Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  130  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42326404--42326757
48
7.6
48
90
7
570
35
8
26
29
1.85
42326596--42326757
85
1.9
84
97
1
306
35
8
26
30
1.85
42326644--42326725
37
2.2
37
97
0
155
35
8
25
30
1.86
42326669--42326783
48
2.4
46
75
11
124
33
8
27
30
1.87
42326930--42327032
37
2.8
37
87
0
161
24
20
29
26
1.99
42330199--42330232
12
2.9
12
86
4
52
32
0
0
67
0.91
42330456--42330505
22
2.3
22
83
13
59
58
6
18
18
1.59
42353684--42353773
33
2.7
33
81
3
101
26
23
23
26
2.00
42355870--42355991
47
2.6
47
89
2
183
36
13
22
26
1.92
42355976--42356187
54
3.9
54
76
7
187
36
16
25
22
1.94
42355979--42356166
55
3.5
52
81
6
180
34
17
25
22
1.95
42355979--42356201
108
2.1
108
83
5
272
36
15
25
22
1.94
42372410--42372637
48
4.9
48
73
9
191
29
24
18
27
1.98
42377593--42377690
28
3.5
28
94
1
162
26
13
28
31
1.94
42377593--42377703
28
4.0
27
89
3
143
28
12
26
32
1.93
42384518--42384635
27
4.4
26
73
11
87
38
17
17
26
1.92
42385165--42385207
21
2.0
21
100
0
86
51
0
30
18
1.47
42402472--42402641
48
3.5
47
83
7
207
28
21
26
24
1.99
42407686--42407812
48
2.6
48
88
1
182
30
21
24
23
1.99
42413131--42413248
40
3.0
40
94
0
200
31
28
17
22
1.97
42419237--42419296
30
2.0
30
86
0
84
40
6
25
28
1.80
42430398--42430423
11
2.4
11
100
0
52
30
26
19
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42430470--42430510
15
2.7
15
80
0
55
56
9
19
14
1.66
42432323--42432544
39
5.6
39
93
1
363
23
22
27
26
2.00
42432279--42432567
118
2.4
120
84
5
401
24
22
26
26
2.00
42440488--42440708
39
5.6
39
93
1
352
23
23
26
26
2.00
42440443--42440731
118
2.4
119
81
5
370
25
21
26
26
2.00
42446810--42446869
29
2.1
29
93
0
102
21
31
11
35
1.90
42451036--42451105
28
2.5
28
90
4
106
27
12
27
32
1.93
42458092--42458220
29
4.4
29
74
8
109
37
10
27
25
1.88
42458150--42458282
30
4.4
31
79
10
143
42
12
24
21
1.87
42458147--42458282
60
2.3
59
84
8
177
41
11
24
22
1.87
42459580--42459727
42
3.5
42
81
8
149
25
16
26
31
1.97
42459580--42459727
43
3.4
43
80
6
158
25
16
26
31
1.97
42467926--42467989
31
2.1
31
93
0
110
34
12
23
29
1.92
42469436--42469580
27
5.4
27
85
0
164
36
17
21
24
1.94
42469953--42470033
33
2.5
33
84
8
94
22
22
25
29
1.99
42490089--42490129
6
6.5
6
89
10
64
80
2
0
17
0.82
42490066--42490123
20
2.6
22
81
15
66
72
3
0
24
1.00
42490089--42490130
20
2.1
20
90
0
66
80
2
0
16
0.81
42490149--42490225
9
8.6
9
80
11
77
29
9
18
42
1.81
42490149--42490226
27
2.9
27
79
7
95
29
8
17
43
1.80
42490511--42490609
42
2.3
43
84
5
121
24
17
25
33
1.96
42491360--42491428
9
7.7
9
75
6
68
33
21
11
33
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42491353--42491431
18
4.4
18
95
0
140
31
22
11
34
1.90
42495767--42495984
40
5.5
40
90
2
298
22
23
27
25
2.00
42503884--42504046
40
4.1
40
85
6
188
22
23
27
26
2.00
42524856--42524889
16
2.0
17
88
11
52
52
5
0
41
1.25
42525552--42525617
20
3.3
20
89
0
96
9
28
42
19
1.82
42526756--42526910
42
3.7
42
76
5
143
29
25
15
29
1.96
42530069--42530129
24
2.5
24
100
0
122
34
14
14
36
1.87
42531520--42531610
45
2.0
45
100
0
182
35
21
13
29
1.92
42533069--42533216
42
3.5
42
81
2
154
28
22
16
32
1.96
42547584--42547660
20
4.0
20
80
8
97
41
22
5
31
1.75
42552936--42553007
27
2.7
27
75
0
72
36
19
22
22
1.95
42553153--42553301
27
5.5
27
81
3
183
25
20
20
32
1.97
42555556--42555612
30
1.9
30
85
0
78
26
22
10
40
1.86
42556336--42556360
13
1.9
13
100
0
50
68
0
0
32
0.90
42559547--42559581
17
2.1
17
89
10
54
11
28
14
45
1.79
42561879--42562016
40
3.5
40
85
5
149
25
28
20
