Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  282  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94190550--94190613
16
4.1
16
89
4
103
21
34
6
37
1.79
94190550--94190613
31
2.0
32
93
3
112
21
34
6
37
1.79
94190757--94190795
14
2.8
14
96
0
69
38
15
7
38
1.76
94193761--94193802
18
2.3
18
95
0
75
40
11
19
28
1.87
94198992--94199042
19
2.7
19
84
3
68
25
3
1
68
1.17
94199064--94199144
24
3.2
24
70
16
63
33
2
4
59
1.32
94199122--94199186
21
3.1
21
80
10
80
35
3
0
61
1.12
94199073--94199190
18
6.5
18
73
17
93
33
3
1
61
1.23
94199133--94199182
23
2.1
24
85
10
68
38
4
0
58
1.17
94199556--94199581
7
3.7
7
100
0
52
42
0
0
57
0.98
94211502--94211561
16
3.7
16
71
4
57
23
31
1
43
1.64
94222635--94222717
41
2.0
41
97
0
157
31
3
9
55
1.49
94223851--94223924
29
2.5
29
80
4
76
52
5
5
36
1.47
94230116--94230254
60
2.3
59
83
9
167
25
20
26
26
1.99
94231862--94231886
13
1.9
13
100
0
50
28
0
32
40
1.57
94231932--94232015
28
3.0
28
91
1
132
19
3
30
46
1.66
94231936--94232029
28
3.6
24
78
18
91
15
4
34
45
1.66
94232241--94232292
21
2.5
21
77
0
68
13
28
28
28
1.94
94235397--94235430
17
2.1
17
88
5
52
47
0
17
35
1.48
94239996--94240034
11
3.7
11
80
13
55
30
33
0
35
1.58
94239995--94240040
20
2.3
20
88
0
74
28
34
0
36
1.58
94241197--94241223
7
3.9
7
100
0
54
25
0
14
59
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94241839--94241881
18
2.4
18
96
0
77
13
27
11
46
1.78
94242338--94242520
55
3.2
56
69
19
162
40
4
7
47
1.51
94242266--94242532
116
2.3
115
91
2
435
40
4
7
47
1.52
94244372--94244424
26
2.0
26
100
0
106
26
26
11
35
1.90
94245575--94246121
126
4.3
126
89
2
776
27
21
17
33
1.96
94246197--94246225
15
1.9
15
100
0
58
44
34
0
20
1.52
94246395--94246436
16
2.6
17
85
11
61
54
26
0
19
1.44
94247352--94247381
15
1.9
16
93
6
53
73
16
3
6
1.18
94249850--94249942
49
1.9
48
93
2
159
23
24
8
43
1.82
94251227--94251312
43
2.0
43
93
0
145
22
24
3
50
1.65
94255018--94255116
52
1.9
52
87
0
144
25
18
25
31
1.97
94259155--94259199
22
2.1
22
84
8
58
57
6
2
33
1.37
94259287--94259403
19
6.2
20
69
12
77
64
0
2
31
1.12
94259286--94259388
18
5.6
18
72
17
68
66
0
2
30
1.13
94259286--94259389
9
11.2
9
69
16
61
66
0
2
29
1.13
94259269--94259399
10
13.4
10
71
15
71
63
0
2
33
1.12
94259291--94259404
29
4.0
28
81
12
117
64
0
2
32
1.14
94259608--94259701
38
2.5
38
81
8
95
35
3
2
59
1.25
94259671--94259727
10
5.9
10
79
4
64
40
0
0
59
0.97
94259672--94259707
9
3.9
9
88
3
54
38
0
0
61
0.96
94259676--94259765
19
4.7
19
80
13
87
37
1
1
60
1.12
94259671--94259770
29
3.5
28
71
11
78
38
1
1
60
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94259776--94259955
90
2.0
90
83
3
227
35
7
18
38
1.80
94260296--94260336
21
1.9
22
85
14
59
43
0
0
56
0.99
94261732--94261764
4
8.2
4
100
0
66
24
0
24
51
1.48
94270836--94270905
27
2.7
26
78
10
72
77
4
5
12
1.10
94275121--94275147
14
1.9
14
100
0
54
59
0
3
37
1.15
94279708--94279861
56
2.8
56
85
4
202
31
8
13
46
1.73
94279974--94280023
12
4.2
12
73
21
52
46
2
2
50
1.24
94289688--94289739
15
3.2
15
73
19
50
44
0
1
53
1.11
94289771--94289812
13
2.9
14
80
13
50
47
0
0
52
1.00
94289828--94289857
16
1.9
15
93
6
51
40
0
0
60
0.97
94289832--94289875
22
2.0
22
90
0
70
36
0
2
61
1.09
94290375--94290435
31
1.9
32
86
3
88
26
14
8
50
1.71
94296403--94296766
46
8.0
46
90
3
502
41
14
23
20
1.89
94305357--94305421
29
2.2
29
83
5
78
15
18
27
38
1.91
94312413--94312470
30
1.9
30
82
0
71
41
6
6
44
1.58
94319872--94319914
22
2.0
22
85
0
59
62
6
9
