Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  288  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96069796--96069904
42
2.6
43
76
16
113
19
24
17
38
1.93
96071811--96071856
23
2.1
23
84
8
60
54
8
0
36
1.32
96074944--96075000
26
2.3
25
76
8
62
54
7
10
28
1.60
96079102--96079150
20
2.7
18
77
22
57
51
4
2
42
1.32
96089957--96090159
96
2.1
96
93
0
343
33
37
6
22
1.80
96097770--96097811
21
2.0
21
85
0
57
38
21
4
35
1.75
96099140--96099164
11
2.3
11
100
0
50
48
0
36
16
1.46
96100213--96100254
19
2.2
19
100
0
84
21
9
21
47
1.79
96104647--96104677
16
1.9
16
93
0
53
54
3
0
41
1.16
96111719--96111807
28
3.2
28
75
16
78
22
13
1
62
1.37
96111802--96111841
16
2.4
17
84
15
57
27
7
0
65
1.20
96115458--96115486
15
1.9
15
100
0
58
41
0
0
58
0.98
96116353--96116397
23
2.0
23
95
0
81
35
17
0
46
1.49
96119158--96119198
22
1.9
21
90
5
64
73
2
9
14
1.19
96121423--96121467
16
2.6
17
86
13
58
33
0
0
66
0.92
96123456--96123515
25
2.4
25
100
0
120
36
3
3
56
1.32
96128410--96128464
27
2.0
28
85
3
76
14
21
36
27
1.93
96134160--96134196
12
3.0
13
84
11
51
29
40
18
10
1.85
96139346--96139380
17
2.0
18
88
5
54
17
20
5
57
1.60
96139786--96139812
2
13.5
2
100
0
54
0
48
0
51
1.00
96139814--96140013
108
1.9
108
90
0
319
32
25
14
29
1.94
96149926--96149955
14
2.1
14
100
0
60
36
26
30
6
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96151535--96151602
22
3.2
22
62
29
56
35
27
13
23
1.92
96151527--96151610
42
2.0
42
97
0
159
35
27
16
20
1.94
96154548--96154589
4
10.5
4
80
10
50
71
0
2
26
0.98
96159806--96159845
16
2.6
16
85
14
57
65
0
7
27
1.20
96159998--96160221
41
5.1
44
71
18
157
61
6
1
30
1.31
96160126--96160526
142
2.9
138
93
4
671
60
5
2
30
1.35
96160496--96160577
3
27.7
3
82
7
105
60
0
3
35
1.14
96159959--96160575
138
4.5
135
82
11
679
61
5
3
29
1.35
96162208--96163132
76
12.1
76
81
5
943
33
18
16
31
1.93
96162215--96163129
155
6.0
153
87
3
1108
33
18
16
31
1.94
96162209--96163131
231
4.0
228
82
4
1032
33
18
16
31
1.93
96175160--96175199
16
2.6
16
85
14
57
65
0
7
27
1.20
96175437--96175614
3
58.7
3
67
23
65
60
4
2
32
1.31
96175732--96175761
3
10.0
3
92
0
51
63
0
3
33
1.11
96175437--96175898
147
3.1
147
93
4
754
60
5
3
30
1.36
96176524--96176550
5
5.4
5
100
0
54
81
0
0
18
0.69
96178774--96178944
93
1.8
93
94
0
306
28
29
21
20
1.98
96178766--96178941
46
3.8
46
78
10
214
28
29
21
20
1.98
96181494--96181542
10
4.9
10
87
9
64
67
0
16
16
1.24
96186259--96186331
36
2.0
36
86
0
101
26
17
23
32
1.97
96189195--96189245
25
2.0
25
88
0
75
52
5
7
33
1.54
96191288--96191352
30
2.2
28
78
10
67
32
4
1
61
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96191378--96191407
12
2.5
12
100
0
60
33
0
0
66
0.92
96191913--96191972
29
2.0
30
81
9
70
38
1
1
58
1.18
96191918--96191983
29
2.3
28
76
7
69
34
4
1
59
1.27
96192009--96192059
12
4.5
12
78
14
63
31
0
1
66
1.03
96191994--96192051
21
2.8
20
80
15
64
27
0
3
68
1.05
96191998--96192070
33
2.2
32
90
4
110
30
0
4
65
1.11
96191994--96192059
12
5.2
13
72
22
52
28
0
3
68
1.05
96192084--96192124
13
2.9
15
75
10
50
41
4
0
53
1.22
96192440--96192474
18
1.9
18
94
0
61
20
0
5
74
1.02
96193542--96193572
15
2.1
15
100
0
62
54
6
6
32
1.51
96193850--96193899
25
2.0
25
100
0
100
32
4
16
48
1.64
96195999--96196077
35
2.2
36
86
2
106
31
18
20
29
1.97
96200255--96200286
10
3.2
10
100
0
64
50
9
9
31
1.66
96201800--96201848
25
2.0
25
84
8
64
36
22
14
26
1.92
96205601--96205660
23
2.9
20
85
9
68
35
3
5
56
1.37
96205970--96206102
18
7.5
18
86
8
193
39
10
12
36
1.78
