genome.fa.s13.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  163  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53826603--53826703	27	3.8	25	83	8	112	36	18	24	19	1.95
53826603--53826710	54	2.0	53	83	5	137	37	20	24	18	1.94
53827276--53827410	27	5.0	27	87	0	180	24	22	18	34	1.96
53827264--53827446	81	2.3	81	75	3	181	28	18	18	34	1.95
53828357--53828569	45	4.9	45	75	4	188	32	25	17	23	1.96
53828395--53828569	90	2.0	88	83	2	224	33	25	17	24	1.96
53829664--53829692	14	2.0	15	93	6	51	51	20	0	27	1.47
53834807--53834861	27	2.0	27	82	6	67	30	12	25	30	1.93
53842606--53842687	27	3.0	27	78	5	67	29	13	25	31	1.94
53845878--53846047	43	4.0	43	77	9	166	26	15	24	34	1.95
53854709--53854886	27	6.6	27	79	3	115	28	28	16	26	1.97
53854709--53854886	54	3.3	55	80	10	204	28	28	16	26	1.97
53854730--53854885	82	1.9	81	85	3	215	28	28	16	26	1.97
53862791--53862968	27	6.6	27	79	3	115	28	28	16	26	1.97
53862791--53862968	54	3.3	55	80	10	204	28	28	16	26	1.97
53862812--53862967	82	1.9	81	85	3	215	28	28	16	26	1.97
53865398--53865568	22	7.4	22	64	18	69	35	12	26	25	1.92
53865325--53865650	141	2.3	141	84	1	429	34	11	28	26	1.90
53865325--53865616	47	6.2	47	87	0	413	34	11	27	26	1.91
53865630--53865720	46	2.0	46	86	0	128	34	6	31	27	1.83
53867893--53868026	69	1.9	69	95	0	241	20	13	16	50	1.78
53868703--53868860	43	3.7	42	78	9	158	26	17	22	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53875663--53875775	27	4.2	28	86	3	144	35	20	24	19	1.96
53875663--53875776	55	2.1	54	85	6	151	35	20	24	19	1.95
53875862--53875924	26	2.4	26	89	7	92	26	9	26	36	1.87
53879474--53879579	27	3.9	28	82	11	132	37	19	21	20	1.94
53879476--53879581	55	1.9	54	87	9	153	37	18	22	20	1.94
53879685--53879748	26	2.4	26	89	2	74	29	10	23	35	1.89
53879999--53880035	8	4.6	8	86	0	56	10	24	13	51	1.73
53881832--53881904	34	2.1	34	87	0	101	32	27	6	32	1.83
53888987--53889097	29	3.9	29	87	9	140	23	16	35	25	1.95
53897324--53897682	93	3.9	93	91	1	549	29	28	19	22	1.98
53897371--53897632	47	5.6	47	72	15	229	29	28	19	22	1.98
53897317--53897678	46	7.8	46	71	16	255	29	28	19	22	1.98
53900709--53900905	50	4.0	49	84	3	250	28	27	18	25	1.98
53900723--53900906	101	1.8	99	89	2	287	29	27	17	25	1.98
53903304--53903366	31	2.0	31	93	0	108	38	12	15	33	1.86
53904855--53904952	34	2.9	34	84	1	135	27	21	24	26	1.99
53910130--53910354	79	2.8	78	81	10	258	24	26	22	26	2.00
53910130--53910354	119	1.9	120	81	9	282	24	26	22	26	2.00
53910130--53910354	40	5.7	39	83	8	235	24	26	22	26	2.00
53918060--53918283	40	5.6	39	85	6	240	25	27	22	25	2.00
53918060--53918284	79	2.8	78	82	7	265	25	27	22	25	2.00
53923153--53923637	47	10.1	47	93	2	781	31	8	30	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53923153--53923637	96	5.1	96	93	3	784	31	8	30	29	1.87
53923756--53923834	37	2.1	37	85	0	104	24	16	31	27	1.96
53928319--53928373	25	2.2	25	87	6	76	29	29	12	29	1.93
53928537--53928777	40	6.0	40	91	0	374	26	30	21	21	1.98
53947780--53947871	42	2.2	42	88	0	130	35	19	14	30	1.91
53948016--53948164	26	5.8	26	88	0	221	26	24	22	25	2.00
53948016--53948164	52	2.9	51	92	2	255	26	24	22	25	2.00
53948976--53949051	27	2.9	27	76	9	77	21	19	22	36	1.95
53949070--53949278	27	7.7	27	77	5	143	33	8	19	39	1.82
53949076--53949270	54	3.6	54	78	5	176	33	8	17	40	1.81
53949298--53949357	26	2.3	26	94	0	111	40	15	20	25	1.90
53949310--53949400	27	3.4	27	81	4	105	41	9	21	26	1.84
53957578--53957641	28	2.3	28	94	0	110	10	34	20	34	1.88
53958677--53958777	34	3.0	34	88	2	141	26	26	20	25	1.99
53960343--53960424	42	2.0	42	85	4	112	23	39	21	15	1.92
53960902--53960933	14	2.4	13	90	10	55	18	6	12	62	1.50
