genome.fa.s13.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  159  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52373172--52373213	22	1.9	22	95	0	75	40	16	9	33	1.81
52379479--52379599	46	2.6	46	85	5	154	28	19	26	25	1.98
52383215--52383257	6	7.3	6	84	10	54	11	2	2	83	0.83
52383215--52383258	17	2.6	16	85	10	52	11	2	4	81	0.92
52395189--52395243	21	2.6	21	88	0	83	30	34	7	27	1.84
52397017--52397301	48	5.9	48	72	1	203	27	17	30	23	1.97
52397030--52397300	96	2.8	100	74	6	272	28	18	30	23	1.97
52402109--52402237	49	2.6	49	79	7	154	24	28	19	27	1.98
52402250--52402411	48	3.4	48	74	4	166	22	24	22	30	1.99
52408792--52408827	13	2.8	13	95	0	63	27	30	30	11	1.91
52409828--52409997	49	3.5	48	74	5	148	25	25	19	29	1.98
52409970--52410141	48	3.6	48	76	12	176	22	26	20	30	1.98
52409970--52410190	94	2.3	94	81	6	250	23	26	20	29	1.99
52409911--52410187	46	5.8	47	74	8	159	23	25	20	30	1.98
52412161--52412242	42	2.0	42	100	0	164	42	13	17	26	1.86
52412611--52412639	13	2.2	13	100	0	58	55	13	0	31	1.39
52417114--52417541	48	8.9	48	77	3	396	27	20	29	22	1.98
52417123--52417541	96	4.4	96	84	2	450	27	20	29	22	1.98
52420573--52420641	30	2.3	29	87	9	95	42	24	15	17	1.88
52420966--52421009	16	2.8	16	82	0	52	27	18	22	31	1.97
52427192--52427424	48	4.9	48	86	3	290	29	27	15	27	1.96
52427257--52427448	96	2.0	95	79	6	208	29	25	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52429088--52429241	28	5.5	28	94	0	256	26	11	28	33	1.91
52430787--52430883	48	2.0	48	91	0	158	28	28	18	23	1.98
52433568--52433607	18	2.2	19	90	4	64	27	15	20	37	1.92
52436334--52436480	43	3.4	43	77	5	127	32	27	15	23	1.95
52444453--52444604	43	3.5	43	76	8	148	31	26	16	25	1.96
52444434--52444604	43	4.0	43	75	8	143	31	25	16	26	1.96
52453220--52453267	20	2.4	20	100	0	96	12	41	27	18	1.86
52458348--52458433	43	2.0	43	97	0	163	37	6	10	45	1.66
52462707--52462787	24	3.4	24	79	3	92	23	19	16	40	1.90
52464861--52464975	29	4.0	29	84	8	139	26	29	15	27	1.96
52464852--52464962	58	1.9	57	87	5	161	26	30	16	27	1.96
52465201--52465252	8	6.5	8	90	0	86	13	23	21	42	1.88
52475343--52475485	28	5.0	28	82	9	164	28	27	13	29	1.95
52475343--52475485	57	2.5	58	80	11	170	28	27	13	29	1.95
52477195--52477233	16	2.4	17	86	4	53	38	20	5	35	1.75
52478551--52478711	43	3.8	42	80	10	166	32	26	17	24	1.97
52485958--52486161	41	5.1	41	82	6	224	37	20	21	20	1.95
52486192--52486294	54	1.9	53	84	2	134	50	26	1	21	1.59
52487181--52487224	9	4.8	9	81	13	54	59	2	0	38	1.10
52487179--52487252	8	8.9	8	75	16	62	60	2	0	36	1.11
52487211--52487252	14	2.8	15	79	10	50	61	2	0	35	1.09
52490078--52490271	96	2.0	96	88	0	289	35	16	34	13	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52496173--52496358	43	4.3	43	74	3	151	29	18	25	26	1.98
52496173--52496358	86	2.2	85	83	2	221	29	18	25	26	1.98
52498057--52498104	25	1.9	25	91	0	78	47	12	10	29	1.74
52498938--52498987	20	2.7	19	80	20	61	52	2	2	44	1.24
52498944--52498991	25	1.9	25	83	8	62	52	2	2	43	1.24
52498891--52499046	68	2.2	70	76	10	160	50	3	1	43	1.31
52501639--52501695	21	2.5	24	74	25	61	49	3	3	43	1.36
52503613--52503661	25	2.0	25	91	0	80	53	24	2	20	1.56
52503816--52503881	33	2.0	33	82	8	82	51	7	6	34	1.55
52503828--52503893	33	2.0	33	82	5	80	51	6	9	33	1.58
52516677--52516702	10	2.6	10	100	0	52	53	7	0	38	1.30
52517216--52517284	29	2.4	29	78	9	79	26	8	20	44	1.80
52533190--52533345	27	5.7	27	78	6	145	27	28	16	28	1.97
52533195--52533346	54	2.8	55	80	4	182	26	27	16	28	1.97
52541246--52541399	27	5.7	27	77	8	136	27	27	16	28	1.97
52541251--52541400	54	2.8	54	80	6	171	26	27	16	29	1.97
