genome.fa.s13.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  122  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39444182--39444618	27	16.2	27	81	3	468	41	9	21	27	1.84
39446141--39446212	35	2.1	35	100	0	144	48	18	11	22	1.79
39446663--39446720	30	1.9	30	85	0	80	27	39	17	15	1.90
39448295--39448409	42	2.7	42	82	2	133	28	24	13	33	1.93
39453404--39453459	28	2.0	28	100	0	112	32	17	21	28	1.96
39455790--39455829	21	2.0	21	85	5	55	25	30	35	10	1.88
39464689--39464762	27	2.7	27	80	0	67	31	21	10	36	1.88
39464714--39464805	27	3.4	27	92	0	148	26	19	9	44	1.81
39464797--39464935	27	5.2	27	73	10	97	39	21	10	28	1.86
39464837--39464939	27	3.8	26	82	8	118	42	21	5	30	1.76
39464837--39464960	54	2.3	55	83	9	150	43	21	5	29	1.75
39464937--39465022	27	3.1	27	79	14	86	39	16	8	36	1.78
39465076--39465136	27	2.3	26	78	13	70	37	19	22	19	1.94
39465949--39466018	25	2.8	25	86	2	97	28	24	21	25	1.99
39465949--39466031	25	3.4	25	79	14	84	31	21	21	25	1.98
39470263--39470302	18	2.2	18	100	0	80	35	17	17	30	1.93
39474458--39474489	15	2.2	14	94	5	55	75	0	25	0	0.81
39477888--39478082	54	3.6	53	77	9	189	35	17	25	21	1.95
39479632--39479706	37	2.0	37	87	5	107	26	30	20	22	1.98
39479829--39480827	47	20.9	47	92	3	1622	29	29	8	32	1.86
39479829--39480827	96	10.5	96	92	2	1612	29	29	8	32	1.86
39479831--39480827	143	7.0	141	93	2	1627	29	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39483065--39483105	21	2.0	21	85	0	55	46	7	9	36	1.65
39484112--39484206	42	2.2	43	96	1	174	25	13	33	27	1.93
39484193--39484263	28	2.6	29	80	13	78	25	15	30	28	1.96
39484574--39484750	79	2.3	79	86	4	234	25	20	27	25	1.99
39484574--39484750	39	4.5	40	88	5	236	25	20	27	25	1.99
39597645--39597849	27	7.6	27	85	3	205	29	29	15	26	1.96
39597645--39597848	54	3.8	54	84	3	257	29	29	15	25	1.96
39597699--39597848	81	1.9	81	88	0	228	27	28	16	27	1.97
39599697--39600019	39	8.3	39	90	2	499	18	21	29	29	1.97
39607842--39608010	47	3.6	47	78	14	197	30	28	18	22	1.97
39607791--39608059	93	2.8	93	91	2	412	29	27	20	22	1.98
39607786--39608056	46	5.7	46	73	18	234	29	27	19	22	1.98
39608478--39608538	30	2.0	30	90	0	95	31	24	8	36	1.85
39613502--39613595	30	3.2	30	86	1	136	34	23	13	28	1.93
39625575--39625725	43	3.5	43	75	14	134	29	18	21	30	1.97
39625605--39625733	43	3.0	43	80	10	138	26	16	24	33	1.96
39625616--39625725	42	2.6	42	82	4	141	26	18	23	31	1.97
39637986--39638031	24	1.9	24	95	0	83	47	19	13	19	1.81
39641962--39642035	37	2.0	37	100	0	148	37	21	21	18	1.94
39643671--39643799	39	3.3	39	76	7	111	20	27	20	32	1.97
39651642--39651755	38	3.0	39	84	3	151	21	27	20	30	1.98
39654494--39654527	17	2.1	16	89	10	52	26	14	32	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39656946--39657060	39	2.9	39	84	0	140	21	26	20	32	1.98
39663536--39663609	29	2.6	29	89	4	105	25	16	32	25	1.96
39669267--39669463	56	3.5	56	86	3	272	35	24	11	28	1.91
39675645--39675791	43	3.5	41	80	5	150	33	23	14	28	1.94
39676026--39676077	25	2.1	25	96	0	95	19	25	3	51	1.63
39689351--39689512	47	3.5	46	76	13	131	30	17	29	23	1.97
39704795--39705070	27	10.2	27	85	0	363	39	19	8	32	1.82
39704795--39705135	81	4.2	80	83	3	360	39	20	8	31	1.83
39704795--39705135	54	6.3	54	84	3	382	39	20	8	31	1.83
39704795--39705142	27	12.9	27	82	6	285	38	20	8	32	1.83
39704832--39705192	27	13.4	27	81	4	136	37	21	8	32	1.84
39705174--39705447	27	10.2	27	84	2	270	35	18	20	25	1.95
39705174--39705430	81	3.2	81	82	5	313	36	19	19	24	1.95
39705875--39705939	22	3.0	21	78	13	60	20	24	23	32	1.98
39706097--39706197	27	3.8	26	81	5	85	19	22	19	37	1.94
39706359--39706472	6	18.7	6	76	13	108	20	17	14	47	1.83
