genome.fa.s13.2.7.7.80.10.50.1000.239.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  239  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79384500--79384694	20	9.8	20	77	0	120	12	25	16	45	1.83
79384526--79384713	60	3.1	60	79	5	211	13	25	18	43	1.86
79385088--79385133	23	2.0	23	95	0	83	36	17	13	32	1.88
79387836--79387877	11	3.6	11	81	12	57	35	0	4	59	1.19
79391511--79391642	69	1.9	67	82	8	160	31	12	13	41	1.82
79398108--79398132	13	1.9	13	100	0	50	88	0	12	0	0.53
79419517--79419585	18	3.8	18	69	20	54	56	2	4	36	1.34
79420975--79421141	46	3.6	45	84	4	210	20	20	13	45	1.84
79421120--79421277	45	3.5	44	81	1	172	25	20	14	39	1.91
79423211--79423260	25	1.9	27	88	8	77	30	6	0	64	1.18
79423211--79423267	25	2.3	24	82	14	64	26	5	0	68	1.11
79423610--79423652	22	2.0	22	85	0	59	13	6	6	72	1.27
79431737--79431893	43	3.7	42	78	10	131	35	26	14	24	1.94
79451606--79451760	43	3.6	42	77	11	156	31	23	18	27	1.97
79463041--79463075	16	2.2	16	89	0	52	48	0	0	51	1.00
79478034--79478104	35	2.0	35	100	0	142	23	14	8	53	1.68
79482833--79482877	17	2.6	17	85	3	63	44	8	2	44	1.47
79482969--79483029	11	5.5	11	72	14	54	59	3	1	36	1.24
79482971--79483034	29	2.1	32	85	8	89	59	3	1	35	1.23
79483378--79483428	23	2.3	22	82	3	66	62	1	0	35	1.06
79483622--79483681	29	2.1	28	90	6	95	41	5	3	50	1.41
79483761--79483841	37	2.2	35	83	12	101	54	3	12	29	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79483775--79483848	37	2.0	37	97	0	139	51	4	13	31	1.60
79488045--79488321	50	5.6	50	83	5	330	23	27	19	29	1.98
79488436--79488474	21	2.0	20	85	10	53	51	17	0	30	1.46
79489949--79489982	6	5.7	6	92	0	59	17	26	0	55	1.42
79492917--79493054	69	2.0	69	97	0	258	34	5	21	39	1.76
79496758--79496990	46	5.0	46	84	6	297	39	14	23	22	1.90
79496772--79497038	96	2.8	96	90	3	391	41	14	23	20	1.89
79497299--79497345	25	2.0	25	83	8	62	53	4	14	27	1.60
79501952--79502951	503	2.0	500	87	3	1463	30	19	11	37	1.88
79521617--79521841	49	4.5	49	88	2	315	25	18	27	28	1.98
79521615--79521841	99	2.3	100	87	2	323	25	18	26	28	1.98
79526877--79526981	30	3.5	30	96	1	185	40	0	24	34	1.56
79526877--79526994	30	4.0	29	91	7	177	40	0	23	34	1.61
79529402--79529441	18	2.3	18	86	4	55	20	40	22	17	1.92
79530097--79530156	3	20.3	3	83	10	79	33	3	0	63	1.11
79530740--79530788	18	2.7	18	87	6	55	42	0	28	28	1.56
79531415--79531496	21	3.9	21	79	6	85	23	19	19	37	1.94
79532308--79532358	22	2.4	22	70	9	52	15	1	29	52	1.54
79536827--79536884	30	1.9	30	86	6	82	15	24	34	25	1.95
79538689--79538757	29	2.3	29	80	11	77	71	1	7	20	1.18
79541207--79541246	18	2.2	18	100	0	80	35	15	12	37	1.85
79543842--79543878	19	1.9	19	94	0	65	62	0	5	32	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79554488--79554534	19	2.4	19	89	10	69	53	2	8	36	1.44
79554519--79554592	30	2.5	29	80	6	87	52	0	0	47	1.00
79554558--79554602	23	2.0	23	82	8	56	48	0	2	48	1.13
79554572--79554651	10	7.8	10	72	15	56	52	0	2	45	1.14
79554609--79554671	29	2.2	28	82	2	72	60	0	3	36	1.13
79557169--79557219	26	1.9	27	88	4	77	31	3	3	60	1.33
79557292--79557364	8	8.8	8	74	14	58	32	1	1	64	1.11
79557314--79557374	31	1.9	32	83	9	81	39	1	0	59	1.08
79562257--79562282	13	2.0	13	100	0	52	38	0	0	61	0.96
79563065--79563145	40	2.0	40	82	0	99	35	8	16	39	1.79
79563357--79563462	45	2.4	45	81	7	128	21	16	18	42	1.89
79564217--79564242	11	2.4	11	100	0	52	84	0	0	15	0.62
79564216--79564249	18	1.9	18	94	5	61	85	0	0	14	0.60
79564216--79564250	6	5.8	6	87	12	54	85	0	0	14	0.59
79564974--79565114	41	3.3	41	79	12	142	29	27	18	24	1.98
79564959--79565114	45	3.7	41	76	11	145	29	28	19	23	1.98
