genome.fa.s13.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  151  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49540489--49540713	120	1.9	120	86	3	328	19	20	27	33	1.96
49548523--49548637	40	2.9	40	97	0	212	16	18	30	34	1.93
49551429--49551457	13	2.2	13	100	0	58	31	0	13	55	1.39
49552131--49552189	25	2.2	28	82	8	70	47	3	0	49	1.18
49573417--49573447	12	2.6	12	94	0	53	58	12	12	16	1.64
49573431--49573838	25	15.6	26	69	13	189	46	11	20	22	1.82
49573424--49573554	31	4.4	32	75	15	120	50	12	18	19	1.77
49573457--49573838	50	7.4	50	83	9	439	45	11	20	22	1.83
49573457--49573834	106	3.6	107	83	7	474	45	11	20	22	1.83
49573665--49573767	31	3.5	31	69	15	101	43	10	22	23	1.84
49573955--49574040	27	3.2	26	85	4	109	39	20	20	18	1.93
49574653--49574782	53	2.4	54	87	3	183	25	23	16	35	1.95
49574651--49574782	27	4.9	27	84	1	176	25	22	15	35	1.94
49574771--49574877	27	4.0	27	74	4	90	33	8	22	35	1.84
49576261--49576294	18	1.9	17	88	5	50	32	11	5	50	1.63
49576873--49577252	25	14.7	25	78	9	361	46	13	18	20	1.83
49576904--49577006	19	5.5	18	73	19	61	44	17	20	17	1.87
49576873--49577249	131	2.9	130	86	4	523	46	13	19	20	1.83
49577133--49577252	19	6.4	19	71	22	85	47	13	18	20	1.82
49577154--49577252	31	3.4	30	72	21	102	48	14	17	20	1.81
49576873--49577252	50	7.4	50	82	9	404	46	13	18	20	1.83
49577389--49577470	27	3.0	25	79	13	74	37	18	24	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49578046--49578184	27	5.2	27	86	4	165	27	22	16	33	1.95
49578033--49578147	54	2.1	55	79	7	128	27	20	20	30	1.98
49582164--49582247	43	2.0	43	90	0	132	30	30	20	17	1.96
49584197--49584343	42	3.4	43	77	10	131	29	24	16	29	1.96
49605047--49605158	43	2.6	43	81	8	129	23	16	26	33	1.95
49605624--49605660	17	2.2	17	100	0	74	29	10	29	29	1.91
49610123--49610300	27	6.6	26	80	7	169	29	28	15	26	1.96
49610144--49610299	82	1.9	81	88	3	233	29	28	15	26	1.96
49613889--49613940	16	3.3	16	69	15	54	50	5	0	44	1.26
49613891--49613952	31	2.0	31	100	0	124	45	6	0	48	1.28
49621210--49621267	30	1.9	30	92	0	98	34	12	25	27	1.91
49622750--49622783	13	2.6	13	85	0	50	14	20	52	11	1.73
49629943--49629994	27	1.9	27	88	7	79	32	26	23	17	1.96
49633458--49633516	28	2.1	27	84	3	73	44	0	3	52	1.17
49638123--49638213	39	2.3	41	81	11	116	32	16	25	25	1.96
49638210--49638493	39	7.3	39	91	0	460	20	22	28	28	1.98
49638127--49638478	78	4.5	78	85	4	273	23	21	28	27	1.99
49656949--49657014	29	2.3	29	78	5	80	27	30	13	28	1.94
49659172--49659445	38	7.2	36	71	14	137	22	20	27	29	1.98
49659171--49659436	79	3.5	76	75	14	237	22	21	27	29	1.99
49659323--49659436	39	2.9	39	82	12	137	22	22	27	27	1.99
49679680--49679726	19	2.5	19	93	3	78	59	6	14	19	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49684013--49684263	40	6.3	40	84	5	312	24	19	27	27	1.99
49684013--49684263	119	2.1	120	89	1	398	24	19	27	27	1.99
