genome.fa.s13.2.7.7.80.10.50.1000.290.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  290  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96672378--96672416	18	2.2	19	86	9	55	56	2	12	28	1.50
96673133--96673192	10	6.0	10	83	11	70	66	3	8	21	1.33
96674044--96674073	9	3.3	9	90	0	51	46	3	10	40	1.54
96681488--96681517	16	1.9	16	93	6	53	43	0	0	56	0.99
96685983--96686034	26	2.0	27	84	3	70	42	17	3	36	1.67
96686398--96686471	20	3.8	20	74	15	73	43	16	25	14	1.86
96689147--96689207	31	2.0	31	100	0	122	26	13	3	57	1.51
96689244--96689316	13	5.5	13	69	9	58	42	15	1	41	1.55
96689244--96689325	13	6.2	13	72	13	51	40	17	1	41	1.57
96689395--96689454	25	2.4	25	80	5	68	33	21	21	23	1.97
96692101--96692160	26	2.3	26	88	0	84	25	26	21	26	2.00
96692992--96693027	18	1.9	18	88	5	54	22	8	0	69	1.15
96694935--96694983	21	2.3	21	89	3	71	77	4	10	8	1.10
96695530--96695572	17	2.5	17	96	0	77	18	0	6	74	1.04
96698938--96698992	27	2.0	27	82	0	65	20	21	18	40	1.92
96699079--96699124	21	2.1	22	84	4	58	8	4	47	39	1.54
96700078--96700161	20	4.2	20	81	6	98	36	20	5	36	1.77
96700330--96700455	23	5.3	23	75	12	105	31	19	23	26	1.98
96701767--96701821	28	2.0	28	92	3	94	34	10	23	30	1.89
96707298--96707327	15	1.9	16	93	6	53	80	0	13	6	0.91
96716366--96716417	22	2.2	24	83	10	72	80	3	9	5	0.99
96718685--96719179	262	1.9	259	89	2	778	49	13	13	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96720764--96720804	18	2.2	20	86	8	59	43	2	0	53	1.13
96721315--96721373	30	2.0	30	83	6	77	49	20	5	25	1.69
96723425--96723457	14	2.3	15	89	5	50	78	0	0	21	0.75
96723809--96723853	13	3.5	12	82	14	54	71	6	2	20	1.20
96724772--96724820	25	1.9	26	88	12	75	44	0	4	51	1.20
96748237--96748515	41	6.8	41	90	5	381	27	19	24	28	1.99
96755903--96756182	41	6.8	41	91	5	390	27	19	24	28	1.99
96759476--96759560	38	2.2	38	89	6	127	32	20	24	22	1.97
96759476--96759578	38	2.7	38	83	7	111	31	21	26	21	1.98
96766776--96766860	38	2.2	38	87	6	118	34	18	23	23	1.97
96770676--96770719	18	2.4	18	100	0	88	40	11	22	25	1.87
96770412--96770950	280	1.9	282	94	0	965	33	15	20	30	1.94
96772150--96772271	48	2.5	48	78	0	136	22	28	18	29	1.98
96772731--96772761	16	1.9	16	100	0	62	77	0	3	19	0.90
96774348--96774388	20	2.1	20	90	4	66	41	0	56	2	1.13
96779068--96779113	20	2.3	21	82	14	62	26	17	28	28	1.98
96783073--96783110	20	1.9	20	84	10	51	23	23	26	26	2.00
96787586--96787634	24	2.1	24	92	3	82	30	10	34	24	1.89
96787732--96787810	33	2.4	33	81	14	83	41	5	3	49	1.43
96789032--96789100	34	2.0	34	100	0	138	28	30	5	34	1.81
96790259--96790294	6	6.3	6	93	6	58	66	16	0	16	1.25
96792536--96792578	5	7.8	5	80	19	50	72	0	6	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96797031--96797068	18	2.2	18	86	9	53	68	2	7	21	1.28
96804047--96804088	21	2.0	22	85	4	59	40	0	21	38	1.53
96810213--96810263	15	3.3	15	73	15	50	62	1	1	33	1.17
96810267--96810305	18	2.2	17	86	4	51	66	2	2	28	1.18
96810244--96810290	24	1.9	24	86	4	67	65	4	0	29	1.11
96812239--96812276	18	2.1	18	95	0	67	42	50	0	7	1.31
96812253--96812277	13	1.9	13	100	0	50	40	48	0	12	1.40
96812362--96812411	18	2.8	18	87	6	66	30	6	22	42	1.77
96812362--96812420	18	3.3	17	81	9	55	28	6	22	42	1.79
96812380--96812438	27	2.2	27	81	6	66	28	8	20	42	1.81
96814402--96814471	34	2.1	34	100	0	140	62	5	11	20	1.48
96814736--96814762	14	1.9	14	100	0	54	25	7	14	51	1.68
96816389--96816432	21	2.3	19	88	11	63	63	4	4	27	1.33
96818108--96818144	17	2.3	17	90	9	60	27	5	0	67	1.12
96824570--96824624	23	2.2	24	84	15	69	20	3	5	70	1.22
96827521--96827566	16	2.8	17	80	9	60	47	0	2	50	1.13
