genome.fa.s13.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  152  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49868157--49868369	46	4.6	46	75	11	186	27	19	29	23	1.98
49879363--49879413	26	2.0	26	92	3	86	43	0	3	52	1.19
49880141--49880200	30	2.0	30	83	0	75	38	5	25	31	1.77
49883099--49883162	25	2.6	25	87	0	92	31	21	21	25	1.98
49884974--49885003	9	3.3	9	95	0	51	40	0	50	10	1.36
49890101--49890144	23	2.0	21	86	8	61	47	0	40	11	1.39
49891494--49891567	27	2.7	28	85	6	98	20	22	10	45	1.82
49896852--49896930	27	2.9	27	78	12	56	41	17	8	31	1.80
49896865--49896940	27	2.8	26	84	4	80	40	19	9	30	1.83
49896936--49897147	27	7.9	27	85	4	225	27	21	8	41	1.82
49897052--49897158	54	2.0	54	83	0	133	32	17	6	42	1.75
49896990--49897173	81	2.3	81	80	3	192	29	20	8	40	1.82
49897133--49897264	54	2.4	54	88	2	194	40	19	9	31	1.83
49897138--49897264	27	4.7	27	82	3	157	40	20	9	29	1.84
49897302--49897353	27	1.9	27	85	14	72	40	11	13	34	1.81
49897395--49897468	27	2.7	27	76	12	71	36	20	20	22	1.95
49897408--49897472	27	2.4	27	82	5	78	35	18	24	21	1.96
49898275--49898398	26	4.8	26	88	1	187	26	23	25	25	2.00
49898543--49898634	42	2.2	42	92	0	148	29	14	21	34	1.93
49898658--49898736	31	2.5	31	93	0	140	29	17	26	26	1.98
49900192--49900301	27	4.1	26	84	5	130	16	21	22	39	1.92
49900423--49900493	19	3.8	19	74	10	74	19	18	15	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49900420--49900513	6	15.3	6	72	16	77	20	17	14	47	1.82
49900420--49900504	37	2.3	37	89	0	125	20	17	14	48	1.81
49901854--49901935	27	2.8	30	71	28	86	20	24	20	34	1.97
49901879--49901997	27	4.5	26	86	5	157	15	23	22	38	1.92
49901876--49901997	54	2.3	54	88	1	174	16	22	22	38	1.93
49902116--49902203	6	14.3	6	74	17	74	18	18	14	48	1.81
49902126--49902183	25	2.3	25	93	0	98	17	20	17	44	1.86
49904152--49904256	27	3.9	27	78	9	99	40	20	8	30	1.82
49904152--49904256	54	1.9	54	82	3	131	40	20	8	30	1.82
49904247--49904457	27	7.8	27	83	2	235	28	23	8	40	1.83
49904409--49904688	27	10.3	27	74	6	170	37	19	10	33	1.85
49904220--49904484	54	4.9	53	78	0	134	30	22	7	38	1.83
49904247--49904484	81	2.9	82	80	3	196	29	22	7	39	1.82
49904409--49904582	54	3.2	54	81	3	188	36	20	8	35	1.82
49905586--49905735	26	5.8	26	89	3	223	28	24	23	24	1.99
49905880--49905971	42	2.2	42	92	0	148	29	14	21	34	1.93
49905995--49906102	31	3.5	31	86	7	143	29	18	25	25	1.98
49908064--49908179	39	3.0	39	94	0	196	20	21	31	26	1.98
49908064--49908227	78	2.1	78	79	5	172	21	21	29	26	1.99
49911921--49912092	93	1.8	93	89	0	272	22	21	27	28	1.99
49911925--49912096	46	3.7	46	76	13	181	22	21	26	29	1.99
49919283--49919395	39	2.9	39	95	0	199	20	21	30	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49919283--49919426	78	1.8	78	82	2	182	22	21	29	27	1.99
49919566--49919624	28	2.1	28	96	0	109	38	8	15	37	1.78
49925161--49925205	21	2.2	21	84	11	58	31	28	2	37	1.69
49925778--49925802	11	2.3	11	100	0	50	0	12	0	88	0.53
49932750--49932826	27	2.8	28	78	9	70	29	27	11	31	1.92
49932932--49933032	50	2.0	50	84	3	132	29	27	12	29	1.93
49944990--49945019	12	2.5	12	100	0	60	6	23	43	26	1.78
49950294--49950355	29	2.1	30	85	8	83	24	3	11	61	1.44
49955267--49955320	27	2.0	27	100	0	108	25	11	11	51	1.70
49957029--49957082	22	2.5	23	79	11	69	33	1	5	59	1.31
49959368--49959417	24	2.2	22	82	13	57	66	8	0	26	1.19
49961390--49961660	47	5.8	46	76	14	211	26	18	29	24	1.98
49961390--49961661	94	2.9	94	83	8	315	27	18	29	24	1.98
49962797--49962835	21	1.9	20	89	5	60	17	38	23	20	1.93
49967594--49967644	20	2.7	19	82	14	61	37	19	0	43	1.51
49970717--49970931	41	5.1	41	66	16	118	28	18	27	25	1.98
