genome.fa.s13.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  161  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53110082--53110410	27	12.1	27	74	9	132	42	20	7	29	1.80
53109982--53110130	81	1.8	81	82	0	190	30	17	8	43	1.78
53109961--53110142	81	2.2	81	74	0	184	33	20	7	39	1.80
53110148--53110328	81	2.2	80	90	0	272	42	19	8	29	1.81
53110123--53110327	54	3.8	54	83	5	238	43	20	8	28	1.80
53110118--53110349	54	4.3	52	76	13	177	43	19	7	28	1.79
53110480--53110541	27	2.3	27	94	0	106	30	22	29	17	1.97
53110470--53110563	27	3.5	26	83	9	102	32	19	25	22	1.97
53111363--53111485	26	4.8	26	91	1	196	26	24	22	26	2.00
53111745--53111857	31	3.7	31	79	9	119	31	18	23	26	1.97
53114078--53114277	54	3.7	54	87	0	256	30	23	8	38	1.83
53114103--53114277	27	6.5	27	93	0	278	28	23	8	40	1.82
53114090--53114646	27	20.6	27	78	5	133	37	20	9	33	1.84
53114103--53114315	81	2.6	81	83	0	210	30	22	7	38	1.82
53114279--53114623	54	6.4	54	79	4	239	40	18	9	31	1.84
53114265--53114620	81	4.4	80	76	7	288	39	19	9	31	1.84
53114655--53114710	27	2.1	26	87	9	78	37	12	12	37	1.81
53114771--53114850	27	3.0	27	90	3	117	32	21	26	20	1.97
53115649--53115743	25	3.7	26	84	1	104	26	21	23	29	1.99
53115684--53115750	25	2.8	25	79	4	75	31	22	17	28	1.97
53115889--53115976	42	2.1	42	87	4	124	31	13	18	36	1.90
53116004--53116082	31	2.5	31	95	0	140	29	17	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53121924--53122001	37	2.1	37	85	2	104	25	32	17	24	1.97
53122119--53122458	47	7.1	47	96	1	581	30	30	8	31	1.86
53131116--53131155	20	2.0	20	85	5	53	7	20	15	57	1.61
53133164--53133285	50	2.4	50	83	5	149	31	18	30	19	1.96
53133311--53133410	43	2.3	43	79	3	121	28	17	26	29	1.97
53138049--53138081	15	2.1	17	88	11	52	69	15	9	6	1.34
53140364--53140439	23	3.5	22	75	19	63	67	5	5	22	1.32
53146008--53146040	15	2.1	17	88	11	52	69	15	9	6	1.34
53153465--53153550	40	2.2	39	87	2	118	24	17	29	29	1.97
53161296--53161378	26	3.3	25	88	8	116	26	22	22	27	1.99
53161587--53161649	31	2.1	30	90	3	99	38	15	20	25	1.92
53177939--53178156	40	5.5	40	90	2	325	23	23	28	24	2.00
53183435--53183791	47	7.6	47	93	1	572	32	8	30	29	1.86
53185203--53185472	40	6.8	40	92	1	418	23	21	29	25	1.99
53189497--53190567	47	22.6	47	93	1	1746	33	8	29	29	1.86
53189497--53190567	143	7.5	141	93	1	1764	33	8	29	29	1.86
53189704--53189779	22	3.3	22	66	16	64	32	10	30	26	1.90
53189497--53190567	190	5.6	188	94	1	1746	33	8	29	29	1.86
53189990--53190065	22	3.3	22	66	16	64	32	10	30	26	1.90
53200980--53201027	16	2.9	17	76	11	55	0	56	0	43	0.99
53200985--53201042	25	2.4	23	77	11	64	0	50	0	50	1.00
53219081--53219194	43	2.7	44	78	8	119	28	17	22	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53219400--53219439	20	2.0	20	85	9	55	35	2	22	40	1.68
53229538--53229798	48	5.4	46	74	10	143	29	19	27	22	1.98
53229535--53229793	94	2.7	95	80	7	265	29	20	27	23	1.99
53229535--53229798	49	5.5	48	74	9	200	29	19	27	23	1.98
53239991--53240411	27	15.6	27	82	3	427	30	10	20	39	1.86
53240729--53240818	28	3.2	28	81	6	110	28	37	14	18	1.91
53246481--53246621	50	2.9	51	84	6	175	29	17	25	27	1.98
53253850--53254084	79	3.0	79	98	0	443	28	9	26	35	1.87
53257452--53257616	50	3.2	50	86	8	190	31	23	21	23	1.98
53257485--53257616	50	2.6	50	91	4	205	31	22	21	23	1.98
53265616--53265829	39	5.5	39	89	6	305	22	23	28	25	1.99
53272329--53272367	5	7.6	5	85	5	51	84	0	15	0	0.62
53273621--53273878	40	6.5	40	92	2	387	22	23	28	25	2.00
53279902--53280390	47	10.3	47	90	3	728	33	8	29	28	1.87
53279902--53280390	96	5.1	96	95	0	797	33	8	29	28	1.87
53293852--53293877	12	2.2	12	100	0	52	7	23	30	38	1.83
