genome.fa.s13.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  171  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56444721--56444797	20	4.0	20	90	6	106	35	20	9	35	1.85
56444751--56444799	5	10.2	5	75	16	50	36	20	6	36	1.78
56444743--56444796	9	5.5	10	75	16	51	35	18	9	37	1.83
56452814--56452897	26	3.3	26	85	8	113	25	23	21	29	1.99
56452950--56453021	20	3.7	20	87	7	96	33	18	11	37	1.86
56452964--56453000	11	3.5	11	78	14	51	32	21	10	35	1.88
56461643--56461694	25	2.1	25	100	0	104	38	7	25	28	1.83
56468505--56468532	6	4.7	6	100	0	56	46	0	0	53	1.00
56469950--56469990	19	2.2	19	100	0	82	63	4	0	31	1.15
56470052--56470112	21	2.9	21	85	4	70	29	8	1	60	1.35
56470728--56470758	15	2.0	16	93	6	55	29	0	0	70	0.87
56472819--56472949	44	2.9	45	78	13	126	35	17	22	24	1.95
56472811--56472923	23	4.9	23	72	12	99	37	15	23	23	1.93
56481243--56481283	18	2.3	18	86	0	55	19	2	36	41	1.65
56481415--56481504	44	2.0	44	95	0	162	37	12	22	27	1.90
56481712--56481986	133	2.1	133	90	1	435	28	25	18	27	1.98
56496193--56496233	18	2.3	18	86	0	55	19	2	36	41	1.65
56498432--56498503	33	2.2	32	88	11	103	40	0	6	52	1.28
56499202--56499253	11	4.5	11	81	11	50	57	0	13	28	1.36
56499207--56499247	12	3.5	11	90	6	55	56	0	17	26	1.41
56512241--56512334	39	2.4	38	85	5	127	35	41	11	11	1.78
56514468--56514530	28	2.2	29	88	8	94	31	23	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56514636--56514700	28	2.3	28	89	0	103	30	9	24	35	1.87
56519166--56519303	40	3.5	40	94	3	226	23	28	23	23	1.99
56524961--56525015	28	2.0	28	85	7	76	32	21	21	23	1.98
56525125--56525185	28	2.2	28	93	0	104	32	8	24	34	1.85
56525434--56525463	8	3.8	8	90	0	51	3	23	23	50	1.64
56530701--56530757	29	2.0	29	92	0	96	45	0	1	52	1.11
56530818--56530889	33	2.2	32	88	11	103	40	0	6	52	1.28
56531586--56531637	11	4.5	11	81	11	50	57	0	13	28	1.36
56531591--56531631	12	3.5	11	90	6	55	56	0	17	26	1.41
56532296--56532387	44	2.1	44	84	8	116	21	21	23	32	1.98
56534081--56534168	22	3.9	22	80	10	90	35	18	23	22	1.96
56534075--56534216	45	3.0	45	83	11	146	35	17	21	25	1.95
56534727--56534787	27	2.1	27	82	8	68	31	21	1	45	1.61
56539746--56539785	13	3.1	13	92	0	71	45	7	17	30	1.76
56540068--56540108	20	2.0	20	100	0	82	36	4	14	43	1.67
56540180--56540227	25	1.9	25	83	8	62	45	2	0	52	1.12
56540144--56540276	74	1.9	72	86	9	193	45	3	2	49	1.30
56552302--56552336	6	6.2	6	96	3	56	45	0	0	54	0.99
56552593--56552669	21	3.8	19	77	14	66	44	0	1	54	1.08
56552614--56552656	22	2.0	21	86	4	59	41	0	0	58	0.98
56552611--56552667	18	3.5	17	75	18	59	45	0	0	54	0.99
56552974--56553053	25	2.9	26	77	17	90	32	1	12	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56553687--56553715	15	2.0	15	93	6	51	13	0	0	86	0.58
56558129--56558158	13	2.2	14	94	5	53	13	0	0	86	0.57
56559229--56559267	6	6.5	6	100	0	78	64	0	0	35	0.94
56564247--56564592	93	3.8	93	87	3	531	23	17	27	31	1.97
56564388--56564553	47	3.6	47	74	8	176	23	16	28	31	1.96
56567288--56567368	41	2.0	41	97	0	153	35	13	13	37	1.84
56572310--56572348	20	2.0	20	84	0	51	20	17	20	41	1.91
56572340--56572417	39	2.0	40	87	2	113	23	12	21	42	1.87
56575704--56575828	47	2.7	48	80	14	145	36	1	1	60	1.16
56575752--56575840	26	3.7	24	78	11	76	35	3	1	59	1.21
56575753--56575826	23	3.2	22	72	11	67	36	1	1	60	1.13
56576058--56576107	25	2.0	25	88	0	73	16	6	8	70	1.32
56578547--56578664	39	3.0	39	79	9	134	31	23	21	23	1.98
56584690--56584807	42	2.8	42	82	10	141	21	17	26	34	1.95
56587011--56587107	40	2.4	41	84	6	119	28	27	16	26	1.97
56594437--56594530	40	2.3	41	87	3	129	29	26	15	27	1.96
