Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  148  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48549304--48549351
23
2.1
23
100
0
96
33
4
27
35
1.76
48553675--48553711
19
2.0
18
89
5
56
27
16
37
18
1.92
48554949--48554982
18
1.9
18
88
5
52
41
20
8
29
1.82
48557354--48557436
40
2.1
40
88
4
123
30
12
21
36
1.90
48560712--48560750
20
2.0
20
89
0
60
25
7
20
46
1.77
48568518--48568556
20
2.0
20
89
0
60
25
7
20
46
1.77
48571212--48571495
48
5.9
48
73
0
246
28
16
27
27
1.97
48571210--48571490
95
2.9
95
85
4
359
29
16
27
27
1.97
48575271--48575415
40
3.6
40
85
4
193
25
24
26
23
2.00
48583297--48583441
40
3.6
39
83
6
164
25
23
26
24
2.00
48591554--48591678
63
2.0
63
95
0
223
28
8
20
41
1.82
48593621--48593670
25
2.0
25
88
3
75
20
24
24
32
1.98
48593743--48593865
46
2.7
44
80
7
131
23
26
22
27
2.00
48600125--48600164
21
2.0
20
85
5
53
22
22
37
17
1.94
48600572--48600599
12
2.3
12
100
0
56
14
14
21
50
1.78
48600653--48600699
22
2.1
22
100
0
94
46
19
8
25
1.77
48601306--48601441
50
2.8
49
82
6
168
27
27
17
27
1.98
48601430--48601532
46
2.3
45
80
11
113
27
29
15
28
1.96
48601442--48601572
46
2.8
46
78
6
122
26
29
16
27
1.96
48610466--48610500
11
3.3
11
84
8
54
17
11
14
57
1.66
48614169--48614232
27
2.3
27
78
2
74
21
26
20
31
1.98
48615871--48615943
29
2.6
28
84
6
94
27
16
28
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48615871--48615941
28
2.5
29
86
6
92
28
16
26
28
1.97
48618505--48618538
10
3.3
10
84
8
50
29
8
8
52
1.62
48625165--48625254
28
3.2
27
76
7
92
18
24
22
34
1.96
48625718--48625756
19
2.1
19
85
0
51
15
5
7
71
1.26
48630848--48630985
57
2.4
56
81
1
186
35
23
13
26
1.93
48640903--48641034
65
2.0
65
97
0
246
17
21
21
38
1.93
48645247--48645282
14
2.5
15
86
13
58
38
0
0
61
0.96
48647320--48647588
27
10.0
27
85
0
333
31
22
7
39
1.81
48647320--48647588
134
2.0
135
87
3
391
31
22
7
39
1.81
48647320--48647588
107
2.5
107
86
2
360
31
22
7
39
1.81
48648097--48648176
31
2.6
31
86
4
108
20
20
13
46
1.84
48648097--48648227
6
21.3
6
71
18
92
19
19
12
48
1.81
48648119--48648206
37
2.4
37
90
0
131
19
21
12
46
1.82
48648097--48648206
31
3.4
31
74
18
98
19
20
12
47
1.82
48648119--48648218
37
2.7
37
88
0
119
19
21
12
48
1.80
48656773--48656964
43
4.5
43
92
1
305
28
21
27
22
1.99
48657542--48657574
16
1.9
18
88
11
52
18
12
18
51
1.76
48660364--48660407
22
2.0
22
82
8
54
38
13
18
29
1.89
48660634--48660855
40
5.6
40
89
1
322
28
25
22
22
1.99
48663429--48663596
46
3.7
46
91
6
281
20
21
27
29
1.98
48663474--48663541
20
3.3
20
69
15
66
20
20
29
29
1.98
48663429--48663592
88
1.9
88
96
0
301
20
21
28
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48670405--48670778
50
7.7
48
84
11
460
34
6
27
31
1.81
48670405--48670778
99
3.8
96
85
9
469
34
6
27
31
1.81
48670926--48671035
36
3.0
36
89
4
157
24
17
30
28
1.97
48672394--48672429
14
2.5
15
90
4
56
33
0
0
66
0.92
48683819--48684201
48
7.9
48
92
1
604
35
6
26
31
1.82
48683819--48684201
146
2.6
144
92
1
604
35
6
26
31
1.82
48684349--48684457
37
2.9
37
91
0
173
23
18
30
27
1.98
48688463--48688502
21
1.9
21
84
0
53
37
0
2
60
1.11
48689005--48689213
38
5.0
38
74
18
166
29
24
15
30
1.96
48689045--48689183
48
2.9
48
88
1
208
30
22
16
30
1.96
48692184--48692223
15
2.7
15
84
0
53
17
17
15
50
1.79
48695426--48695675
55
4.7
53
81
7
253
34
18
25
22
1.96
48695428--48695677
108
2.4
110
82
9
322
34
18
25
22
1.96
48695749--48695793
23
1.9
24
90
4
74
46
11
20
22
1.81
48695832--48695862
16
1.9
16
93
0
53
41
3
22
32
1.70
48696837--48697086
136
1.8
136
94
0
446
25
17
21