79567969--79568035	21	3.2	21	84	0	89	2	49	19	28	1.63
79584680--79584850	41	4.0	43	76	15	149	28	27	19	24	1.98
79595259--79595285	14	1.9	14	100	0	54	29	14	18	37	1.91
79600206--79600263	26	2.2	26	93	0	98	34	5	24	36	1.78
79608191--79608374	40	4.6	40	82	9	223	25	22	26	25	2.00
79608191--79608410	80	2.8	80	84	6	272	24	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79610147--79610174	10	2.8	10	100	0	56	53	10	17	17	1.72
79616349--79616532	40	4.6	40	79	6	203	25	23	26	25	2.00
79616349--79616568	80	2.8	79	81	6	241	25	22	26	25	2.00
79620111--79620360	124	2.0	124	99	0	491	33	16	18	31	1.93
79620405--79620460	20	2.7	21	78	8	62	39	8	8	42	1.68
79624069--79624093	12	2.1	12	100	0	50	24	0	8	68	1.16
79624081--79624142	24	2.6	24	79	5	63	29	0	6	64	1.18
79625146--79625215	36	1.9	36	88	0	104	57	0	2	40	1.14
79625331--79625377	20	2.6	18	78	15	60	53	4	0	42	1.20
79626396--79626439	1	44.0	1	81	0	52	90	0	9	0	0.44
79626398--79626439	19	2.2	19	100	0	84	90	0	9	0	0.45
79630050--79630092	22	1.9	23	85	4	61	60	2	9	27	1.40
79631530--79631652	58	2.1	58	87	3	176	51	4	0	44	1.20
79631530--79631680	58	2.6	56	80	13	139	52	3	1	42	1.28
79633818--79633869	24	2.2	24	96	0	95	36	28	5	28	1.80
79634667--79634702	18	2.0	18	94	0	63	16	19	27	36	1.93
79635724--79635843	59	2.0	60	98	1	233	53	20	11	15	1.72
79641632--79641730	52	1.9	51	81	6	119	47	14	13	25	1.80
79642291--79642346	27	2.1	27	96	0	103	39	23	7	30	1.81
79642640--79642801	63	2.6	64	80	4	188	24	27	20	27	1.99
79642640--79642823	63	2.9	63	78	4	176	26	26	20	26	1.99
79643209--79643247	20	2.0	20	100	0	78	33	30	10	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79649170--79649293	49	2.5	49	85	6	153	21	29	22	26	1.99
79649406--79649528	48	2.6	48	86	0	183	27	25	14	32	1.95
79652350--79652462	37	2.8	40	77	10	133	32	16	17	32	1.93
79658356--79658442	34	2.6	34	84	0	111	45	17	8	28	1.76
79658900--79658929	15	2.1	15	93	6	53	30	6	26	36	1.82
79660608--79660720	43	2.6	44	82	13	137	23	19	31	24	1.98
79661254--79661297	20	2.2	20	92	8	72	43	0	22	34	1.54
79662728--79662789	32	1.9	32	83	0	79	27	37	12	22	1.91
79671308--79671364	12	4.8	12	75	14	55	63	0	24	12	1.29
79675276--79675317	16	2.6	16	84	0	57	45	0	2	52	1.13
79675479--79675548	31	2.3	31	82	5	88	35	8	10	45	1.68
79677795--79677821	2	13.5	2	100	0	54	51	0	0	48	1.00
79678891--79678920	2	15.0	2	100	0	60	50	0	0	50	1.00
79681049--79681210	81	2.0	81	100	0	324	28	29	18	23	1.98
79687466--79687496	12	2.7	11	90	9	53	29	0	0	70	0.87
79687477--79687535	30	2.0	30	93	0	100	28	1	10	59	1.40
79691879--79691961	40	2.1	39	86	2	112	38	28	18	14	1.90
79691905--79692073	39	4.3	39	92	1	259	31	28	21	17	1.96
79703908--79703960	19	2.6	19	79	8	52	39	11	9	39	1.74
79705316--79705508	40	5.1	40	80	12	244	35	26	20	17	1.94
79705394--79705451	30	1.9	30	92	0	98	37	25	22	13	1.91
79705354--79705491	70	2.0	70	91	0	222	35	26	21	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79713336--79713520	40	4.6	40	88	0	262	32	26	21	19	1.97
79716843--79716900	25	2.3	25	96	0	107	39	15	5	39	1.70
79726285--79726552	49	5.6	47	70	17	144	26	19	28	25	1.99
79726288--79726508	93	2.3	93	79	9	223	26	20	28	24	1.99
79726288--79726508	49	4.6	49	74	12	208	26	20	28	24	1.99
79732306--79732345	21	2.0	20	85	5	53	52	10	30	7	1.62
79734872--79734989	23	4.9	24	81	14	129	22	24	20	32	1.98
79738951--79739037	28	3.1	28	75	15	90	20	14	25	39	1.91
79741921--79742014	38	2.5	38	98	0	179	32	22	14	29	1.94
79743706--79743748	13	3.1	13	80	12	50	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332