genome.fa.s13.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  210  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69720375--69720418	22	2.0	22	82	8	54	38	13	18	29	1.89
69720645--69720746	40	2.6	40	84	7	129	27	26	22	23	2.00
69722757--69723018	48	5.4	49	73	14	220	23	25	20	30	1.98
69722791--69723057	48	5.6	48	74	13	203	25	25	19	28	1.99
69722757--69723071	96	3.3	99	81	10	357	24	25	20	30	1.98
69723170--69723209	19	2.0	19	85	9	53	50	10	5	35	1.58
69729076--69729101	13	2.0	13	100	0	52	30	0	7	61	1.24
69730459--69730640	40	4.6	40	93	2	296	23	23	26	26	2.00
69737126--69737151	13	2.0	13	100	0	52	30	0	7	61	1.24
69738508--69738687	39	4.6	40	93	2	287	23	21	27	27	1.99
69738508--69738687	79	2.3	80	91	4	287	23	21	27	27	1.99
69743170--69743220	26	2.0	26	84	7	68	62	1	9	25	1.36
69749218--69749389	94	1.8	92	82	7	222	23	29	18	28	1.98
69756072--69756296	40	5.6	40	84	6	294	24	22	28	25	1.99
69756072--69756296	83	2.8	79	83	7	308	24	22	28	25	1.99
69760013--69760233	47	4.7	47	78	8	218	25	28	17	27	1.98
69760208--69760378	46	3.7	46	78	6	166	26	26	16	29	1.97
69760208--69760378	94	1.8	92	82	7	220	26	26	16	29	1.97
69764194--69764252	23	2.6	23	80	0	64	38	11	18	30	1.87
69781526--69781621	25	3.8	25	91	2	156	26	23	23	26	2.00
69781526--69781621	51	1.9	50	93	2	165	26	23	23	26	2.00
69781669--69781717	11	4.7	11	80	12	59	32	18	12	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69783267--69783458	40	4.8	40	90	1	217	26	27	21	24	1.99
69783247--69783457	80	2.7	80	82	5	239	27	27	20	23	1.99
69788012--69788057	21	2.2	21	84	0	56	63	0	26	10	1.27
69790627--69790681	27	2.0	27	96	0	101	40	9	25	25	1.85
69797804--69798009	46	4.5	45	77	4	146	20	18	13	48	1.81
69797854--69798009	46	3.4	45	79	6	172	19	17	13	48	1.80
69797983--69798095	45	2.5	45	81	8	140	21	20	19	38	1.93
69805902--69805928	5	5.4	5	100	0	54	0	18	0	81	0.69
69805902--69805951	10	5.2	10	83	9	59	8	12	0	80	0.92
69805916--69805959	18	2.4	18	88	0	61	13	6	0	79	0.92
69811680--69811732	7	7.6	7	82	0	52	43	33	1	20	1.63
69811684--69811723	21	1.9	21	94	0	71	47	27	0	25	1.52
69814261--69814317	27	2.1	27	93	0	96	33	24	22	19	1.97
69817119--69817143	13	1.9	13	100	0	50	32	12	24	32	1.91
69817120--69817181	26	2.4	26	78	5	72	37	9	19	33	1.84
69817473--69817527	12	4.8	12	72	19	55	41	0	1	56	1.10
69817444--69817495	21	2.5	22	76	20	65	48	1	0	50	1.12
69822674--69822842	47	3.6	47	92	0	266	35	13	23	27	1.93
69822821--69822967	54	2.7	56	84	3	192	34	17	25	23	1.95
69822829--69822967	55	2.6	54	83	3	172	33	17	25	23	1.96
69833512--69833689	27	6.6	27	80	5	162	28	28	16	26	1.97
69833533--69833688	82	1.9	81	85	3	215	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69841395--69841572	27	6.6	27	78	3	115	28	28	16	26	1.97
69841395--69841572	54	3.3	55	80	10	204	28	28	16	26	1.97
69845079--69845233	43	3.6	43	82	1	177	26	13	25	34	1.93
69849486--69849531	24	1.9	24	86	0	65	54	13	17	15	1.71
69849747--69849842	29	3.4	28	74	7	86	27	15	28	29	1.96
69851226--69851282	29	2.0	29	100	0	114	42	17	0	40	1.49
69865427--69865721	48	6.1	48	93	1	518	35	5	26	31	1.80
69865430--69865718	98	3.0	98	94	1	510	35	5	26	31	1.81
69865427--69865721	146	2.0	144	94	1	518	35	5	26	31	1.80
69865427--69865760	146	2.3	145	88	4	471	34	6	27	31	1.82
69870884--69871041	43	3.7	43	81	5	185	29	15	24	31	1.95
69870884--69871041	86	1.8	86	83	5	212	29	15	24	31	1.95
69874318--69874360	21	2.0	21	95	0	77	18	25	6	48	1.73
69876313--69876354	22	2.1	19	86	13	57	45	2	0	52	1.13
69878780--69878929	67	2.2	67	81	8	171	32	17	28	21	1.96
69878804--69878987	67	2.8	64	77	8	194	29	17	29	22	1.97
