genome.fa.s13.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  115  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37081313--37081415	42	2.5	42	85	0	125	33	15	22	29	1.95
37106835--37106958	38	3.2	38	79	6	124	28	25	21	25	1.99
37109826--37109850	12	2.1	12	100	0	50	76	0	24	0	0.80
37114422--37114476	18	3.1	18	81	2	58	36	10	9	43	1.72
37115251--37115340	27	3.3	27	79	0	108	40	12	17	30	1.86
37117970--37118049	42	1.9	42	84	5	108	35	28	12	23	1.91
37122307--37122530	45	4.9	44	80	9	202	25	23	16	34	1.95
37122338--37122530	46	4.2	44	81	5	183	25	24	16	34	1.95
37122386--37122532	23	6.4	23	72	14	101	24	23	17	34	1.95
37122338--37122532	91	2.1	89	83	7	232	25	24	16	34	1.95
37123919--37124044	46	2.7	46	88	0	180	31	27	19	21	1.97
37138892--37139098	46	4.4	46	76	14	149	22	32	16	28	1.96
37145581--37145667	44	2.0	44	84	8	115	24	32	18	25	1.97
37147419--37147451	15	2.2	15	100	0	66	45	0	36	18	1.49
37151228--37151270	21	2.0	21	95	0	77	32	23	32	11	1.90
37152996--37153026	12	2.6	12	100	0	62	16	58	16	9	1.63
37157081--37157252	93	1.8	93	94	0	308	27	29	21	21	1.99
37157074--37157249	46	3.8	46	79	12	207	28	28	21	21	1.98
37161582--37161719	66	2.1	65	85	8	181	42	18	23	15	1.89
37162058--37162207	43	3.5	43	86	0	183	22	17	28	32	1.96
37162086--37162248	43	3.8	43	88	0	191	24	15	28	31	1.95
37173243--37173299	29	2.0	29	100	0	114	59	7	21	12	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37175781--37175815	14	2.6	14	95	4	63	51	0	28	20	1.47
37176184--37176431	128	1.9	128	87	1	363	35	14	18	31	1.92
37205111--37205157	21	2.2	21	85	7	60	23	23	25	27	2.00
37210190--37210876	47	14.5	47	95	1	1142	32	8	29	29	1.87
37210994--37211072	37	2.1	37	88	0	113	24	17	31	26	1.97
37214113--37214143	16	2.0	15	93	6	53	41	0	0	58	0.98
37218678--37218715	16	2.4	16	100	0	76	15	21	10	52	1.72
37219272--37219311	14	2.8	15	88	7	57	55	0	2	42	1.13
37222396--37222581	40	4.7	40	88	5	252	24	22	27	26	2.00
37222449--37222614	80	2.1	79	86	5	228	25	20	27	26	1.99
37224653--37225049	198	2.0	198	97	0	749	37	16	10	35	1.83
37230911--37231030	56	2.1	56	98	0	231	45	9	23	22	1.81
37232475--37234448	47	41.6	47	81	9	1858	33	10	28	28	1.89
37232475--37234448	96	20.8	94	81	9	1865	33	10	28	28	1.89
37232897--37232979	27	3.3	27	60	16	68	34	4	26	33	1.78
37233354--37233475	22	5.3	22	62	21	61	33	11	29	25	1.91
37237996--37238127	43	3.1	42	74	9	117	24	16	27	31	1.96
37238009--37238114	43	2.5	42	80	4	124	25	16	27	30	1.97
37243191--37243251	30	2.0	30	83	0	77	31	22	8	37	1.84
37249034--37249174	64	2.2	64	85	2	185	33	10	16	39	1.83
37249382--37249423	22	1.9	22	90	9	68	21	16	28	33	1.95
37253090--37253267	40	4.5	40	87	3	227	24	22	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37257831--37257862	16	2.0	16	100	0	64	18	6	12	62	1.50
37264441--37264480	6	6.3	6	83	11	53	32	5	12	50	1.62
37264687--37264730	21	2.0	21	87	12	63	45	13	13	27	1.81
37274589--37274625	18	2.1	18	89	0	56	35	5	27	32	1.79
37274607--37274695	33	2.7	32	84	3	97	42	11	23	22	1.85
37274683--37274756	28	2.5	30	80	6	80	44	18	21	14	1.86
37274706--37274770	28	2.3	28	78	5	78	41	26	20	12	1.87
37278928--37278963	3	12.0	3	88	11	56	66	0	33	0	0.92
37278923--37278960	18	2.1	18	100	0	76	68	0	31	0	0.90
37279991--37280081	28	3.2	28	81	3	112	29	13	23	34	1.92
37290233--37290289	17	3.4	17	78	4	71	52	3	7	36	1.46
37290310--37290358	20	2.5	20	100	0	98	53	0	16	30	1.43
37290444--37290510	16	4.0	15	73	19	53	37	1	2	58	1.23
37300109--37300226	43	2.8	43	81	1	139	32	25	16	25	1.97
37300632--37300667	8	4.4	8	96	3	63	63	22	0	13	1.29
37303027--37303074	26	2.0	26	84	15	68	45	12	2	39	1.54
