genome.fa.s13.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  125  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40717008--40717042	13	2.7	13	100	0	70	5	25	51	17	1.67
40724138--40724312	46	3.8	45	74	13	176	28	29	21	21	1.99
40724145--40724316	93	1.8	93	92	2	292	27	29	21	22	1.99
40724146--40724332	46	4.0	45	71	18	125	27	28	20	22	1.99
40731446--40731730	145	2.0	144	88	2	428	41	11	4	42	1.62
40732389--40732429	19	2.2	19	95	0	73	34	17	7	41	1.77
40733902--40733955	27	2.0	27	96	0	99	25	12	3	57	1.52
40733977--40734009	13	2.5	13	90	9	50	15	21	0	63	1.30
40733977--40734008	7	4.9	7	88	11	50	15	21	0	62	1.32
40735218--40735318	52	1.9	52	93	0	175	18	16	20	43	1.88
40735919--40736137	45	4.9	45	91	0	330	25	19	15	39	1.91
40735919--40736137	90	2.4	90	92	0	375	25	19	15	39	1.91
40739163--40739305	68	2.1	70	93	2	245	16	18	13	50	1.78
40739289--40739319	6	5.0	6	92	7	53	16	0	0	83	0.64
40739289--40739319	13	2.5	12	94	5	53	16	0	0	83	0.64
40739941--40740159	45	4.9	45	89	0	312	26	19	15	38	1.91
40744096--40744235	60	2.3	60	84	6	167	28	18	25	27	1.98
40747350--40747409	29	2.0	30	83	3	77	41	6	20	31	1.78
40747825--40748000	46	3.8	46	79	14	209	20	20	29	29	1.98
40747822--40747993	93	1.8	93	95	2	310	20	20	29	28	1.98
40757804--40757934	44	3.0	42	80	8	140	32	20	19	27	1.97
40765612--40765663	24	2.2	24	89	0	77	55	9	1	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40767583--40767634	24	2.2	24	89	0	77	55	9	1	32	1.43
40780116--40780271	49	3.2	49	79	4	170	46	12	11	30	1.77
40786255--40786438	29	6.4	29	79	9	182	32	29	15	21	1.95
40786255--40786468	57	3.8	57	92	0	329	31	29	16	21	1.96
40786478--40786796	40	8.0	40	90	2	482	26	27	21	24	1.99
40792902--40792941	20	2.0	20	100	0	80	40	25	10	25	1.86
40794025--40794142	44	2.8	41	77	8	119	28	26	20	24	1.99
40797407--40797470	30	2.2	29	83	13	78	10	15	1	71	1.20
40797518--40797582	34	1.9	34	84	3	87	13	24	0	61	1.32
40797508--40797558	21	2.4	22	75	12	54	9	21	0	68	1.18
40799533--40799571	21	1.9	21	89	5	62	35	12	0	51	1.40
40799531--40799583	20	2.7	19	77	11	61	33	16	0	49	1.47
40801890--40801954	32	2.0	32	96	0	121	36	6	23	33	1.80
40804580--40804658	33	2.4	33	87	4	106	20	12	44	22	1.85
40805163--40805238	24	3.3	23	70	17	68	60	2	2	34	1.24
40805167--40805242	22	3.5	21	74	13	73	59	2	2	35	1.25
40805195--40805225	16	2.0	15	93	6	53	58	6	0	35	1.24
40805791--40805819	12	2.5	12	94	5	51	55	0	0	44	0.99
40808579--40808770	42	4.5	42	82	2	215	30	16	23	28	1.96
40817182--40817303	43	2.9	43	83	3	140	29	29	18	22	1.97
40822501--40822534	11	3.0	11	83	8	50	76	2	2	17	1.04
40835439--40835638	99	2.0	101	98	1	386	17	33	23	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40843818--40843852	13	2.7	13	95	0	61	62	5	0	31	1.18
40844062--40844114	21	2.7	20	80	8	54	39	16	22	20	1.92
40844076--40844121	20	2.2	21	88	3	67	32	19	26	21	1.97
40845427--40845463	19	2.1	19	90	10	60	27	5	5	62	1.39
40854122--40854159	3	12.7	3	100	0	76	0	31	0	68	0.90
40867214--40867267	19	2.8	19	81	15	67	68	5	1	24	1.21
40868428--40868496	35	2.0	35	100	0	138	55	8	2	33	1.46
40872811--40872857	19	2.3	20	82	10	60	36	0	14	48	1.44
40873206--40873447	50	4.8	50	77	6	229	25	18	24	30	1.98
40873207--40873388	101	1.8	101	88	0	283	24	19	25	31	1.98
40873996--40874329	180	1.9	180	82	3	422	40	7	17	34	1.78
40876758--40876794	16	2.2	17	90	4	58	0	24	0	75	0.80
40876872--40876921	5	10.0	5	87	8	75	62	0	2	36	1.07
40876886--40876972	15	5.8	15	75	12	65	51	1	3	43	1.26
40885669--40885785	27	4.3	27	86	2	137	21	20	18	39	1.93
40885777--40885904	27	4.7	27	89	2	186	39	13	14	33	1.84