49970653--49970962	84	3.7	84	95	0	530	29	18	26	25	1.98
49970653--49970944	42	7.0	42	65	14	163	29	18	26	25	1.98
49975499--49975650	42	3.6	42	75	7	157	28	25	15	30	1.95
49977308--49977420	56	2.0	56	100	0	226	49	5	7	38	1.53
49979649--49979771	55	2.2	56	88	2	176	26	12	28	33	1.92
49979649--49979771	28	4.4	28	90	2	176	26	12	28	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49979674--49979784	28	4.0	27	90	3	116	28	11	26	33	1.91
49983960--49984037	29	2.7	28	84	11	104	25	15	30	28	1.96
49983990--49984316	173	1.9	174	94	0	575	30	14	24	31	1.94
49989926--49990048	55	2.2	56	88	2	176	26	12	28	33	1.92
49989926--49990048	28	4.4	28	90	2	176	26	12	28	33	1.92
49989951--49990061	28	4.0	27	90	3	116	28	11	26	33	1.91
49994289--49994329	19	2.1	20	86	13	59	70	7	4	17	1.28
49995906--49996052	44	3.4	44	77	13	146	25	17	25	32	1.96
49998642--49998859	40	5.5	40	90	2	316	25	28	23	22	1.99
50006888--50007105	40	5.5	40	92	2	334	24	29	23	22	1.99
50019303--50019410	39	2.7	39	88	1	144	25	26	27	20	1.99
50021967--50022363	126	3.0	125	85	8	474	27	16	21	34	1.95
50022089--50022440	141	2.5	138	85	6	501	26	16	23	33	1.96
50024684--50024797	29	4.0	28	80	6	104	28	17	27	27	1.98
50030981--50031247	46	5.6	48	74	12	223	28	19	29	23	1.98
50031016--50031243	99	2.4	96	79	12	256	28	18	28	23	1.98
50032776--50032839	31	2.1	31	100	0	128	39	6	9	45	1.62
50037354--50037676	46	6.8	48	73	12	222	27	20	30	21	1.98
50043453--50043497	24	1.9	23	82	13	56	20	26	17	35	1.95
50044850--50044934	42	2.0	42	93	0	143	16	23	34	25	1.95
50044865--50044953	42	2.1	42	80	0	97	16	22	35	24	1.95
50050508--50050553	23	2.0	23	100	0	92	43	13	0	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50053384--50053611	50	4.6	50	75	8	203	30	24	18	26	1.98
50059418--50059491	31	2.4	31	74	19	73	37	18	2	40	1.65
50059664--50059731	25	2.7	25	83	0	82	23	20	23	32	1.98
50060446--50060490	23	2.0	22	82	8	54	31	11	17	40	1.85
50062705--50062760	12	4.9	12	77	20	50	78	1	17	1	0.92
50064913--50064939	5	5.4	5	100	0	54	18	0	0	81	0.69
50068933--50069042	43	2.6	42	80	5	123	30	16	22	30	1.96
50069563--50069604	20	2.1	20	100	0	84	19	9	33	38	1.84
50071269--50071680	39	10.6	39	81	1	423	16	30	17	34	1.93
50077745--50077808	27	2.4	27	83	0	74	25	21	17	35	1.95
50081371--50081489	29	4.1	29	90	1	177	26	12	30	30	1.93
50090968--50091049	27	3.0	27	76	8	76	35	19	23	21	1.96
50091378--50091428	19	2.6	19	87	3	75	13	39	19	27	1.90
50091784--50091875	27	3.4	27	82	5	114	23	20	19	35	1.95
50099287--50099466	66	2.8	64	78	9	197	28	16	30	23	1.96
50106679--50106725	19	2.4	20	85	3	69	12	36	19	31	1.89
50107107--50107174	26	2.7	23	80	14	82	25	14	23	36	1.93
50110487--50110602	1	116.0	1	86	0	160	4	0	1	93	0.45
50121340--50121477	67	2.0	67	84	5	177	29	21	28	20	1.98
50121411--50121462	27	2.0	26	84	3	68	34	21	26	17	1.95
50121735--50121791	19	3.2	19	87	12	93	5	36	28	29	1.79
50121741--50121799	16	3.5	17	88	11	86	5	35	27	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50122164--50122248	27	3.2	27	83	1	100	24	18	18	37	1.94
50129715--50129862	67	2.2	67	82	8	167	31	18	29	20	1.96
50133079--50133169	27	3.4	27	81	1	94	26	19	18	35	1.95
50136729--50136900	93	1.8	93	95	2	310	28	29	20	20	1.98
50136722--50136897	46	3.8	46	79	14	209	29	29	20	20	1.98
50144258--50144429	93	1.8	93	95	2	310	28	29	20	20	1.98
50144251--50144426	46	3.8	46	79	14	209	29	29	20	20	1.98
50145583--50145626	18	2.4	18	92	3	70	38	25	6	29	1.81
50145917--50145978	20	3.3	20	64	25	53	27	30	24	17	1.97
50148347--50148434	29	3.0	29	80	8	97	56	15	17	10	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332