Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  291  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96968079--96968136
9
6.7
9
78
13
59
37
3
0
58
1.15
96968086--96968227
12
12.6
11
71
21
84
34
2
2
61
1.20
96974896--96974929
15
2.3
15
89
0
50
50
11
2
35
1.54
96975449--96975496
3
16.0
3
100
0
96
66
0
0
33
0.92
96980604--96980663
29
2.0
30
87
3
86
25
8
31
35
1.85
96980709--96980735
14
1.9
14
100
0
54
51
7
18
22
1.70
96980961--96980998
13
2.9
13
96
0
67
5
10
0
84
0.77
96984679--96985122
224
2.0
224
95
0
800
44
16
13
25
1.84
96988664--96988697
16
2.1
16
88
0
50
50
14
17
17
1.79
96991492--96991532
21
2.0
21
90
0
64
29
21
29
19
1.98
96993438--96993471
16
2.1
16
88
0
50
50
14
17
17
1.79
96995010--96995086
40
1.9
41
84
7
104
48
1
6
44
1.37
96996356--96996395
14
2.9
14
82
14
55
40
2
2
55
1.27
96997573--96997641
20
3.4
20
64
4
57
65
4
2
27
1.26
96997884--96997968
27
3.1
26
73
15
73
30
4
1
63
1.22
96997920--96997990
19
3.7
18
78
9
70
25
4
2
67
1.22
96997884--96998017
56
2.3
57
80
8
148
30
5
1
62
1.26
96997884--96998011
28
4.5
28
73
8
107
30
5
1
62
1.27
96997779--96998406
329
1.9
332
95
4
1129
33
4
4
57
1.39
96998214--96998313
19
5.3
19
74
12
64
30
5
2
63
1.27
96998257--96998318
19
3.2
19
79
4
70
25
4
1
67
1.19
96998214--96998345
28
4.7
26
73
15
95
31
5
1
62
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96998223--96998318
9
10.3
9
67
18
54
26
5
2
66
1.23
96998321--96998374
26
2.0
27
85
7
74
46
1
0
51
1.11
96998427--96998587
88
1.8
88
83
2
216
32
10
22
34
1.88
97003992--97004048
30
1.9
30
82
13
73
45
3
0
50
1.18
97004185--97004237
13
4.1
13
76
9
54
47
13
1
37
1.54
97004187--97004239
26
2.0
26
89
7
81
45
11
1
41
1.51
97005480--97005527
24
2.0
24
100
0
96
33
25
8
33
1.86
97016461--97016493
15
2.3
15
89
5
50
48
6
0
45
1.27
97019807--97019864
30
1.9
30
85
0
80
41
1
24
32
1.65
97020076--97020107
13
2.5
13
94
0
55
31
0
12
56
1.37
97020202--97020443
50
4.7
50
84
6
281
26
23
28
20
1.99
97020202--97020451
100
2.4
104
87
6
357
26
23
28
21
1.99
97022624--97022727
47
2.2
45
82
12
129
31
22
13
32
1.92
97022763--97022995
31
7.5
31
93
0
369
26
26
18
28
1.98
97022973--97023149
50
3.5
50
87
2
230
27
20
15
36
1.93
97028024--97028085
32
1.9
32
100
0
124
40
12
9
37
1.77
97029494--97029549
28
2.0
28
100
0
112
35
28
3
32
1.74
97029498--97029561
28
2.3
28
88
0
92
39
29
3
28
1.72
97042947--97042975
14
2.1
14
100
0
58
51
13
13
20
1.75
97043008--97043055
24
2.0
24
95
0
87
52
16
18
12
1.75
97044170--97044301
66
2.0
66
100
0
264
40
18
22
18
1.91
97044334--97044567
117
2.0
116
92
0
387
39
14
30
16
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97053335--97053382
23
2.1
23
88
7
71
43
6
0
50
1.27
97054946--97055066
62
2.0
62
89
0
188
23
28
26
21
1.99
97056375--97056558
40
4.6
40
88
2
244
26
27
23
21
1.99
97064624--97064825
40
5.1
40
87
4
259
25
27
24
22
2.00
97070435--97070480
19
2.4
18
79
10
56
21
21
13
43
1.86
97074876--97074972
45
2.2
46
88
3
144
31
18
21
27
1.97
97074752--97075279
177
3.0
177
90
0
862
31
18
21
28
1.97
97075118--97075411
130
2.2
132
93
1
493
29
19
21
29
1.97
97074940--97075567
307
2.0
310
91
0
1028
30
18
21
29
1.97
97075360--97075456
45
2.2
46
87
7
137
29
15
23
30
1.95
97075248--97075567
177
1.8
178
93
0
552
30
19
20
30
1.97
97075538--97075759
44
5.1
44
67
16
142
35
22
22
19
1.96
97075535--97075765
84
2.7
84
84
8
277
35
21
23
19
1.96
97078005--97078049
22
2.0
22
95
0
81
48
11
0
40
1.39
97078928--97078995
27
2.4
28
80
4
84
42
33
4
19
1.71
97079538--97079660