40890743--40890774	6	5.3	6	92	0	55	0	50	0	50	1.00
40891584--40891617	13	2.6	13	90	0	50	41	2	11	44	1.56
40892213--40892238	3	8.7	3	100	0	52	69	0	0	30	0.89
40893483--40893700	27	8.1	27	81	0	229	25	19	17	37	1.94
40893470--40893582	54	2.1	54	80	3	120	26	20	21	31	1.98
40893485--40893703	54	4.1	54	85	1	253	25	19	17	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40893499--40893695	81	2.4	81	87	0	277	24	19	18	37	1.94
40893688--40893787	27	3.7	27	87	1	148	29	9	20	42	1.82
40893687--40893812	54	2.4	54	85	5	166	27	8	21	42	1.82
40893687--40893972	27	10.6	27	79	3	141	32	8	22	36	1.85
40893803--40893931	54	2.4	54	93	0	213	38	9	22	29	1.85
40893792--40893974	81	2.3	81	77	1	197	33	8	24	33	1.86
40901422--40901477	28	2.0	28	96	0	103	30	26	7	35	1.83
40905283--40905321	19	2.1	19	85	9	53	58	23	0	17	1.38
40905457--40905555	49	2.0	49	96	0	180	38	22	12	27	1.89
40905764--40906020	40	6.4	40	85	2	338	45	27	13	13	1.80
40906992--40907037	23	2.0	23	100	0	92	47	0	0	52	1.00
40908431--40908478	21	2.2	21	81	3	60	18	10	12	58	1.62
40920437--40920504	32	2.1	32	86	0	91	30	11	8	48	1.70
40927825--40927890	23	3.2	23	60	28	56	34	4	22	37	1.75
40927816--40927894	39	2.0	39	100	0	158	36	5	20	37	1.75
40934427--40934548	47	2.6	48	89	1	183	22	16	29	31	1.96
40940631--40940671	14	2.9	14	77	0	55	36	31	9	21	1.86
40944150--40944370	80	2.8	80	80	7	202	27	27	20	24	1.99
40944190--40944370	80	2.3	80	83	9	219	27	27	20	23	1.99
40944187--40944370	40	4.6	40	81	7	196	28	27	20	23	1.99
40952045--40952265	80	2.8	80	80	7	202	27	27	20	24	1.99
40952085--40952265	80	2.3	80	83	9	219	27	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40952082--40952265	40	4.6	40	81	7	196	28	27	20	23	1.99
40953886--40954297	205	2.0	205	94	0	725	23	29	20	26	1.99
40962955--40962979	13	1.9	13	100	0	50	64	8	4	24	1.38
40972012--40972182	46	3.7	47	77	6	177	30	20	26	21	1.98
40979531--40979659	47	2.7	47	79	14	158	28	17	29	24	1.97
40988435--40988517	42	2.0	42	90	0	130	48	15	6	30	1.69
40988550--40988587	19	2.1	18	90	5	58	47	15	2	34	1.60
40989125--40989156	16	2.0	16	100	0	64	50	31	6	12	1.65
40990492--40990605	29	4.0	28	82	3	113	28	15	27	28	1.96
40994874--40994988	29	4.0	29	81	2	117	27	13	28	29	1.95
40994887--40994997	58	1.9	58	85	1	152	27	14	29	28	1.95
41004062--41004099	19	2.0	20	85	15	53	39	23	0	36	1.55
41005330--41005406	33	2.4	33	93	6	131	32	20	22	24	1.98
41011867--41012037	93	1.8	93	93	0	297	28	28	21	21	1.98
41011862--41012034	46	3.7	46	79	10	208	29	27	20	21	1.98
41025597--41025656	29	2.1	28	84	3	75	45	25	11	18	1.83
41026698--41026850	78	2.0	78	89	0	234	28	19	13	37	1.90
41042733--41042793	30	2.0	30	83	0	77	31	22	6	39	1.80
41049302--41049473	93	1.8	93	89	0	272	28	28	21	21	1.99
41049294--41049464	46	3.7	46	75	13	179	29	28	21	21	1.98
41055709--41055752	23	1.9	23	90	0	70	61	4	2	31	1.28
41055713--41055755	11	3.8	11	80	17	52	65	2	2	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41059841--41060000	27	5.9	27	85	0	212	26	21	19	33	1.97
41059842--41060008	54	3.1	54	87	0	237	27	20	17	33	1.96
41060004--41060387	27	14.3	27	80	7	185	30	8	21	39	1.84
41060075--41060392	27	11.9	27	83	4	356	31	9	20	38	1.85
41060028--41060398	54	6.9	54	79	7	342	30	8	21	39	1.84
41060028--41060394	81	4.5	81	81	3	418	30	8	21	39	1.84
41060895--41060928	17	2.0	17	100	0	68	35	11	29	23	1.90
41065271--41065403	69	1.9	70	90	1	214	32	14	16	36	1.89
41066791--41067099	47	6.6	47	92	0	492	33	8	28	28	1.87
41071034--41071233	43	4.7	43	94	0	346	12	24	33	30	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332