genome.fa.s13.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  209  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69369278--69369302	4	6.2	4	100	0	50	52	0	0	48	1.00
69369395--69369434	21	1.9	21	89	0	62	57	2	2	37	1.26
69373352--69373386	16	2.2	16	89	0	52	20	8	11	60	1.57
69374442--69375935	498	3.0	498	98	0	2900	37	17	14	30	1.90
69377453--69377635	46	4.0	46	93	0	285	24	31	9	34	1.87
69377609--69377893	47	6.1	47	92	1	412	25	29	10	34	1.89
69377721--69377798	25	3.2	25	64	29	69	29	29	10	30	1.90
69377699--69377773	22	3.3	22	64	29	57	25	30	13	30	1.94
69383067--69383106	19	2.1	19	90	0	62	40	12	12	35	1.81
69389822--69389907	31	2.8	31	91	1	147	23	26	18	31	1.97
69392602--69392639	17	2.2	18	85	4	51	63	2	23	10	1.39
69392621--69392675	12	4.6	12	73	15	51	63	0	23	12	1.29
69397309--69397344	16	2.2	16	90	0	54	22	41	11	25	1.86
69403214--69403334	44	2.8	45	75	14	119	27	26	19	27	1.99
69408308--69408380	36	2.0	36	97	0	137	23	21	6	47	1.74
69424968--69424998	12	2.6	12	89	0	53	25	38	25	9	1.86
69429664--69429696	18	1.9	17	88	11	50	24	33	6	36	1.80
69429691--69429743	19	2.8	19	83	11	74	15	30	7	47	1.73
69433028--69433348	48	6.7	48	73	7	258	24	28	19	28	1.98
69433032--69433356	144	2.3	143	85	3	411	24	28	19	28	1.98
69435622--69435713	30	3.1	30	80	0	112	25	35	17	21	1.95
69437798--69437965	27	6.3	27	84	4	214	35	17	20	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69437798--69437965	80	2.1	81	89	3	259	35	17	20	25	1.95
69438315--69438390	33	2.3	33	86	2	98	26	23	25	25	2.00
69446374--69446485	42	2.6	42	76	14	122	23	17	30	28	1.97
69451626--69451843	40	5.5	40	92	2	282	22	22	28	26	1.99
69453429--69453623	70	2.8	70	96	0	356	32	13	16	36	1.88
69455095--69455515	47	9.0	47	88	0	608	31	11	29	27	1.92
69455216--69455291	23	3.2	25	62	24	63	28	13	34	23	1.92
69455405--69455479	23	3.1	25	63	24	61	29	13	33	24	1.93
69455678--69455826	37	4.0	37	91	0	226	22	20	32	25	1.98
69472533--69472568	18	2.0	18	88	0	54	11	16	22	50	1.77
69472983--69473007	13	1.9	13	100	0	50	0	48	28	24	1.52
69480186--69480265	41	1.9	41	87	5	115	38	27	15	18	1.91
69484859--69484965	48	2.2	48	88	0	151	26	20	24	28	1.99
69486366--69486398	10	3.2	11	87	12	52	24	9	9	57	1.58
69488075--69488293	43	5.1	43	83	4	282	31	26	16	25	1.97
69488075--69488293	84	2.6	84	85	4	289	31	26	16	25	1.97
69494527--69494615	15	5.8	16	71	14	62	60	1	4	33	1.24
69494461--69494596	22	6.4	22	69	24	69	58	1	5	35	1.30
69496384--69496632	130	1.9	130	89	3	385	30	24	14	30	1.95
69509252--69509317	34	1.9	34	93	0	114	22	43	24	9	1.82
69510636--69510791	54	2.9	54	82	6	183	24	24	16	34	1.95
69510803--69510876	36	2.1	36	94	0	130	29	22	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69517641--69517744	29	3.7	29	81	7	124	28	15	27	27	1.96
69520652--69520683	16	2.0	16	93	0	55	50	28	6	15	1.68
69521946--69521988	8	5.4	8	81	8	52	53	23	18	4	1.63
69521946--69521988	16	2.7	16	92	0	68	53	23	18	4	1.63
69522212--69522313	29	3.6	29	83	1	116	25	15	30	28	1.96
69524894--69525215	54	6.0	54	87	1	376	24	24	14	36	1.93
69525188--69525396	47	4.4	47	91	0	328	26	25	14	33	1.94
69525457--69525617	45	3.5	44	77	10	180	21	26	19	32	1.97
69525428--69525574	47	3.2	46	74	11	156	23	23	19	32	1.98
69525428--69525632	92	2.2	92	89	4	306	22	24	20	32	1.97
69525780--69525806	12	2.2	12	100	0	54	66	7	0	25	1.17
69527272--69527339	32	2.1	33	94	2	120	35	19	4	41	1.71
69531912--69532232	53	6.0	54	83	3	333	24	23	15	36	1.93
69531912--69532220	162	1.9	160	80	4	352	24	22	15	36	1.94
69531931--69532232	107	2.8	109	83	4	337	25	22	15	36	1.93
69532220--69532326	47	2.3	47	91	0	178	25	24	13	37	1.91