26
1.99
42561995--42562072
40
1.9
41
82
10
97
26
28
20
24
1.99
42569748--42569972
40
5.7
40
81
6
224
24
28
21
25
1.99
42569715--42569972
40
6.5
38
78
9
200
24
27
21
26
1.99
42569904--42569981
40
1.9
41
82
10
97
26
28
20
24
1.99
42576281--42576463
79
2.3
81
84
7
232
24
22
27
25
2.00
42576282--42576465
40
4.6
40
83
9
216
23
22
28
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42576334--42576498
79
2.1
79
84
6
210
25
21
27
25
1.99
42584327--42584507
40
4.5
39
81
5
168
24
23
27
24
2.00
42584376--42584540
79
2.1
79
82
6
192
26
22
26
24
2.00
42595268--42595311
23
1.9
23
85
0
61
31
18
25
25
1.97
42598812--42598887
31
2.5
31
84
0
80
53
14
14
17
1.72
42598849--42599072
25
8.7
25
77
7
225
46
14
19
19
1.83
42598833--42598949
31
4.0
31
79
13
147
47
15
17
18
1.82
42598834--42599072
56
4.5
56
82
12
322
46
14
19
19
1.83
42598874--42598967
31
3.2
30
71
17
99
46
15
18
19
1.84
42598852--42599072
50
4.3
50
87
5
291
47
14
19
19
1.83
42599189--42599297
27
4.1
26
84
5
128
38
21
22
18
1.93
42599864--42599934
27
2.6
27
88
0
106
25
26
18
29
1.98
42599866--42599952
27
3.2
27
85
1
84
25
22
18
33
1.97
42602221--42602245
10
2.5
10
100
0
50
8
32
52
8
1.60
42602448--42602517
26
2.6
27
79
4
79
37
21
8
32
1.84
42602457--42602552
27
3.6
26
80
6
95
39
20
8
31
1.82
42602478--42602626
54
2.8
53
76
13
151
40
18
8
31
1.81
42602508--42602570
27
2.3
27
83
5
74
44
17
6
31
1.74
42602603--42602985
27
14.2
27
86
0
433
30
21
7
39
1.81
42602603--42602985
54
7.1
54
86
0
478
30
21
7
39
1.81
42603245--42603302
27
2.2
26
84
3
71
22
24
18
34
1.96
42605372--42605485
27
4.3
26
75
9
88
38
20
7
33
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42605396--42605502
27
3.9
28
79
7
114
37
23
7
31
1.83
42605372--42605497
54
2.4
54
81
9
134
38
22
7
31
1.83
42605450--42605539
27
3.3
27
78
3
83
36
25
6
31
1.82
42605491--42605871
27
14.2
27
84
4
421
31
21
5
40
1.77
42605491--42605871
81
4.7
81
86
1
482
31
21
5
40
1.77
42611588--42612045
47
9.7
47
97
1
830
31
8
29
30
1.87
42611588--42612045
140
3.2
141
96
2
830
31
8
29
30
1.87
42611588--42612045
187
2.4
189
95
2
832
31
8
29
30
1.87
42612163--42612240
37
2.1
36
88
2
111
24
19
30
25
1.98
42622030--42622132
51
2.0
51
100
0
206
20
17
19
42
1.89
42622758--42622931
46
3.8
45
76
13
183
29
29
19
21
1.97
42622765--42622935
93
1.8
93
92
0
288
29
29
19
21
1.98
42627522--42627898
50
7.5
51
75
9
312
30
25
17
25
1.97
42627521--42627898
151
2.5
150
88
3
546
30
25
17
25
1.97
42636898--42637003
30
3.6
29
73
10
97
19
18
23
37
1.94
42639187--42639242
27
2.1
26
90
9
87
33
8
17
39
1.81
42639805--42639851
21
2.1
22
84
11
60
44
17
19
19
1.87
42640497--42640540
12
3.8
11
85
8
61
79
6
2
11
1.01
42640510--42640539
11
2.7
11
100
0
60
80
6
0
13
0.91
42641163--42641202
21
1.9
20
85
10
53
22
22
20
35
1.96
42641771--42641826
27
2.1
26
90
9
87
39
17
8
33
1.81
42641784--42641841
27
2.1
27
84
6
73
41
18
10
29
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42648933--42648994
28
2.3
27
82
2
79
16
16
3
64
1.42
42648943--42649002
28
2.1
28
81
0
66
13
18
3
65
1.40
42650876--42651011
42
3.2
42
77
0
146
31
14
25
28
1.95
42650896--42651027
42
3.1
42
77
0
147
30
17
25
26
1.97
42654249--42654315
29
2.3
29
86
0
98
35
17
16
29
1.92
42654267--42654365
29
3.5
29
78
6
96
35
21
17
26
1.95
42654257--42654371
29
4.2
26
78
7
86
36
20
17
26
1.94
42658475--42658546
26
2.7
26
84
6
81
31
27
18
22
1.97
42658496--42658546
26
2.0
26
92
0
84
29
25
21
23
1.99
42660292--42660337
23
2.0
23
95
0
83
17
4
19
58
1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332