51
2.4
52
87
2
169
27
21
11
39
1.87
97080519--97080568
16
3.1
16
79
2
55
58
0
0
42
0.98
97081541--97081578
20
1.9
19
89
5
58
36
0
5
57
1.21
97081886--97081948
9
7.6
9
69
26
50
23
0
19
57
1.41
97081887--97081948
27
2.5
25
87
10
83
24
0
19
56
1.42
97086165--97086216
26
2.0
25
85
3
68
59
5
7
26
1.48
97087083--97087112
15
2.0
15
100
0
60
26
6
0
66
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97087417--97087503
41
2.2
40
82
2
102
66
5
1
26
1.21
97087486--97087557
27
2.6
26
77
12
72
63
0
5
30
1.17
97087519--97087560
23
2.0
22
86
13
61
64
0
4
30
1.14
97091786--97091824
17
2.3
17
95
0
69
30
0
15
53
1.42
97097433--97097470
20
1.9
20
88
0
58
36
2
10
50
1.51
97098692--97098860
86
2.0
86
83
6
218
40
19
7
32
1.80
97098887--97098931
19
2.3
20
77
11
58
62
0
2
35
1.08
97099106--97099205
29
3.4
28
77
8
101
35
4
2
59
1.28
97099123--97099247
19
6.7
19
72
16
84
35
2
0
61
1.15
97099195--97099247
24
2.0
26
86
13
74
33
3
0
62
1.13
97099197--97099250
8
6.5
8
79
8
63
33
1
0
64
1.04
97099162--97099313
9
16.6
9
69
18
75
34
1
1
61
1.18
97099324--97099493
84
2.0
86
84
2
227
34
8
17
39
1.80
97103833--97103895
31
2.0
31
84
6
83
44
12
9
33
1.75
97105779--97105814
13
2.6
14
91
8
56
61
0
0
38
0.96
97111641--97111685
23
2.0
23
82
8
56
37
8
13
40
1.76
97121941--97122332
191
2.0
195
90
3
612
29
17
18
34
1.95
97128650--97128910
112
2.3
110
80
7
292
24
19
17
37
1.94
97132084--97132153
22
3.2
22
68
8
70
51
8
1
38
1.41
97132084--97132271
44
4.5
44
80
15
229
48
9
0
41
1.40
97132095--97132164
22
3.2
22
66
8
61
50
10
1
38
1.45
97132146--97132210
32
2.0
32
100
0
130
41
9
0
49
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97132102--97132254
76
2.0
76
93
0
261
46
9
0
43
1.41
97132935--97132974
18
2.3
18
91
4
64
67
2
7
22
1.28
97133007--97133062
23
2.5
23
83
13
73
62
0
12
25
1.30
97133002--97133062
21
2.8
22
79
16
65
65
0
11
22
1.24
97147704--97148025
113
2.8
114
80
4
375
36
20
17
26
1.94
97149525--97149658
21
6.4
21
66
13
53
48
16
16
18
1.81
97149519--97149624
42
2.5
42
76
10
108
50
16
16
16
1.79
97151316--97151354
18
2.2
18
100
0
78
38
15
15
30
1.88
97151428--97151468
21
2.0
20
86
13
57
48
2
4
43
1.37
97151494--97151579
43
2.0
43
97
0
163
43
11
8
37
1.71
97163553--97163586
12
2.9
12
91
4
52
0
23
0
76
0.79
97170195--97170227
8
4.2
8
92
7
50
45
0
0
54
0.99
97170253--97170296
5
9.0
5
85
9
56
59
2
0
38
1.10
97172079--97172128
26
1.9
26
91
0
82
52
0
4
44
1.20
97172863--97172896
17
2.0
17
88
0
50
64
2
2
29
1.22
97173324--97173367
20
2.2
20
84
11
56
40
11
22
25
1.87
97173606--97173739
67
2.0
67
100
0
268
26
20
16
35
1.94
97181947--97182011
18
3.6
18
70
13
53
12
7
6
73
1.23
97181934--97182008
37
2.0
39
87
10
111
12
6
6
74
1.20
97182053--97182129
25
3.1
25
75
9
77
42
0
5
51
1.24
97182080--97182145
35
1.9
34
90
3
105
42
0
1
56
1.08
97182114--97182183
20
3.4
21
75
13
74
47
1
0
51
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97182128--97182164
19
1.9
19
89
10
58
45
2
0
51
1.15
97182221--97182267
17
2.8
16
84
9
58
46
0
0
53
1.00
97182342--97182445
32
3.2
33
80
12
128
54
1
0
42
1.17
97182405--97182443
20
2.0
20
90
5
62
56
2
0
41
1.13
97182507--97182567
21
3.0
20
90
7
95
60
0
0
39
0.97
97183032--97183065
16
2.1
16
94
0
59
38
17
5
38
1.74
97187472--97187497
3
8.7
3
100
0
52
69
0
0
30
0.89
97187579--97187626
10
4.3
12
72
17
50
56
0
0
43
0.99
97195761--97195798
19
2.0
20
85
15
53
36
0
23
39
1.55
97197723--97197764
21
2.0
21
86
9
59
45
19
9
26
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332