genome.fa.s13.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  112  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36192333--36192556	79	2.8	78	80	7	247	25	28	20	25	1.99
36192488--36192565	40	1.9	41	82	10	97	26	28	20	24	1.99
36195158--36195334	27	6.6	27	83	5	196	27	14	27	30	1.95
36203184--36203357	27	6.6	27	80	8	178	28	14	27	29	1.95
36203184--36203357	53	3.3	52	82	9	185	28	14	27	29	1.95
36211120--36211342	39	5.7	39	82	8	238	25	27	21	25	1.99
36211274--36211351	40	1.9	41	82	10	97	26	28	20	24	1.99
36227338--36227375	17	2.2	17	95	0	67	18	21	34	26	1.96
36228052--36228099	20	2.3	20	89	3	69	37	6	12	43	1.68
36228062--36228102	20	2.0	20	100	0	82	34	9	9	46	1.70
36229638--36229667	15	1.9	16	93	6	53	26	0	3	70	1.03
36230158--36230198	19	2.3	19	91	8	68	48	0	2	48	1.14
36237711--36237739	14	2.0	15	93	6	51	62	0	3	34	1.12
36240806--36240941	61	2.2	62	86	1	193	41	1	7	50	1.39
36244353--36244391	6	6.5	6	93	0	69	15	28	0	56	1.40
36246698--36246777	41	2.0	40	87	9	117	15	43	23	17	1.86
36247764--36247880	50	2.4	50	80	9	132	28	30	16	24	1.96
36247701--36248062	47	7.6	45	75	11	175	24	29	17	27	1.98
36247938--36248063	48	2.7	45	83	12	148	23	30	17	28	1.97
36248762--36248788	13	2.1	13	100	0	54	62	14	7	14	1.51
36251768--36252280	256	2.0	256	98	0	999	42	24	7	24	1.81
36269989--36270113	55	2.3	55	81	5	153	15	29	29	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36277073--36277136	32	2.0	32	96	0	119	45	15	18	20	1.86
36285370--36285423	12	4.4	13	72	11	51	66	1	1	29	1.12
36285753--36285820	28	2.4	28	82	2	73	38	14	10	36	1.81
36289581--36289611	15	2.1	15	100	0	62	25	0	0	74	0.82
36291304--36291353	16	3.5	15	74	23	54	58	6	4	32	1.41
36293241--36293304	31	2.1	31	100	0	128	35	0	20	43	1.52
36295675--36295713	18	2.2	18	95	0	69	33	10	15	41	1.81
36296418--36296496	33	2.5	33	91	6	128	50	8	1	39	1.42
36297586--36297627	20	2.1	20	100	0	84	42	4	19	33	1.72
36298284--36298405	50	2.4	50	82	5	138	40	12	13	34	1.81
36298826--36298872	24	2.0	24	82	0	58	63	4	0	31	1.13
36304092--36304192	29	3.5	29	90	1	150	29	28	14	26	1.95
36307897--36307930	13	2.9	11	84	16	50	58	23	0	17	1.38
36309429--36309754	27	12.1	27	76	9	145	30	12	18	38	1.88
36309469--36309732	27	9.9	26	83	6	291	31	10	19	38	1.86
36310072--36310133	28	2.2	28	85	0	79	25	38	16	19	1.92
36316780--36316853	29	2.6	29	89	4	105	25	16	32	25	1.96
36324892--36324965	29	2.6	29	89	4	105	25	16	32	25	1.96
36329602--36329659	30	2.0	30	83	10	75	43	10	12	34	1.76
36331944--36332013	32	2.4	27	75	20	77	27	4	18	50	1.66
36331954--36332014	32	1.9	32	93	0	104	27	4	18	49	1.68
36333421--36333466	19	2.3	20	88	7	76	47	15	13	23	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36335376--36335750	191	2.0	191	94	0	660	25	29	19	24	1.98
36340693--36340753	9	6.8	9	76	0	50	22	11	19	45	1.82
36340685--36340744	18	3.3	18	73	0	57	21	13	21	43	1.87
36340685--36340753	27	2.6	27	79	4	77	23	11	20	44	1.83
36344484--36344570	34	2.6	33	81	12	99	62	0	0	37	0.96
36344484--36344571	28	2.7	33	78	16	96	61	0	0	38	0.96
36345245--36345307	30	2.1	30	93	0	108	58	14	3	23	1.50
36345344--36345383	11	3.7	11	80	6	55	55	10	15	20	1.68
36346125--36346149	13	1.9	13	100	0	50	80	0	0	20	0.72
36346680--36346729	19	2.7	18	81	6	55	70	2	4	24	1.15
36346698--36346798	22	4.5	22	72	21	75	66	3	0	28	1.16
36346872--36346902	15	2.1	15	93	0	53	54	3	6	35	1.42
36346864--36346909	23	2.0	23	86	0	65	54	4	6	34	1.46
36347212--36347258	19	2.4	21	75	10	55	38	2	2	57	1.23
36347817--36347888	36	2.0	37	86	2	101	33	5	2	58	1.36
36352432--36352473	18	2.3	19	92	8	70	64	4	0	30	1.14
