genome.fa.s13.2.7.7.80.10.50.1000.273.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  273  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91323181--91323351	93	1.8	93	94	0	306	27	29	21	21	1.98
91323173--91323348	46	3.8	46	81	10	214	28	29	21	21	1.98
91325700--91325747	15	3.2	15	80	11	62	58	14	14	12	1.64
91325691--91325747	30	2.0	28	89	6	87	57	15	15	10	1.64
91328679--91328849	93	1.8	93	94	0	306	27	29	21	21	1.98
91328671--91328846	46	3.8	46	81	10	214	28	29	21	21	1.98
91331419--91331571	44	3.7	39	76	14	114	30	17	22	29	1.97
91331444--91331922	44	10.6	44	71	8	266	33	17	19	29	1.95
91331534--91331716	96	1.9	96	84	4	244	36	15	16	31	1.90
91331630--91331891	89	3.0	86	76	7	258	34	17	19	29	1.94
91338945--91338975	14	2.2	14	94	0	53	32	9	19	38	1.84
91338959--91339023	20	3.3	19	85	6	85	26	12	13	47	1.78
91343470--91343520	25	2.0	26	88	3	77	37	17	9	35	1.83
91343624--91343671	24	2.0	23	84	11	62	45	2	2	50	1.25
91346235--91346269	18	1.9	18	88	0	52	45	17	11	25	1.81
91351157--91351281	55	2.3	55	87	5	173	29	26	29	14	1.95
91359071--91359342	135	2.0	137	97	1	521	59	8	9	22	1.55
91376420--91376451	16	2.0	16	93	0	55	56	34	0	9	1.32
91377725--91377769	16	2.9	16	86	3	65	51	13	22	13	1.75
91377978--91378090	28	4.0	28	85	3	129	28	14	29	28	1.95
91377991--91378099	57	1.9	56	84	1	146	28	13	29	28	1.94
91379638--91379694	30	1.9	30	89	7	89	33	22	1	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91381009--91381125	62	1.9	61	86	5	166	47	5	5	41	1.47
91383226--91383255	15	1.9	16	93	6	53	70	6	10	13	1.34
91391411--91391610	27	7.4	27	84	2	213	30	22	6	41	1.78
91391434--91391610	54	3.3	54	87	1	248	29	22	6	41	1.79
91391419--91391610	81	2.4	81	86	3	244	30	20	6	42	1.78
91391642--91391790	27	5.6	27	81	7	153	42	20	7	29	1.79
91391609--91391763	54	2.9	54	81	5	154	40	18	10	30	1.85
91391908--91391984	27	2.9	28	79	11	81	36	18	20	24	1.95
91392738--91392807	25	2.8	25	91	0	104	27	22	22	27	1.99
91392763--91392834	25	3.0	24	78	13	67	29	20	22	27	1.99
91393027--91393109	31	2.7	31	94	3	143	28	15	26	28	1.96
91394823--91394904	9	9.1	9	76	0	83	12	30	12	45	1.78
91394859--91394911	18	2.9	17	75	10	52	13	35	13	37	1.83
91400047--91400270	20	11.2	20	72	5	139	38	16	29	14	1.89
91400029--91400278	40	6.2	40	83	1	286	40	16	28	14	1.88
91400770--91400809	21	1.9	21	85	10	55	47	7	5	40	1.54
91402147--91402190	22	2.0	22	95	0	79	29	0	22	47	1.51
91402790--91402823	18	1.9	18	88	5	52	67	0	0	32	0.91
91404949--91404982	16	2.1	16	100	0	68	55	11	5	26	1.58
91405283--91405582	147	2.0	147	93	0	510	30	13	22	33	1.93
91405430--91405760	174	1.9	174	94	0	590	28	14	21	35	1.93
91406200--91406248	22	2.3	21	82	10	64	16	10	2	71	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91406643--91406797	53	2.9	53	84	5	215	32	20	14	32	1.93
91407346--91407424	29	2.6	30	82	7	81	35	5	11	48	1.61
91413500--91413547	21	2.3	21	92	0	78	43	4	10	41	1.58
91414624--91414810	96	1.9	96	81	4	225	19	17	29	33	1.95
91424933--91425099	49	3.6	46	80	9	178	25	29	20	24	1.99
91424930--91425147	93	2.3	96	82	8	261	25	28	21	24	1.99
91425071--91425290	46	4.6	48	75	8	193	22	28	20	29	1.98
91424930--91425290	94	3.8	93	77	8	250	24	28	20	26	1.99
91433071--91433125	25	2.2	25	93	0	92	18	21	40	20	1.92
91434222--91434276	25	2.3	23	78	12	58	43	3	16	36	1.65
91434332--91434406	22	3.3	22	75	10	69	60	5	5	29	1.41
91434338--91434482	25	5.9	25	73	11	111	56	4	6	31	1.47
91434376--91434545	23	7.3	23	65	20	68	56	3	4	35	1.37
91434829--91434867	16	2.4	16	86	0	51	43	28	5	23	1.75
91435026--91435123	30	3.3	30	94	0	169	18	6	50	25	1.70