69883201--69883350	67	2.2	67	81	8	171	32	17	28	21	1.96
69883225--69883408	67	2.8	64	77	8	194	29	17	29	22	1.97
69885828--69885858	15	2.1	15	100	0	62	32	0	12	54	1.38
69890002--69890077	40	1.9	40	86	5	109	28	26	15	28	1.96
69891153--69891191	20	2.0	20	89	0	60	15	25	33	25	1.95
69891158--69891197	20	2.0	20	85	0	53	15	27	32	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69893470--69893568	28	3.5	28	87	4	119	27	15	27	30	1.96
69908371--69908541	93	1.8	93	92	2	290	29	28	20	21	1.98
69908366--69908538	46	3.7	46	78	14	194	30	27	20	21	1.98
69917528--69917554	13	2.1	13	100	0	54	48	22	0	29	1.51
69924499--69924550	22	2.5	19	76	14	50	40	15	7	36	1.76
69926759--69926810	27	2.0	26	84	3	68	17	26	21	34	1.95
69930837--69930894	30	2.0	29	96	3	107	34	24	15	25	1.95
69938060--69938119	29	2.1	29	84	6	77	35	21	16	26	1.95
69964672--69964755	31	2.7	31	94	1	143	27	26	17	28	1.98
69964769--69964885	58	2.0	58	100	0	234	27	23	18	29	1.98
69964837--69964928	42	2.2	42	92	0	148	34	21	14	29	1.93
69965076--69965273	26	7.7	26	85	0	265	27	22	22	27	1.99
69965076--69965273	52	3.8	52	90	1	319	27	22	22	27	1.99
69966076--69966158	27	3.1	27	84	5	107	19	24	24	32	1.97
69966210--69966262	27	2.0	27	84	0	70	35	13	15	35	1.86
69966219--69966448	27	8.5	27	76	8	99	30	7	20	41	1.80
69966310--69966448	53	2.6	54	81	1	154	28	6	22	42	1.78
69966219--69966448	54	4.2	52	71	13	142	30	7	20	41	1.80
69966310--69966543	27	8.7	27	81	2	184	32	7	21	38	1.82
69973056--69973082	4	6.8	4	100	0	54	22	0	0	77	0.76
69973462--69973646	78	2.3	80	86	6	245	32	15	13	38	1.87
69973584--69973709	63	2.0	62	87	1	180	31	11	11	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69973684--69973991	86	3.6	85	79	7	270	33	9	12	44	1.74
69978747--69978881	47	2.8	49	80	5	159	23	31	17	27	1.97
69979413--69979457	23	2.0	23	100	0	90	20	13	17	48	1.80
69981249--69981290	20	2.1	20	86	8	59	26	11	9	52	1.68
69985509--69985920	68	6.2	64	70	16	182	25	28	16	30	1.96
69985601--69985995	198	2.0	198	96	0	736	26	28	15	29	1.96
69990677--69990793	44	2.7	44	84	4	130	34	23	16	25	1.95
69997141--69997207	30	2.2	29	78	7	71	49	1	1	47	1.19
69997376--69997430	13	4.2	13	80	0	65	34	18	9	38	1.82
70008116--70008173	21	2.5	24	75	13	68	25	22	17	34	1.96
70008293--70008552	130	2.0	130	92	0	430	35	15	14	35	1.88
70010524--70010696	46	3.7	46	73	14	133	23	18	28	30	1.98
70015480--70015506	12	2.2	12	100	0	54	22	33	25	18	1.97
70015492--70015797	47	6.4	49	70	14	151	26	28	16	28	1.97
70015587--70015737	47	3.2	47	74	17	177	26	29	15	28	1.96
70015580--70015800	94	2.3	94	96	0	397	26	27	15	29	1.96
70016243--70016281	19	2.1	19	85	9	53	30	15	2	51	1.57
70020622--70020646	13	1.9	13	100	0	50	8	32	36	24	1.84
70023368--70023444	38	2.0	38	97	0	145	44	19	10	25	1.83
70025822--70025907	43	2.0	43	93	0	145	46	22	10	20	1.81
70028785--70029061	27	10.3	26	79	6	200	40	18	7	33	1.80
70029310--70029429	41	2.9	41	82	2	125	23	21	30	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70029571--70029635	22	3.0	22	80	8	78	20	23	23	33	1.97
70029779--70029861	25	3.3	25	82	1	85	18	14	26	40	1.88
70032681--70032768	27	3.3	27	90	0	140	40	21	7	29	1.82
70032647--70032771	54	2.3	54	83	4	146	37	21	12	28	1.89
70032681--70032873	54	3.6	54	80	2	201	42	18	8	30	1.80
70032697--70032847	53	2.8	53	82	6	171	43	19	7	29	1.77
70032697--70032891	27	7.3	27	81	6	159	43	18	7	30	1.78
70032725--70032873	80	1.9	80	83	5	194	43	18	8	30	1.78
70032698--70032891	107	1.8	107	83	4	257	42	19	7	30	1.79
70032814--70032901	27	3.3	27	81	7	81	43	19	9	28	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332