56604662--56605309	47	13.6	47	92	2	1035	29	29	8	33	1.86
56604662--56605309	96	6.8	96	95	1	1128	29	29	8	33	1.86
56604662--56605309	143	4.5	144	93	2	1101	29	29	8	33	1.86
56605168--56605243	22	3.3	22	66	16	64	26	30	10	32	1.90
56613160--56613294	43	3.1	43	75	7	114	33	25	15	25	1.95
56619788--56619857	35	2.0	35	100	0	140	37	25	5	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56619950--56620006	27	2.1	27	100	0	114	36	36	10	15	1.82
56623148--56623198	24	2.3	22	83	12	68	37	9	15	37	1.81
56623154--56623203	24	2.1	24	96	0	91	38	12	16	34	1.85
56624421--56624474	30	1.9	30	82	14	71	53	9	5	31	1.56
56625703--56625789	39	2.2	39	93	0	147	22	22	26	27	2.00
56632519--56632683	39	4.2	39	95	0	285	21	21	27	29	1.99
56633134--56633210	38	2.0	38	100	0	154	33	12	10	42	1.77
56635623--56635810	40	4.7	40	89	3	290	25	26	22	25	2.00
56635600--56635806	80	2.6	77	89	4	306	25	26	22	25	2.00
56645711--56645742	13	2.5	13	100	0	64	18	31	31	18	1.95
56647068--56647097	15	2.0	15	93	0	51	56	33	6	3	1.42
56649371--56649412	21	2.0	21	86	9	59	30	9	4	54	1.53
56663482--56663524	23	1.9	23	85	4	61	41	4	11	41	1.62
56664680--56664803	39	3.2	39	88	0	176	25	29	21	23	1.99
56670798--56671059	53	5.0	53	74	9	207	22	23	16	37	1.93
56670795--56671006	53	3.9	53	80	4	210	21	23	16	38	1.93
56670985--56671106	47	2.6	47	93	0	199	26	23	13	36	1.91
56671123--56671240	45	2.6	45	82	8	139	20	23	20	35	1.96
56671246--56671329	44	1.9	44	82	4	107	26	23	11	38	1.90
56674203--56674292	38	2.4	38	84	0	108	23	20	26	30	1.98
56680034--56680258	40	5.7	40	84	5	269	25	27	21	24	1.99
56680034--56680258	79	2.8	80	86	6	296	25	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56680034--56680258	119	1.9	120	84	6	305	25	27	21	24	1.99
56682547--56682659	38	2.9	38	81	2	109	23	23	25	28	1.99
56682665--56682774	43	2.6	43	95	0	193	10	27	32	30	1.89
56683106--56683217	45	2.5	44	83	11	131	27	19	25	27	1.99
56689773--56689958	55	3.5	53	83	5	221	22	24	17	36	1.94
56689773--56689972	54	3.7	54	84	4	233	22	24	16	37	1.93
56689945--56690066	47	2.6	47	93	0	208	27	22	13	36	1.91
56692963--56692996	6	5.7	6	85	0	50	23	26	0	50	1.50
56693382--56693425	21	2.1	21	95	0	79	20	22	6	50	1.72
56702309--56702358	11	4.7	11	75	7	50	34	14	22	30	1.93
56702309--56702366	21	2.8	20	78	5	62	34	12	20	32	1.90
56702414--56702485	25	3.0	24	80	13	76	29	25	22	23	1.99
56720828--56720998	93	1.8	93	92	0	288	30	27	19	22	1.98
56720823--56720995	46	3.7	46	79	10	208	31	26	19	22	1.98
56729014--56729060	24	2.0	24	83	8	60	59	0	4	36	1.17
56729039--56729084	20	2.4	19	85	7	67	71	0	4	23	1.03
56729051--56729093	19	2.3	18	80	11	50	76	0	9	13	1.01
56729999--56730036	6	6.3	6	87	0	58	23	15	13	47	1.81
56735540--56735612	23	3.2	23	62	14	60	52	12	21	13	1.74
56735539--56735632	46	2.0	46	95	0	170	48	12	22	15	1.79
56736478--56736524	24	2.0	24	83	8	60	59	0	4	36	1.17
56736503--56736548	20	2.4	19	85	7	67	71	0	4	23	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56736515--56736557	19	2.3	18	80	11	50	76	0	9	13	1.01
56736586--56736626	11	3.5	12	83	12	50	78	0	21	0	0.76
56738864--56739031	40	4.2	40	82	3	194	23	28	23	24	2.00
56740341--56740481	46	3.0	45	76	20	123	28	29	19	22	1.98
56743031--56743202	93	1.8	93	95	2	310	28	29	20	20	1.98
56743024--56743199	46	3.8	46	79	14	209	29	29	20	20	1.98
56744450--56744529	40	2.0	40	90	0	124	36	26	13	23	1.92
56752492--56752676	40	4.6	40	83	3	237	22	27	24	24	2.00
56754428--56754516	6	14.8	6	92	0	133	22	15	12	49	1.78
56758452--56758491	11	3.6	11	86	0	62	17	0	32	50	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332