91435060--91435113	18	3.3	18	66	28	57	20	7	48	24	1.75
91435775--91436329	90	6.3	88	79	8	472	36	18	16	28	1.92
91435775--91436328	177	3.1	175	78	9	470	36	18	16	28	1.92
91435775--91436351	179	3.2	178	78	9	466	37	18	16	28	1.92
91436262--91436865	73	8.2	74	84	4	731	33	19	16	30	1.93
91436256--91437037	148	5.1	147	82	8	774	34	19	16	29	1.94
91436781--91437016	85	2.7	85	85	6	289	35	19	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91440774--91441880	73	13.7	83	71	17	418	29	17	19	34	1.94
91440666--91441093	171	2.5	168	79	8	434	26	17	18	37	1.93
91441011--91441594	73	7.8	73	81	6	645	32	15	19	33	1.93
91441028--91441594	150	3.8	145	84	7	631	32	16	19	32	1.94
91441030--91441594	223	2.5	222	86	7	768	32	16	19	32	1.94
91442769--91442852	31	2.8	30	87	5	125	22	46	9	21	1.80
91442760--91442858	30	3.3	31	84	9	141	24	49	8	18	1.74
91443477--91443539	25	2.5	24	84	7	72	30	4	6	58	1.43
91444742--91444796	25	2.2	25	93	0	92	20	40	21	18	1.92
91448200--91448583	86	4.6	84	84	9	407	34	21	18	25	1.96
91448410--91448440	13	2.4	13	88	0	53	70	6	9	12	1.31
91461497--91461537	15	2.7	16	85	7	50	24	26	19	29	1.98
91462131--91462162	15	2.1	15	100	0	64	40	0	12	46	1.42
91466307--91466345	20	2.0	20	90	5	62	30	5	5	58	1.41
91468876--91468943	35	1.9	35	93	0	118	35	23	22	19	1.96
91471343--91471385	17	2.4	19	81	14	56	34	0	0	65	0.93
91481662--91481837	91	1.9	90	90	1	280	30	10	18	41	1.83
91490280--91490309	11	2.9	10	90	9	51	13	0	0	86	0.57
91491528--91491670	22	6.0	22	70	19	92	58	5	2	33	1.33
91491710--91491755	18	2.5	19	82	10	60	60	2	2	34	1.21
91491921--91491969	20	2.4	20	80	10	55	59	8	0	32	1.27
91492049--91492087	19	2.1	19	95	0	69	51	5	12	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91492117--91492162	23	2.0	23	83	4	58	54	10	4	30	1.55
91494090--91494321	90	2.6	87	82	9	265	36	18	16	28	1.93
91494231--91494613	82	5.0	78	78	7	392	31	20	18	30	1.96
91494241--91494630	76	5.1	76	79	6	405	31	20	17	30	1.96
91494265--91494700	232	1.8	238	82	7	557	31	19	17	31	1.95
91494230--91494630	150	2.6	153	85	4	499	32	19	17	29	1.95
91494537--91494700	90	1.8	90	86	2	240	35	17	15	31	1.92
91494536--91494721	90	2.1	91	82	5	234	39	16	15	28	1.89
91502999--91503024	4	6.5	4	100	0	52	53	0	23	23	1.46
91503012--91503098	38	2.3	38	94	3	151	41	4	21	32	1.74
91506858--91507000	22	6.0	22	70	19	92	58	5	2	33	1.33
91507373--91507411	19	2.1	19	90	0	60	53	5	10	30	1.56
91507441--91507486	23	2.0	23	83	4	58	54	10	4	30	1.55
91507597--91507692	11	9.0	10	70	15	50	60	3	5	31	1.34
91507553--91507659	58	2.0	51	80	12	115	57	1	5	34	1.33
91515637--91515661	13	1.9	13	100	0	50	16	40	28	16	1.89
91520532--91520577	23	2.0	23	91	8	76	26	13	26	34	1.92
91521366--91521424	29	2.0	29	100	0	118	40	23	16	18	1.91
91521517--91521567	25	2.1	24	85	10	68	41	1	3	52	1.31
91521548--91521602	22	2.6	21	82	8	58	38	1	1	58	1.20
91521847--91521889	23	1.9	23	85	4	61	16	6	4	72	1.24
91521895--91521920	4	6.5	4	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91521956--91522018	21	3.0	20	80	20	67	38	0	1	60	1.07
91521936--91522019	43	2.0	44	81	9	104	39	0	3	57	1.16
91521961--91522043	22	4.0	21	76	10	80	39	1	0	59	1.05
91522107--91522165	22	2.7	23	75	19	72	33	0	3	62	1.12
91522383--91522412	14	2.1	14	93	0	51	63	3	0	33	1.11
91522381--91522441	22	2.6	24	73	21	67	59	3	0	37	1.14
91522478--91522531	21	2.5	22	85	11	69	59	1	1	37	1.19
91522580--91522612	13	2.5	13	95	5	57	75	0	0	24	0.80
91526462--91526507	19	2.3	20	92	7	85	47	15	10	26	1.78
91526491--91526528	14	2.7	14	91	0	58	39	13	5	42	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332