20
1.48
94319880--94319918
11
3.5
11
82
0
51
61
7
10
20
1.52
94323452--94323505
22
2.6
20
81
16
65
74
0
1
24
0.92
94325281--94325327
24
2.0
24
83
8
60
57
0
42
0
0.98
94331824--94331890
16
4.2
16
90
0
107
38
0
29
31
1.58
94331872--94331981
44
2.5
44
83
11
122
40
1
20
36
1.64
94332826--94332859
12
2.9
12
86
4
52
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94332861--94332900
18
2.2
18
86
8
55
67
12
0
20
1.22
94332983--94333045
30
2.1
30
96
0
117
57
9
4
28
1.51
94333135--94333162
14
2.0
14
100
0
56
57
0
14
28
1.38
94346214--94346344
39
3.4
39
87
3
183
23
20
29
26
1.99
94346214--94346373
78
2.1
78
82
4
189
23
20
28
27
1.99
94347894--94347918
13
1.9
13
100
0
50
60
16
16
8
1.58
94350509--94350566
25
2.3
25
91
5
91
20
31
20
27
1.98
94352880--94352919
13
3.1
13
85
7
55
40
7
30
22
1.81
94355355--94355454
47
2.1
47
81
3
112
23
17
25
35
1.95
94366038--94366124
25
3.5
25
79
4
79
21
28
20
28
1.98
94367367--94367398
16
2.0
16
93
0
55
40
0
12
46
1.42
94368224--94368334
55
2.0
54
86
5
152
46
1
0
50
1.18
94368419--94368514
44
2.1
46
84
7
126
35
25
5
34
1.78
94368496--94368546
16
3.2
16
80
0
57
27
29
3
39
1.74
94370776--94370838
30
2.1
30
96
0
117
26
3
12
57
1.51
94370922--94370961
18
2.2
18
86
8
55
20
0
12
67
1.22
94375594--94375632
20
2.0
20
89
0
60
0
35
0
64
0.94
94377428--94377479
22
2.4
21
81
12
61
23
1
0
75
0.91
94396506--94396534
15
1.9
15
100
0
58
31
13
27
27
1.94
94397995--94398100
56
1.9
56
86
0
149
25
23
24
26
2.00
94400468--94400514
21
2.2
22
92
3
78
21
38
19
21
1.94
94411406--94411448
13
3.5
13
78
18
56
34
2
16
46
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94411399--94411450
23
2.3
23
93
0
86
36
1
17
44
1.60
94418558--94418628
16
4.4
16
80
0
79
45
5
21
28
1.74
94418558--94418629
32
2.2
32
82
0
99
45
5
20
27
1.73
94418609--94418704
43
2.2
43
87
7
131
38
4
21
35
1.73
94419075--94419109
13
2.8
12
83
8
52
57
0
11
31
1.34
94423120--94423149
5
6.0
5
96
0
51
16
0
23
60
1.36
94432391--94432436
20
2.2
20
88
3
65
36
2
0
60
1.09
94433950--94434023
26
2.8
26
76
13
73
39
2
1
56
1.22
94433973--94434026
27
2.0
26
85
3
72
40
5
0
53
1.24
94440624--94440726
47
2.2
47
94
3
181
34
17
15
32
1.91
94446094--94446131
15
2.6
15
91
4
60
63
0
36
0
0.95
94447292--94447335
18
2.4
18
85
7
54
36
9
18
36
1.82
94449311--94449348
20
1.9
20
84
10
51
42
13
23
21
1.88
94451246--94451519
46
6.0
46
91
0
397
38
14
23
22
1.92
94460954--94461055
3
36.0
3
71
14
56
65
1
31
0
1.10
94460956--94461029
16
4.6
16
72
11
71
67
2
29
0
1.04
94460954--94461060
29
3.7
29
79
5
99
66
1
29
1
1.13
94460956--94461055
23
4.4
23
75
9
82
66
2
31
1
1.10
94479718--94479759
15
2.9
14
82
17
50
78
0
14
7
0.95
94492387--94492488
28
3.5
27
71
19
80
24
28
20
26
1.99
94492388--94492524
60
2.3
59
81
11
154
25
24
21
28
1.99
94492517--94492572
19
2.8
20
78
5
60
33
23
14
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94503202--94503250
25
2.0
25
87
0
71
40
0
14
44
1.45
94503645--94503730
43
2.0
43
93
0
145
48
2
25
23
1.62
94504566--94504609
17
2.6
17
85
0
61
25
27
29
18
1.98
94504741--94504838
42
2.3
43
80
1
117
17
26
35
20
1.94
94513905--94513942
11
3.5
11
85
0
58
21
2
7
68
1.28
94513906--94513953
22
2.2
22
85
7
62
25
2
8
64
1.32
94514639--94514725
6
14.3
6
71
17
56
2
26
0
71
0.98
94514642--94514723
26
3.1
27
77
10
82
2
25
0
71
0.98
94514676--94514723
25
2.0
24
88
12
71
0
25
0
75
0.81
94515523--94515863
178
1.9
177
87
3
497
32
12
29
24
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332