96828876--96829009	65	2.1	65	100	0	268	42	12	16	28	1.85
96830181--96830226	21	2.2	21	80	3	58	47	6	2	43	1.41
96830191--96830236	8	6.1	8	80	14	53	52	2	0	45	1.13
96830191--96830235	21	2.1	21	87	0	63	51	2	0	46	1.13
96834561--96834619	23	2.5	25	82	17	74	52	1	1	44	1.21
96834551--96834615	30	2.3	27	78	7	67	53	1	1	43	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96836447--96836549	38	2.6	39	74	7	102	23	20	26	30	1.99
96838618--96838740	42	2.9	43	93	2	212	32	26	13	26	1.94
96842447--96842771	170	1.9	170	89	3	512	38	17	9	33	1.83
96846216--96846279	31	2.1	31	93	0	110	32	20	7	39	1.81
96857728--96857801	38	1.9	38	83	5	96	31	10	18	39	1.86
96858417--96858469	27	1.9	27	96	3	97	71	0	1	26	0.96
96858783--96858825	15	2.9	15	86	10	54	67	4	0	27	1.10
96860029--96860066	17	2.3	18	86	13	55	31	0	0	68	0.90
96860055--96860126	30	2.3	31	86	11	94	43	0	5	51	1.25
96860593--96860631	20	2.0	20	85	10	53	46	5	0	48	1.24
96869206--96869231	6	4.3	6	100	0	52	0	53	15	30	1.42
96873041--96873132	44	2.1	44	89	4	141	32	22	22	21	1.98
96873261--96873292	13	2.5	13	100	0	64	50	21	0	28	1.49
96873562--96873591	13	2.2	14	94	5	53	3	16	0	80	0.85
96873950--96874021	20	3.5	20	75	15	67	56	1	2	38	1.22
96881375--96881411	18	2.1	17	90	5	56	8	18	0	72	1.08
96881375--96881411	14	2.7	14	88	12	51	8	18	0	72	1.08
96881433--96881468	3	12.0	3	100	0	72	66	0	0	33	0.92
96881714--96881763	16	3.2	16	78	13	59	58	0	6	36	1.23
96889312--96889378	34	1.9	35	85	8	93	19	23	11	44	1.84
96890432--96890551	60	2.0	61	81	6	145	26	27	19	26	1.99
96899514--96899655	69	2.0	69	82	6	171	22	22	21	33	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96903224--96903249	13	2.0	13	100	0	52	53	0	15	30	1.42
96904764--96904958	97	2.0	97	100	0	390	36	22	18	22	1.95
96908245--96908288	23	1.9	23	100	0	88	34	18	18	29	1.94
96910045--96910077	3	11.0	3	100	0	66	33	0	0	66	0.92
96910950--96911145	100	2.0	100	95	0	356	32	18	15	33	1.92
96912310--96912349	19	1.9	19	85	14	53	25	5	0	70	1.08
96912893--96912946	25	2.2	24	86	3	72	29	0	1	68	1.00
96917789--96917823	18	1.9	18	88	11	54	57	2	2	37	1.29
96917954--96918039	3	28.0	3	73	13	50	54	2	10	32	1.47
96917955--96918021	20	3.6	19	75	15	59	55	0	11	32	1.37
96925870--96925907	20	1.9	20	88	0	58	63	0	2	34	1.09
96926095--96926128	18	1.9	18	88	5	52	44	2	2	50	1.32
96926473--96926500	6	4.7	6	100	0	56	85	14	0	0	0.59
96927436--96927474	20	1.9	21	89	5	62	20	0	5	74	1.01
96927441--96927482	20	2.2	20	82	4	50	21	2	7	69	1.25
96927696--96927844	41	3.7	40	85	6	185	18	23	15	42	1.89
96927704--96927860	82	1.9	82	83	5	201	21	24	14	39	1.91
96931935--96932017	43	1.9	43	87	0	121	57	12	15	14	1.65
96934067--96934105	20	1.9	19	85	10	51	53	15	7	23	1.67
96937669--96937923	79	3.2	79	89	1	359	18	19	24	37	1.94
96940565--96940629	19	3.2	21	67	20	57	12	27	21	38	1.89
96940547--96940647	39	2.6	39	88	0	148	13	27	22	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96942959--96943134	46	3.8	45	78	11	205	21	21	28	28	1.98
96942956--96943126	93	1.8	93	93	2	299	21	21	29	27	1.99
96953701--96953845	3	47.0	3	67	20	61	33	2	3	60	1.25
96953693--96953753	9	6.7	9	79	9	61	36	3	1	59	1.24
96953693--96953753	18	3.3	18	80	11	70	36	3	1	59	1.24
96953728--96953812	19	4.4	18	76	15	64	32	1	5	60	1.29
96954008--96954065	24	2.5	22	78	13	64	25	3	5	65	1.29
96965858--96966301	154	2.9	152	90	4	678	31	16	18	33	1.94
96965858--96966301	75	5.8	76	84	4	543	31	16	18	33	1.94
96968087--96968227	3	47.0	3	70	19	75	34	2	2	61	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332