	6.4	27	86	0	227	37	6	22	32	1.81
43479639--43479842	81	2.5	81	81	0	210	35	6	21	35	1.80
43479695--43479866	54	3.2	54	87	0	254	37	6	22	32	1.81
43479695--43479905	81	2.6	81	81	3	228	37	7	21	33	1.82
43479876--43480024	27	5.6	27	79	7	160	30	8	20	40	1.83
43495579--43495682	52	2.0	52	94	0	181	48	20	21	10	1.79
43509751--43509922	46	3.7	45	79	13	206	29	28	20	21	1.98
43509756--43509926	93	1.8	93	94	2	308	28	29	21	21	1.98
43511662--43511715	25	2.1	27	80	16	62	33	9	16	40	1.80
43523302--43523405	52	2.0	52	98	0	199	21	20	19	39	1.93
43529673--43529710	19	2.0	20	85	15	53	39	23	0	36	1.55
43529935--43530106	46	3.7	47	78	11	194	31	26	19	22	1.98
43529940--43530109	92	1.8	93	88	3	263	30	27	20	21	1.98
43536818--43536855	19	2.0	20	85	15	53	39	23	0	36	1.55
43537083--43537250	46	3.6	45	77	12	171	29	28	19	22	1.98
43537084--43537254	93	1.8	93	91	0	279	29	28	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43545793--43545844	26	2.0	26	100	0	104	34	15	3	46	1.64
43546024--43546076	21	2.4	21	84	9	61	26	16	3	52	1.61
43559599--43559646	23	2.1	23	100	0	96	25	29	25	20	1.99
43560443--43560626	92	2.0	92	100	0	368	29	14	25	31	1.94
43563473--43563530	23	2.5	23	82	0	80	20	17	20	41	1.90
43563672--43563743	33	2.1	34	82	2	83	22	22	25	30	1.99
43565013--43565158	40	3.7	40	88	3	206	22	25	25	26	2.00
43566420--43566448	14	2.0	15	93	6	51	27	0	20	51	1.47
43571742--43573364	44	37.7	44	80	7	1622	21	31	16	30	1.96
43572773--43572904	69	1.9	70	90	1	212	22	28	15	33	1.95
43572684--43572989	157	1.9	157	87	2	445	22	29	16	32	1.95
43571745--43573364	216	7.5	214	80	11	1186	21	31	16	30	1.96
43573377--43573543	80	2.0	84	87	9	245	28	26	17	26	1.98
43586585--43586624	19	2.0	20	86	13	57	77	2	5	15	1.04
43586828--43586857	12	2.5	12	100	0	60	6	26	53	13	1.64
43589209--43589286	27	2.9	27	80	1	95	23	14	23	39	1.90
43589191--43589293	53	1.9	53	80	7	120	24	15	21	38	1.92
43596662--43596821	43	3.8	41	71	16	128	23	16	28	31	1.96
43605000--43605172	46	3.7	46	74	13	174	22	19	27	30	1.98
43604997--43605167	93	1.8	93	91	0	279	22	19	28	29	1.98
43628959--43629264	47	6.5	47	91	0	459	31	12	30	25	1.92
43629008--43629083	24	3.2	24	65	29	63	28	11	32	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43629153--43629228	23	3.2	25	62	24	63	28	13	34	23	1.92
43628959--43629264	141	2.2	141	93	0	531	31	12	30	25	1.92
43629435--43629540	37	2.9	37	91	0	158	23	19	27	29	1.98
43636727--43636829	46	2.2	48	84	3	129	26	23	16	33	1.95
43639762--43639946	79	2.3	81	79	8	209	25	28	21	24	1.99
43639743--43639946	40	5.1	40	78	8	202	25	27	21	25	1.99
43646613--43646782	47	3.6	46	78	9	173	28	21	27	22	1.99
43646613--43646782	93	1.8	94	85	1	243	28	21	27	22	1.99
43651728--43651787	19	3.2	19	95	0	102	46	13	5	35	1.65
43663032--43663115	40	2.1	39	84	2	105	25	13	28	33	1.93
43665250--43665371	43	2.9	42	84	7	174	30	15	26	27	1.96
43668341--43668400	31	1.9	31	89	0	93	18	33	30	18	1.95
43671839--43672065	68	3.5	64	80	8	228	30	16	28	24	1.97
43679417--43680690	637	2.0	637	99	0	2512	28	20	24	25	1.99
43689265--43689485	38	5.7	40	82	8	231	25	28	21	25	1.99
43689265--43689485	78	2.8	77	80	7	250	25	28	21	25	1.99
43689417--43689494	40	1.9	41	82	10	97	26	28	20	24	1.99
43697172--43697395	40	5.7	40	81	7	224	25	28	21	25	1.99
43697139--43697395	40	6.5	38	78	10	200	24	28	21	26	1.99
43697172--43697395	79	2.8	78	78	9	213	25	28	21	25	1.99
43697327--43697404	40	1.9	41	82	10	97	26	28	20	24	1.99
43707759--43707897	50	2.8	50	86	0	188	30	27	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43707931--43708051	27	4.5	27	72	0	107	30	16	14	38	1.89
43712572--43712782	40	5.3	40	84	3	266	25	27	23	24	2.00
43714661--43714751	27	3.4	28	77	11	82	37	27	10	24	1.89
43715919--43715970	10	5.1	10	80	11	52	38	0	3	57	1.17
43715918--43715961	22	2.0	22	95	0	79	43	0	2	54	1.12
43725298--43725480	40	4.6	39	76	9	174	25	28	21	25	1.99
43725326--43725428	39	2.6	40	89	1	154	26	29	19	25	1.99
43725326--43725479	79	1.9	80	81	6	188	25	28	20	25	1.99
43731113--43731163	22	2.3	21	80	9	57	45	1	0	52	1.12
43731123--43731166	22	2.0	22	90	0	70	40	0	0	59	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332