52548064--52548287	118	1.9	120	83	7	296	25	27	21	24	1.99
52548064--52548287	40	5.7	40	86	7	287	25	27	21	24	1.99
52551149--52551268	57	2.1	57	88	0	177	35	19	19	26	1.95
52551674--52551727	24	2.2	24	96	0	99	44	11	18	25	1.83
52552661--52552706	24	1.9	24	100	0	92	39	6	6	47	1.55
52553949--52553982	16	2.1	16	94	0	59	23	17	11	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52556189--52556326	42	3.3	41	77	6	134	42	18	15	23	1.89
52556383--52556534	43	3.5	43	76	3	153	37	21	17	23	1.94
52556599--52556646	15	3.0	15	75	24	53	31	29	0	39	1.57
52560313--52560375	33	1.9	33	96	0	117	41	12	23	22	1.88
52561711--52562313	177	3.4	176	87	1	803	28	22	17	31	1.96
52562265--52562381	44	2.6	45	78	5	123	27	21	21	29	1.98
52561750--52562428	353	1.9	352	83	3	873	29	21	18	30	1.97
52561711--52562428	177	4.1	173	82	5	701	28	22	18	30	1.97
52561839--52562554	177	4.1	174	80	6	403	28	22	18	30	1.98
52562673--52562860	64	2.9	64	92	0	313	38	14	16	30	1.89
52563975--52564034	27	2.3	26	77	11	68	11	0	6	81	0.86
52569432--52569458	13	2.1	13	100	0	54	55	29	7	7	1.55
52577664--52577694	15	2.1	15	93	0	53	41	9	16	32	1.80
52578495--52578519	13	1.9	13	100	0	50	52	0	0	48	1.00
52579369--52579522	43	3.6	43	80	4	152	26	20	28	24	1.99
52581920--52582051	45	3.0	44	81	4	158	25	26	21	25	2.00
52583890--52583933	22	2.0	22	100	0	88	36	13	0	50	1.42
52610481--52610664	67	2.8	64	75	10	178	29	17	29	23	1.97
52616674--52616717	21	2.1	21	83	8	54	15	25	40	18	1.90
52621430--52621653	104	2.2	104	93	1	378	31	31	19	17	1.95
52621982--52622045	30	2.2	29	81	10	76	29	28	6	35	1.82
52621989--52622045	30	1.9	30	85	3	80	29	24	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52628906--52628954	25	2.0	25	91	0	80	30	32	22	14	1.93
52629078--52629128	26	2.0	26	96	0	93	29	35	23	11	1.90
52628984--52629206	103	2.2	104	92	2	369	31	31	18	17	1.95
52629535--52629598	30	2.2	29	81	10	76	29	28	6	35	1.82
52629542--52629598	30	1.9	30	85	3	80	29	24	7	38	1.82
52642821--52642881	27	2.3	27	80	5	70	31	13	22	32	1.92
52642974--52643025	23	2.3	23	100	0	104	13	25	34	26	1.93
52642974--52643025	10	4.5	12	75	24	58	13	25	34	26	1.93
52662466--52662522	27	2.1	27	86	0	78	22	17	21	38	1.93
52664382--52664406	10	2.5	10	100	0	50	68	0	0	32	0.90
52666153--52666308	33	4.7	33	69	10	86	28	20	28	22	1.98
52666146--52666275	66	2.0	67	80	4	147	28	20	29	22	1.98
52666318--52666420	45	2.3	45	86	0	152	37	18	23	20	1.94
52666435--52666501	30	2.2	30	94	0	116	40	14	20	23	1.90
52666465--52666649	46	4.0	46	85	2	235	42	14	23	19	1.88
52667099--52667145	24	2.0	23	91	4	76	10	4	36	48	1.57
52673124--52673304	39	4.6	39	75	16	169	25	27	22	24	2.00
52673124--52673305	78	2.3	79	81	10	205	25	26	22	24	2.00
52681077--52681262	40	4.7	40	81	11	211	25	25	22	25	2.00
52685458--52685494	19	1.9	20	88	5	58	45	18	2	32	1.64
52688764--52688879	28	4.2	28	81	6	121	36	21	22	19	1.95
52688764--52688879	57	2.1	54	82	7	135	36	21	22	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52690295--52690365	24	3.0	24	93	0	115	25	36	1	36	1.65
52696600--52696714	28	4.2	26	78	12	104	37	21	21	19	1.94
52698138--52698208	24	3.0	24	95	0	124	25	38	1	35	1.65
52701516--52701611	28	3.4	28	88	5	124	33	28	12	26	1.92
52705161--52705254	22	4.1	22	71	15	68	22	21	21	35	1.96
52708212--52708407	50	3.9	49	74	5	169	29	25	19	26	1.99
52708654--52708707	27	2.0	27	85	0	72	38	14	7	38	1.75
52715518--52715745	40	5.7	40	87	3	334	26	27	21	25	1.99
52740981--52741308	141	2.3	141	89	2	480	32	12	29	26	1.92
52740981--52741272	47	6.2	47	93	1	505	32	11	28	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332