53962073--53962097	9	2.8	9	100	0	50	24	12	0	64	1.27
53967477--53967760	141	2.0	141	88	0	424	28	25	17	28	1.98
53968101--53968145	21	2.1	21	87	0	63	44	24	4	26	1.72
53975722--53975820	43	2.3	43	82	3	119	34	19	13	33	1.90
53979098--53979271	46	3.8	46	78	10	201	21	21	27	29	1.99
53979094--53979265	93	1.8	93	92	0	290	21	21	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53981625--53982154	47	11.1	47	95	2	902	32	8	30	29	1.87
53981625--53982154	143	3.7	142	94	3	906	32	8	30	29	1.87
53981625--53982154	190	2.8	190	96	1	956	32	8	30	29	1.87
53982272--53982349	36	2.1	37	90	2	122	24	19	30	25	1.98
53985426--53985603	85	2.1	84	96	1	329	37	8	28	25	1.85
53986865--53987468	49	12.6	49	94	3	893	33	8	28	29	1.87
53986865--53987468	96	6.3	97	93	2	887	33	8	28	29	1.87
53987299--53987390	47	2.2	39	83	16	105	30	10	31	27	1.91
53989872--53989950	15	5.4	15	77	10	83	10	17	13	58	1.63
53989863--53989949	29	3.0	29	81	8	95	10	17	16	56	1.67
53992328--53992501	45	3.8	45	79	13	212	21	21	28	28	1.98
53992324--53992493	92	1.8	92	93	2	297	21	21	29	27	1.99
53995999--53996165	43	3.9	43	79	3	176	32	23	14	29	1.95
54001810--54001838	13	2.2	13	100	0	58	55	13	0	31	1.39
54002363--54002431	34	2.0	34	100	0	138	43	5	20	30	1.75
54013833--54014037	27	7.6	27	83	4	216	26	15	28	29	1.96
54013834--54014037	54	3.8	54	82	5	241	26	15	28	29	1.96
54021893--54022097	27	7.6	27	83	3	223	26	15	29	29	1.96
54021894--54022097	54	3.8	54	84	3	257	25	15	29	29	1.96
54031677--54031777	45	2.2	45	91	1	157	25	26	18	28	1.98
54033003--54033148	48	3.0	48	87	0	211	30	23	8	38	1.84
54034422--54034474	27	2.0	27	85	3	72	39	20	11	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54035696--54035862	46	3.6	45	76	6	154	23	29	19	27	1.98
54040053--54040128	37	2.1	37	100	0	152	35	2	15	46	1.60
54040797--54040832	15	2.3	16	95	4	65	55	0	0	44	0.99
54043129--54043194	31	2.1	32	91	2	107	34	1	16	46	1.56
54043493--54043538	18	2.6	18	82	0	65	28	4	21	45	1.71
54045850--54046018	47	3.7	47	78	16	176	21	21	28	28	1.99
54050107--54050225	59	2.0	59	100	0	238	38	11	23	26	1.89
54054950--54055093	40	3.6	40	86	7	204	21	27	23	27	1.99
54054923--54055093	79	2.2	80	84	8	217	22	26	22	27	1.99
54062911--54063092	40	4.6	40	92	2	287	22	27	23	26	2.00
54068110--54068290	40	4.6	40	86	6	235	20	27	24	27	1.99
54068110--54068290	79	2.3	80	85	5	235	20	27	24	27	1.99
54071672--54071731	19	3.1	19	83	7	68	40	23	6	30	1.80
54079775--54079937	43	3.8	43	73	13	131	23	15	26	33	1.95
54089293--54089423	49	2.7	48	80	3	129	25	22	29	22	1.99
54095014--54095387	43	8.7	43	85	1	462	30	26	16	27	1.96
54099346--54099377	16	2.0	16	93	0	55	34	18	0	46	1.49
54099577--54099823	50	4.9	50	79	3	253	29	25	16	27	1.97
54099630--54099819	101	1.9	101	87	2	283	30	25	17	26	1.98
54100218--54100259	19	2.2	19	86	0	57	47	16	0	35	1.47
54106420--54106590	93	1.8	93	91	2	281	28	28	21	21	1.99
54106412--54106587	46	3.8	46	78	14	191	29	27	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54115106--54115144	15	2.6	15	92	8	62	51	15	17	15	1.77
54122322--54122432	27	4.3	26	76	7	100	35	22	24	18	1.96
54122360--54122432	24	2.8	26	78	10	87	32	23	27	16	1.96
54124448--54124479	16	2.0	16	93	0	55	34	18	0	46	1.49
54124679--54125019	50	6.7	50	78	4	281	31	24	17	27	1.97
54124784--54124968	51	3.6	51	81	2	185	31	24	18	25	1.98
54134370--54134429	15	4.1	14	82	8	66	53	13	18	15	1.73
54141597--54141665	27	2.6	26	79	6	75	37	17	21	23	1.94
54141627--54141684	27	2.1	27	81	12	66	32	20	25	20	1.97
54149487--54149586	27	3.7	26	79	12	96	36	17	25	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332