53294478--53294506	13	2.2	13	100	0	58	31	0	13	55	1.39
53300626--53301245	47	13.1	47	93	3	1027	31	8	29	29	1.88
53301362--53301439	36	2.1	37	85	2	104	24	17	30	26	1.97
53304265--53304522	40	6.5	40	88	3	328	25	28	23	22	1.99
53307618--53307731	43	2.7	41	81	8	113	28	26	16	28	1.97
53308345--53308408	33	1.9	33	96	0	119	31	25	7	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53309777--53309823	24	2.0	24	91	0	76	27	38	4	29	1.76
53319050--53319232	39	4.7	40	80	10	200	24	22	27	25	2.00
53319103--53319265	78	2.1	77	82	8	188	26	21	26	25	1.99
53326988--53327172	79	2.3	81	83	7	227	24	22	27	24	2.00
53326989--53327172	40	4.6	40	82	9	207	25	22	27	24	2.00
53327041--53327205	79	2.1	79	83	6	201	26	21	27	24	1.99
53394803--53395007	27	7.6	27	83	3	223	26	15	29	29	1.96
53394804--53395007	54	3.8	54	84	3	257	25	15	29	29	1.96
53400501--53400539	8	4.6	8	84	12	51	56	12	0	30	1.37
53400543--53400585	21	2.0	22	86	4	61	41	0	0	58	0.98
53401058--53401106	18	2.6	20	71	15	59	65	0	0	34	0.93
53401563--53402009	111	4.1	111	94	2	803	34	9	14	41	1.79
53401563--53402009	219	2.0	219	95	1	797	34	9	14	41	1.79
53402405--53402438	17	1.9	18	94	5	61	67	0	0	32	0.91
53407791--53408171	96	3.9	97	85	2	462	30	19	26	24	1.98
53407792--53408169	48	7.7	49	79	12	357	30	19	26	24	1.98
53412139--53412283	40	3.6	40	85	4	193	25	24	26	23	2.00
53442599--53442629	14	2.2	14	94	0	53	70	25	0	3	1.02
53444812--53444840	14	2.1	14	100	0	58	20	24	27	27	1.99
53447844--53448033	40	4.8	40	88	1	256	24	28	21	25	1.99
53449765--53449795	13	2.3	14	94	5	55	12	9	0	77	0.99
53449765--53449799	13	2.6	14	86	9	54	11	11	0	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53454487--53454697	40	5.3	40	86	5	250	28	28	19	23	1.98
53454936--53454988	25	2.1	25	100	0	106	24	22	18	33	1.97
53462584--53462795	40	5.3	39	87	5	248	28	27	20	23	1.99
53471450--53471474	13	1.9	13	100	0	50	88	0	0	12	0.53
53473911--53473940	15	2.0	15	93	0	51	13	36	6	43	1.70
53478756--53479048	50	5.8	50	77	4	232	32	25	16	25	1.96
53478754--53479046	101	2.9	98	75	5	257	32	26	16	25	1.96
53478963--53479045	26	3.2	26	67	16	73	40	27	9	21	1.84
53482548--53482645	27	3.7	27	80	4	110	28	13	13	44	1.81
53482548--53482630	26	3.1	27	81	8	100	32	12	13	42	1.81
53482975--53483009	18	1.9	18	88	0	52	17	17	20	45	1.85
53487930--53487971	17	2.5	17	80	7	50	78	0	7	14	0.95
53488233--53488273	16	2.4	18	80	12	50	43	21	9	24	1.83
53490121--53490450	48	6.9	47	77	6	277	23	29	18	28	1.98
53490118--53490440	96	3.4	96	80	3	337	22	29	18	28	1.98
53490121--53490450	144	2.3	143	81	4	378	23	29	18	28	1.98
53499941--53500160	40	5.6	40	82	4	250	25	21	26	26	2.00
53502030--53502192	40	4.1	40	88	3	215	25	28	23	22	1.99
53503429--53503604	51	3.5	51	96	0	309	17	22	10	48	1.78
53511275--53511458	40	4.6	40	84	6	239	25	23	26	24	2.00
53511275--53511458	80	2.3	80	88	3	264	25	23	26	24	2.00
53519466--53519720	96	2.7	96	84	6	329	20	26	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53519450--53519723	144	1.9	143	84	3	361	20	27	22	29	1.99
53519450--53519720	48	5.6	47	79	10	271	21	27	22	29	1.99
53524642--53524863	46	4.7	48	78	9	185	22	27	20	29	1.98
53524737--53524908	94	1.8	92	82	4	220	23	25	20	30	1.99
53528618--53528684	35	1.9	35	96	0	125	38	0	29	31	1.58
53543551--53543583	16	1.9	18	88	11	52	15	15	21	48	1.81
53548088--53548156	34	2.0	34	91	0	111	43	2	21	31	1.67
53550300--53550568	56	4.8	56	91	2	387	28	16	22	32	1.96
53550300--53550568	114	2.4	113	89	1	387	28	16	22	32	1.96
53557498--53557526	15	1.9	15	100	0	58	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332