36352848--36352907	30	2.0	30	84	12	79	18	31	23	26	1.97
36355014--36355039	6	4.3	6	100	0	52	69	0	0	30	0.89
36358355--36358519	48	3.5	47	81	7	201	29	18	27	24	1.98
36364137--36364161	13	1.9	13	100	0	50	32	28	40	0	1.57
36372857--36372915	16	3.7	16	83	0	73	49	16	22	11	1.78
36372855--36372915	32	1.9	32	89	0	95	49	18	21	11	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36373131--36373242	28	4.0	28	84	2	127	26	14	31	27	1.95
36373129--36373239	56	2.0	57	83	5	145	27	14	31	27	1.95
36380692--36380862	93	1.8	93	89	2	272	28	29	20	22	1.98
36380684--36380859	46	3.8	47	77	12	193	28	28	19	22	1.98
36383227--36383313	14	6.0	15	68	18	51	56	14	18	10	1.66
36390512--36390700	50	3.8	49	81	2	207	26	18	26	28	1.98
36397455--36397669	46	4.6	48	75	4	170	31	18	25	25	1.97
36397497--36397669	94	1.8	94	86	2	249	31	17	26	24	1.97
36401146--36401202	28	2.0	28	96	0	105	29	28	14	28	1.95
36401401--36401694	43	6.8	43	89	4	396	28	29	18	23	1.97
36407724--36407787	31	2.1	31	90	0	101	25	23	14	37	1.92
36407981--36408197	25	9.0	24	89	5	282	29	22	20	27	1.98
36408004--36408197	23	8.1	23	87	7	262	29	22	20	27	1.98
36408244--36408314	20	3.5	20	90	0	115	30	21	12	35	1.91
36409556--36409633	27	2.9	27	79	11	88	21	20	21	35	1.96
36409674--36409725	27	1.9	27	92	7	88	38	11	11	38	1.78
36409757--36409942	27	6.9	27	77	11	168	31	9	18	40	1.82
36409762--36409956	81	2.4	81	88	4	279	31	8	20	39	1.83
36409935--36410091	27	5.8	27	86	0	188	39	8	22	28	1.84
36409762--36409983	81	2.8	81	85	3	225	33	9	19	37	1.83
36409935--36410118	54	3.4	54	82	0	179	37	9	23	29	1.86
36411127--36411246	43	2.8	43	85	1	170	29	26	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36416282--36416418	40	3.4	39	85	4	175	24	19	24	31	1.98
36416399--36416458	28	2.1	28	84	0	75	28	15	26	30	1.96
36418095--36418167	25	3.0	25	86	9	89	32	17	23	26	1.97
36432336--36432490	42	3.7	42	81	1	175	29	25	15	29	1.96
36434329--36434367	20	1.9	21	84	5	53	35	7	12	43	1.72
36438139--36438163	13	1.9	13	100	0	50	8	16	44	32	1.76
36444446--36444471	8	3.2	8	100	0	52	26	0	0	73	0.84
36451788--36451858	36	2.0	36	94	0	124	21	33	25	19	1.97
36454216--36454378	43	3.8	43	80	8	172	26	15	26	30	1.96
36460052--36460111	27	2.3	26	85	2	75	35	20	23	21	1.96
36460150--36460201	27	2.0	26	84	3	68	34	21	26	17	1.95
36461736--36461915	39	4.6	39	78	11	179	25	28	21	25	1.99
36461736--36461917	79	2.3	81	81	10	207	25	28	21	24	1.99
36464247--36464407	27	6.1	27	80	8	154	26	22	18	32	1.97
36464250--36464395	54	2.8	53	82	7	183	25	23	17	33	1.96
36464310--36464382	23	3.0	24	84	9	78	26	21	16	35	1.94
36470908--36470960	27	2.0	27	88	0	79	33	20	22	22	1.97
36471608--36471807	27	7.4	27	84	0	247	25	20	19	36	1.95
36476327--36476389	30	2.1	29	91	2	99	25	15	22	36	1.94
36478604--36478807	40	5.1	40	83	8	247	24	22	28	25	1.99
36478604--36478786	79	2.3	81	85	7	250	23	22	28	25	1.99
36478605--36478811	79	2.6	79	80	12	246	24	22	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36486772--36486956	40	4.7	40	83	7	234	23	22	28	25	1.99
36486772--36486954	79	2.3	81	85	7	241	23	22	28	25	1.99
36486773--36486979	79	2.6	78	80	11	199	24	21	28	25	1.99
36494387--36494438	27	2.0	26	84	3	68	34	21	26	17	1.95
36494695--36494730	8	4.5	8	100	0	72	0	36	36	27	1.57
36495106--36495249	27	5.3	27	82	3	164	25	21	18	34	1.96
36495106--36495249	54	2.7	55	83	4	186	25	21	18	34	1.96
36502670--36502886	40	5.5	40	84	6	255	24	28	23	23	1.99
36504613--36504735	47	2.6	47	84	6	144	22	32	17	27	1.96
36504613--36504877	94	2.8	93	75	11	256	23	29	19	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332