69532380--69532494	44	2.6	44	95	1	203	20	26	19	33	1.96
69532251--69532497	47	5.4	44	78	8	224	21	24	19	34	1.96
69536441--69536536	42	2.3	42	87	3	131	32	10	22	34	1.88
69536456--69536551	42	2.3	42	92	0	156	32	10	22	34	1.88
69536456--69536573	42	2.8	41	85	2	146	32	11	22	33	1.89
69538028--69538109	6	13.3	6	70	19	53	50	14	18	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69538055--69538106	19	2.7	19	93	0	86	46	17	23	13	1.83
69538439--69538503	22	3.0	22	82	8	87	30	21	24	23	1.99
69538889--69538952	27	2.4	28	73	7	69	37	23	18	20	1.94
69538936--69539282	27	12.9	27	84	0	408	24	20	17	37	1.94
69539274--69539771	27	18.6	27	78	6	415	31	9	19	38	1.85
69539321--69539771	53	8.5	53	82	5	509	31	9	19	39	1.85
69539321--69539771	80	5.6	80	81	6	477	31	9	19	39	1.85
69542857--69542904	20	2.4	21	76	20	57	43	0	2	54	1.12
69543656--69543750	37	2.5	38	84	6	122	12	10	40	36	1.78
69544835--69544886	11	4.7	11	76	6	52	21	3	1	73	1.10
69544834--69544904	28	2.7	27	79	12	67	23	4	1	70	1.13
69548380--69548440	27	2.3	27	78	13	72	62	0	6	31	1.21
69566611--69566738	46	2.7	47	81	8	138	31	26	19	22	1.98
69575602--69575749	48	3.1	48	92	0	233	27	20	24	28	1.99
69580385--69580418	16	2.1	17	88	5	52	55	8	11	23	1.63
69580953--69581000	20	2.5	19	77	12	53	70	6	0	22	1.09
69580949--69580998	22	2.3	21	80	16	57	70	8	0	22	1.13
69581098--69581134	17	2.1	18	90	5	58	59	0	8	32	1.27
69581208--69581237	15	1.9	16	93	6	53	56	0	0	43	0.99
69583068--69583417	83	4.2	83	92	1	567	29	20	18	32	1.96
69583355--69583627	119	2.3	120	91	1	442	30	18	16	34	1.94
69595620--69595666	19	2.5	18	77	16	51	70	6	0	23	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69595629--69595683	25	2.2	24	80	3	56	70	3	1	23	1.12
69595761--69595797	17	2.1	18	90	5	58	59	0	8	32	1.27
69595807--69595858	20	2.5	22	73	23	58	57	0	5	36	1.23
69616050--69616173	39	2.9	41	88	10	171	33	13	25	27	1.94
69616090--69616196	47	2.3	47	93	0	178	33	13	27	26	1.93
69616186--69616392	53	3.9	53	83	7	226	37	16	25	21	1.93
69620173--69620275	29	3.6	29	73	10	93	29	30	17	23	1.97
69620156--69620306	58	2.6	58	90	1	223	29	26	19	23	1.98
69620205--69620304	29	3.4	29	73	10	105	31	25	21	23	1.98
69620461--69620854	43	9.2	43	90	0	574	31	31	23	13	1.93
69622251--69622323	35	2.1	35	100	0	146	39	19	5	35	1.75
69631767--69631799	13	2.6	13	90	4	50	39	0	12	48	1.40
69640401--69640624	122	1.9	120	86	1	322	40	10	19	29	1.85
69645775--69645861	45	1.9	45	88	0	129	40	22	10	26	1.86
69657531--69657589	27	2.2	26	85	5	82	35	20	22	22	1.96
69657725--69657841	27	4.4	27	76	6	112	28	22	15	34	1.94
69657710--69657841	53	2.5	54	87	1	176	29	21	15	33	1.94
69665109--69665433	48	6.7	48	78	9	322	24	26	20	28	1.99
69665109--69665436	96	3.4	94	83	6	390	24	26	20	28	1.99
69676379--69676477	28	3.5	28	87	4	119	27	15	27	30	1.96
69689141--69689225	43	2.0	42	90	2	134	38	11	16	32	1.85
69689669--69689816	43	3.5	43	76	9	142	26	19	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69689666--69689824	85	1.9	85	83	7	207	25	19	25	29	1.98
69692445--69692613	40	4.2	39	80	4	167	33	23	20	23	1.97
69693389--69693417	14	2.1	14	100	0	58	20	0	31	48	1.50
69693536--69693582	14	3.4	14	87	0	67	12	0	34	53	1.39
69696849--69697034	49	3.8	48	82	7	212	29	26	18	25	1.98
69696858--69697046	100	1.9	98	84	4	254	29	28	17	24	1.97
69705045--69705186	67	2.1	67	82	7	169	30	21	28	19	1.98
69706712--69706745	18	1.9	18	88	5	52	50	2	2	44	1.32
69710742--69710977	43	5.5	43	82	3	188	23	13	30	32	1.94
69710800--69710982	43	4.3	43	85	1	224	22	14	31	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332