96205961--96206102
35
4.0
35
93
2
230
39
9
13
37
1.78
96206363--96206394
16
2.0
16
100
0
64
18
12
0
68
1.20
96206594--96206645
14
3.6
14
76
19
52
38
1
0
59
1.08
96206629--96206678
26
1.9
26
83
0
64
36
4
0
60
1.16
96213441--96214141
119
6.0
119
93
2
1184
33
17
18
30
1.95
96213441--96214141
236
3.0
238
93
1
1184
33
17
18
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96214065--96214417
83
4.2
83
94
0
607
31
20
20
27
1.97
96214805--96214938
18
7.5
17
85
7
178
38
11
12
37
1.79
96214796--96214938
35
4.0
35
94
3
232
38
10
13
37
1.79
96215198--96215227
15
2.0
15
100
0
60
20
13
0
66
1.24
96215398--96215477
30
2.7
29
84
7
90
36
6
0
57
1.24
96215429--96215491
14
4.3
14
75
16
56
34
1
0
63
1.04
96216836--96216868
16
1.9
18
88
11
52
33
0
3
63
1.10
96216840--96216888
22
2.2
22
85
7
64
28
4
4
63
1.31
96229405--96229960
76
7.2
73
73
16
446
29
17
20
33
1.95
96229547--96229581
14
2.5
14
95
0
61
20
11
5
62
1.48
96229474--96229651
87
2.0
86
82
3
212
27
14
17
39
1.89
96229405--96229949
160
3.5
157
82
8
549
29
17
20
32
1.96
96229561--96229949
75
5.1
74
84
6
419
29
17
21
32
1.96
96229580--96230050
76
6.0
76
80
9
434
29
17
21
31
1.96
96229627--96229960
151
2.2
152
84
9
439
29
18
21
31
1.97
96229940--96229974
14
2.5
14
95
0
61
25
11
0
62
1.28
96229884--96230098
87
2.4
88
80
7
222
32
15
20
32
1.93
96231228--96231275
23
2.1
22
81
11
53
75
2
10
12
1.14
96232166--96232196
16
1.9
16
100
0
62
38
6
6
48
1.55
96232504--96232563
23
2.9
20
85
9
68
33
3
6
56
1.42
96232855--96232906
22
2.5
19
74
14
50
34
3
5
55
1.42
96233074--96233149
21
3.5
22
70
21
63
34
2
9
53
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96233139--96233217
40
2.0
41
82
12
101
36
5
8
49
1.56
96234244--96234274
15
2.1
15
93
0
53
54
9
6
29
1.57
96247287--96247363
36
2.2
33
80
11
84
42
1
7
48
1.40
96264637--96264711
36
2.1
36
94
0
132
30
21
1
46
1.59
96273400--96273468
29
2.4
28
74
11
68
31
2
1
63
1.18
96274330--96274495
84
2.0
84
84
2
215
30
18
13
37
1.89
96274921--96274969
22
2.2
22
92
0
80
30
32
20
16
1.94
96277901--96278048
43
3.4
43
82
5
138
31
23
16
28
1.96
96283355--96283401
24
2.0
23
84
12
60
31
17
8
42
1.79
96285603--96285748
43
3.4
42
74
11
136
34
24
13
27
1.92
96286725--96286772
24
2.0
24
100
0
96
33
16
8
41
1.78
96287133--96287214
40
2.1
38
86
4
110
31
18
19
30
1.96
96287467--96287513
21
2.2
21
84
0
58
17
4
31
46
1.67
96287506--96287579
23
3.2
22
79
11
78
24
0
29
45
1.53
96287510--96287573
16
4.1
16
76
6
60
25
0
25
50
1.50
96287510--96287565
15
3.7
15
76
4
58
25
0
25
50
1.50
96288170--96288213
23
1.9
23
95
0
79
45
15
18
20
1.85
96289516--96289573
24
2.4
24
94
0
98
44
3
3
48
1.36
96291568--96291596
14
2.1
14
93
6
51
34
0
10
55
1.34
96292253--96292320
25
2.7
25
86
0
109
7
2
25
64
1.33
96292540--96292771
43
5.4
43
81
1
232
27
20
25
27
1.99
96296408--96296492
27
3.1
27
84
5
100
14
22
34
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96296444--96296508
27
2.4
27
81
0
76
18
21
35
24
1.96
96298987--96299011
11
2.3
11
100
0
50
8
36
0
56
1.29
96301105--96301186
33
2.5
33
93
0
137
36
18
25
19
1.94
96302240--96302305
20
3.3
20
100
0
132
18
33
31
16
1.93
96305288--96305424
46
3.0
46
96
0
247
22
24
13
38
1.91
96307504--96307542
16
2.4
16
91
0
60
0
30
0
69
0.89
96310628--96310710
42
2.0
42
83
4
105
28
26
14
30
1.95
96310671--96310823
57
2.7
58
83
1
182
28
24
19
27
1.99
96315820--96315935
33
3.5
33
79
0
133
28
12
41
18
1.86
96316102--96316136
12
2.9
12
82
0
52
5
31
28
34
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332