37303181--37303357	48	3.3	55	74	17	156	51	4	2	40	1.37
37310906--37311266	47	7.6	46	70	14	163	27	20	28	23	1.99
37318404--37318540	60	2.3	60	85	8	172	25	25	20	28	1.99
37318403--37318504	28	3.5	27	71	19	80	24	28	20	26	1.99
37323877--37323917	20	2.0	21	85	4	57	41	0	17	41	1.49
37323611--37325451	924	2.0	929	88	2	2776	35	9	20	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37327480--37327553	23	3.3	23	81	7	71	35	17	24	22	1.95
37327489--37327566	23	3.4	23	74	10	70	37	16	24	21	1.94
37334404--37334437	17	1.9	18	88	5	52	11	23	44	20	1.84
37334496--37334610	29	4.0	29	77	2	99	27	15	28	27	1.96
37339152--37339177	7	3.7	7	100	0	52	0	11	46	42	1.40
37340679--37340772	29	3.3	29	83	1	118	28	15	27	27	1.97
37341782--37341817	19	1.9	19	94	5	65	22	8	11	58	1.59
37341820--37341854	18	2.0	18	88	5	54	31	20	20	28	1.97
37341970--37342057	44	2.0	44	93	0	149	23	17	27	31	1.97
37342504--37342533	15	2.0	15	100	0	60	20	0	13	66	1.24
37351935--37352032	27	3.5	28	88	5	128	26	14	27	31	1.95
37351963--37352045	27	3.0	27	87	5	96	30	12	25	32	1.92
37351935--37352046	28	4.0	27	83	6	98	28	13	25	33	1.93
37358703--37358800	27	3.5	28	90	2	135	26	13	28	31	1.94
37358731--37358813	27	3.0	27	87	5	96	30	12	25	32	1.92
37358703--37358814	28	4.0	27	83	6	98	28	12	25	33	1.92
37366066--37366187	44	2.7	45	83	2	165	20	15	31	31	1.94
37371280--37371389	23	4.8	23	77	14	102	33	18	23	24	1.97
37371273--37371389	45	2.6	46	84	10	152	35	17	23	23	1.96
37376484--37376541	30	1.9	30	86	6	82	15	24	34	25	1.95
37380108--37380186	37	2.1	37	90	0	122	25	31	18	24	1.98
37380313--37380801	47	10.5	47	98	1	925	29	30	8	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37380313--37380801	93	5.2	93	97	1	919	29	30	8	31	1.88
37380313--37380801	140	3.5	141	97	2	925	29	30	8	31	1.88
37385638--37385689	27	1.9	27	96	0	95	13	25	32	28	1.93
37385575--37385783	103	2.0	102	94	2	366	18	20	29	31	1.96
37385703--37385851	69	2.1	71	90	2	230	24	17	28	30	1.97
37400802--37401021	103	2.2	101	89	4	327	17	18	32	30	1.95
37400943--37401091	70	2.1	70	88	2	219	23	16	30	30	1.96
37405436--37405482	24	2.0	24	100	0	94	29	17	25	27	1.97
37409682--37409759	39	2.0	39	92	0	129	26	12	17	42	1.86
37413342--37413605	46	5.6	47	78	9	202	27	18	28	26	1.98
37420964--37421187	45	4.8	47	81	9	189	25	18	30	24	1.98
37420970--37421140	92	1.9	92	83	9	224	25	19	30	23	1.98
37420968--37421187	92	2.4	90	77	13	216	25	19	30	24	1.98
37420969--37421235	48	5.7	48	75	13	150	26	19	30	23	1.98
37428788--37429050	46	5.6	46	77	13	200	28	18	28	24	1.98
37428835--37429012	46	4.0	43	82	10	205	25	17	30	25	1.97
37436421--37436581	47	3.5	44	78	11	155	26	29	16	26	1.97
37438309--37438447	27	5.1	27	85	7	151	35	21	24	17	1.95
37438309--37438420	54	2.1	54	89	3	172	36	22	25	16	1.94
37445299--37445326	14	2.0	14	100	0	56	42	35	7	14	1.73
37452127--37452305	79	2.3	79	82	9	206	27	26	21	24	1.99
37452124--37452305	39	4.6	40	79	10	178	28	26	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37455098--37455282	40	4.7	40	80	7	200	24	23	27	24	2.00
37455151--37455315	79	2.1	79	82	6	192	26	20	27	25	1.99
37457526--37457664	27	5.1	27	85	7	160	35	21	25	17	1.95
37457526--37457664	54	2.6	54	87	4	190	35	21	25	17	1.95
37470860--37470899	19	2.1	19	95	0	71	35	10	12	42	1.76
37482570--37482667	27	3.5	28	87	2	126	26	13	27	32	1.93
37482598--37482680	27	3.0	27	85	5	87	30	12	24	33	1.91
37482570--37482681	28	4.0	27	81	6	89	28	12	25	33	1.92
37490723--37490820	27	3.5	28	90	2	135	26	13	28	31	1.94
37490751--37490833	27	3.0	27	87	5	96	30	12	25	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332