39706335--39706415	31	2.6	31	92	2	126	19	16	14	49	1.80
39706359--39706458	37	2.7	37	90	0	146	20	18	15	47	1.83
39707172--39707332	40	4.0	40	90	1	234	19	20	31	29	1.97
39707321--39707414	43	2.2	43	84	0	134	11	24	30	32	1.91
39707390--39707424	16	2.2	16	94	0	61	11	31	25	31	1.91
39707397--39707430	16	2.1	16	88	0	50	17	32	26	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39707556--39707609	25	2.2	25	86	6	74	29	9	31	29	1.88
39707593--39707692	28	3.5	28	72	12	105	21	20	29	30	1.98
39707629--39707722	28	3.4	28	71	12	86	19	18	34	28	1.95
39707592--39707718	57	2.2	57	94	1	220	19	19	31	29	1.97
39717818--39717855	19	2.0	20	85	15	53	39	23	0	36	1.55
39718084--39718202	46	2.6	46	89	0	175	31	26	18	23	1.97
39718626--39718686	30	2.0	30	83	3	77	32	24	8	34	1.85
39720480--39720579	43	2.3	43	77	3	112	30	20	23	27	1.98
39724025--39724412	194	2.0	194	93	0	668	26	20	14	37	1.92
39733989--39734094	43	2.5	42	80	7	117	34	23	16	24	1.95
39742113--39742296	79	2.3	82	82	8	220	24	27	22	25	2.00
39742113--39742296	40	4.7	40	82	7	216	24	27	22	25	2.00
39852014--39852220	53	3.8	53	78	4	209	36	18	24	20	1.95
39856754--39856921	26	6.5	26	69	10	103	22	16	23	37	1.94
39856768--39856916	78	1.9	78	83	5	194	21	16	23	38	1.92
39857031--39857100	33	2.1	33	100	0	140	34	8	11	45	1.71
39857965--39858067	54	1.9	54	82	4	127	33	24	22	19	1.97
39861371--39861399	14	2.1	14	100	0	58	41	0	13	44	1.44
39863843--39863881	15	2.5	15	91	4	60	15	12	15	56	1.68
39866701--39866784	28	3.2	28	65	25	83	23	16	29	29	1.96
39866645--39866837	50	3.9	50	83	1	226	24	20	26	27	1.99
39896030--39896196	42	4.0	42	79	4	176	30	26	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39898848--39899030	79	2.3	81	84	7	232	25	27	22	24	2.00
39898827--39899030	40	5.1	40	82	8	238	25	27	22	24	2.00
39906544--39906727	40	4.7	40	82	7	216	26	27	22	23	2.00
39906511--39906727	79	2.7	81	79	9	209	25	27	21	25	2.00
39911411--39911448	20	1.9	20	94	0	67	21	34	31	13	1.91
39928041--39928132	43	2.1	43	87	0	130	20	31	27	20	1.98
39929577--39929709	48	2.8	48	78	6	128	29	17	29	24	1.97
39932334--39932599	47	5.7	47	74	13	185	23	29	18	28	1.98
39932342--39932554	93	2.3	93	79	9	229	23	29	18	28	1.98
39939340--39939873	47	11.4	47	93	0	883	32	8	29	28	1.88
39941974--39942047	29	2.6	29	87	8	98	27	14	32	25	1.95
39942447--39942513	23	3.2	23	60	24	56	22	23	29	23	1.99
39942362--39942558	40	4.9	40	83	5	186	24	23	27	23	2.00
39944384--39944412	11	2.6	11	100	0	58	93	0	0	6	0.36
39946235--39946812	47	12.4	47	94	1	959	32	8	29	29	1.88
39946241--39946755	184	2.8	183	95	2	922	32	8	29	29	1.87
39946235--39946812	231	2.5	233	93	2	964	32	8	29	29	1.88
39946235--39946812	278	2.1	279	93	1	971	32	8	29	29	1.88
39946935--39947009	37	2.0	37	87	5	107	22	20	30	26	1.98
39949431--39949456	7	3.7	7	100	0	52	88	0	0	11	0.52
39951378--39951404	13	2.1	13	100	0	54	11	29	22	37	1.89
39954218--39954304	18	4.6	18	68	18	59	55	0	3	41	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39954185--39954314	59	2.2	59	91	1	217	51	0	5	42	1.30
39955914--39956104	40	4.7	40	92	1	283	21	16	26	35	1.95
39965394--39965463	28	2.5	28	85	0	86	31	24	18	25	1.98
39975520--39975558	21	1.9	21	89	5	62	25	2	23	48	1.63
39979367--39979427	30	2.0	30	83	0	77	31	22	8	37	1.84
39983338--39983530	40	4.8	40	89	6	241	26	21	24	27	1.99
39983338--39983558	40	5.5	39	85	6	171	27	21	23	27	1.99
39983342--39983558	80	2.7	80	78	7	235	27	21	24	26	1.99
39991522--39991669	40	3.7	40	89	5	219	29	21	22	27	1.99
39991526--39991687	40	4.1	40	88	4	202	28	21	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332