35
1.95
48697462--48697590
48
2.7
48
85
1
170
30
14
22
32
1.94
48697564--48697640
38
2.0
38
85
5
102
29
16
24
28
1.97
48697947--48697979
17
1.9
17
100
0
66
66
9
12
12
1.44
48702464--48702588
62
2.0
62
96
0
232
20
12
20
45
1.84
48706297--48706384
43
2.0
43
93
0
149
20
27
10
42
1.84
48706759--48706818
30
2.0
30
93
0
102
28
8
31
31
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48707187--48707285
27
3.7
27
77
0
90
41
21
9
28
1.83
48707594--48707775
50
3.6
50
87
0
256
24
21
29
24
1.99
48713313--48713529
46
4.6
47
76
11
160
29
17
29
23
1.97
48716642--48716745
43
2.4
43
80
6
113
27
17
22
32
1.96
48729040--48729335
39
7.5
39
92
1
468
19
22
28
29
1.98
48733939--48734044
26
4.2
25
93
2
185
35
23
7
33
1.83
48739004--48739068
34
2.0
34
81
6
80
30
24
16
27
1.97
48740916--48741023
26
4.2
26
95
0
189
36
25
7
30
1.84
48743908--48744041
27
5.0
27
81
5
146
33
20
25
20
1.97
48743904--48744041
54
2.5
54
89
3
197
34
20
25
20
1.97
48748877--48749021
40
3.6
40
80
4
157
23
24
24
26
2.00
48751829--48752006
39
4.5
39
92
2
268
19
22
28
30
1.98
48760669--48760706
13
2.6
15
88
12
53
68
0
2
28
1.03
48760842--48760948
12
8.2
12
72
13
52
59
0
4
35
1.18
48760865--48760911
12
3.7
13
83
11
53
59
0
4
36
1.17
48760883--48760936
27
2.1
25
86
6
72
59
0
7
33
1.25
48760980--48761021
18
2.1
21
83
12
54
64
0
2
33
1.07
48760955--48761032
29
2.8
28
79
11
79
58
1
5
34
1.28
48761680--48761705
7
3.7
7
100
0
52
88
0
0
11
0.52
48762529--48762790
44
6.0
44
82
2
305
27
27
16
29
1.97
48762765--48762815
25
2.0
25
100
0
102
19
29
11
39
1.87
48762721--48762859
69
2.0
69
91
0
224
25
25
14
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48762599--48762991
201
2.0
201
85
1
536
26
25
15
32
1.95
48762790--48763072
44
6.4
44
87
0
395
27
25
15
32
1.95
48762677--48762903
113
2.0
113
90
0
355
25
25
14
33
1.95
48762633--48762946
157
2.0
157
89
0
475
26
25
14
32
1.95
48762566--48763031
245
1.9
245
85
2
641
27
25
15
31
1.95
48774733--48774786
18
2.9
18
78
10
56
79
5
3
11
1.02
48775259--48775305
12
3.7
13
83
11
53
59
0
4
36
1.17
48775349--48775409
30
2.0
30
87
12
88
57
1
3
37
1.25
48776111--48776144
7
4.7
7
89
7
50
32
14
14
38
1.87
48776110--48776144
15
2.4
14
85
4
52
34
14
14
37
1.86
48786834--48787061
46
5.0
46
89
1
314
39
14
24
21
1.91
48796144--48796224
26
3.1
26
80
7
101
20
17
25
35
1.95
48798808--48798985
27
6.6
27
84
3
205
29
28
15
26
1.96
48798829--48798984
82
1.9
81
88
3
233
29
28
15
26
1.96
48813242--48813416
49
3.5
49
89
1
242
26
17
26
29
1.98
48822363--48822487
42
2.9
44
72
14
109
26
14
24
34
1.94
48822668--48822711
21
2.0
22
86
4
63
40
0
27
31
1.56
48827779--48827950
46
3.7
46
78
14
201
20
19
29
29
1.97
48827772--48827943
93
1.8
93
93
2
301
21
20
29
28
1.98
48834843--48835014
46
3.7
46
79
14
210
20
19
29
30
1.97
48834836--48835007
93
1.8
93
95
2
310
21
20
29
29
1.98
48850144--48850172
14
2.0
15
93
6
51
6
24
0
68
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48851628--48851673
20
2.3
21
82
14
62
26
17
28
28
1.98
48855821--48855881
14
4.3
14
76
2
59
6
14
0
78
0.94
48855822--48855883
15
4.4
14
76
21
60
6
16
0
77
0.97
48857326--48857371
20
2.3
21
82
14
62
26
17
28
28
1.98
48860630--48860892
40
6.6
40
87
3
316
26
28
20
24
1.99
48868577--48868839
40
6.6
40
87
3
316
26
28
20
24
1.99
48870944--48870973
15
2.0
15
100
0
60
40
26
0
33
1.57
48876014--48876058
22
2.0
22
100
0
90
42
0
17
40
1.50
48877237--48877351
29
4.0
29
84
6
146
27
30
14
26
1.95
48877227--48877338
58
1.9
57
89
1
170
26
31
15
26
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332