49691312--49691380	15	4.6	15	78	7	77	11	14	14	59	1.61
49693858--49693896	14	2.6	16	88	8	55	41	2	20	35	1.66
49694083--49694254	45	3.8	45	74	11	131	23	15	27	33	1.95
49694960--49695005	23	2.0	24	91	4	76	41	19	19	19	1.91
49695367--49695532	27	6.1	27	85	1	73	39	18	15	25	1.90
49695388--49695543	54	2.9	53	89	3	233	37	17	17	27	1.93
49695388--49695543	27	5.8	27	83	7	192	37	17	17	27	1.93
49695744--49695770	14	1.9	14	100	0	54	22	29	37	11	1.89
49697813--49697971	42	3.8	42	82	5	196	31	14	23	30	1.94
49703216--49703240	6	4.2	6	100	0	50	16	16	0	68	1.22
49703359--49703454	32	3.0	32	98	0	183	46	13	23	15	1.82
49708984--49709037	21	2.5	22	76	8	58	14	33	31	20	1.93
49723209--49723280	28	2.6	28	88	0	99	30	33	12	23	1.92
49723265--49723378	40	2.8	40	80	2	122	34	23	16	25	1.95
49727984--49728026	16	2.7	16	85	0	59	55	18	16	9	1.67
49728237--49728327	29	3.2	29	89	7	141	27	13	31	27	1.94
49734538--49734653	61	1.9	61	96	0	214	31	19	29	18	1.96
49736206--49736268	28	2.2	28	80	5	74	28	15	31	23	1.96
49741326--49741417	28	3.3	28	89	3	132	20	16	34	28	1.94
49741734--49742099	27	13.7	27	82	2	353	39	20	10	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49741733--49742099	81	4.6	81	84	3	402	38	20	10	29	1.86
49742053--49742112	27	2.2	27	90	0	93	41	16	11	30	1.84
49742068--49742141	27	2.7	27	85	4	87	37	17	17	27	1.92
49748113--49748397	47	6.1	47	92	0	419	31	9	30	27	1.89
49748516--49748594	37	2.1	37	90	0	122	24	18	31	25	1.98
49755775--49755810	11	3.3	11	88	0	54	16	2	0	80	0.83
49758784--49758892	58	1.9	58	86	1	157	27	30	14	27	1.95
49758793--49758905	29	4.0	28	75	8	102	29	30	13	26	1.94
49760304--49760335	16	2.0	16	93	0	55	9	0	34	56	1.32
49764183--49764353	93	1.8	92	94	1	306	22	21	28	28	1.99
49764187--49764360	46	3.8	46	76	13	187	21	20	28	28	1.98
49771754--49771921	47	3.6	46	70	18	132	22	21	27	29	1.99
49771754--49771924	46	3.7	45	71	19	136	21	21	28	29	1.98
49780115--49780163	25	1.9	26	84	12	66	51	8	6	34	1.57
49780220--49780306	33	2.6	33	98	0	165	18	16	16	49	1.80
49782064--49782234	39	4.3	39	84	6	202	25	21	28	25	1.99
49782011--49782234	79	2.8	79	81	7	222	25	20	28	25	1.99
49782091--49782267	79	2.2	80	82	4	200	25	21	28	24	1.99
49789965--49790135	39	4.3	39	84	6	202	25	21	28	25	1.99
49789912--49790135	79	2.8	79	81	7	222	25	20	28	25	1.99
49789992--49790168	79	2.2	80	82	4	200	25	21	28	24	1.99
49793258--49793289	13	2.4	14	85	15	50	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49794129--49794220	40	2.3	39	83	5	114	20	26	16	36	1.93
49795077--49795155	35	2.2	35	93	2	140	39	20	2	37	1.66
49795293--49795421	45	2.9	45	84	2	172	24	28	22	24	1.99
49799578--49799613	12	3.0	12	91	0	54	27	44	19	8	1.79
49800173--49800247	25	3.2	25	70	14	86	36	30	2	30	1.72
49800159--49800254	46	2.1	46	98	0	183	37	30	3	29	1.73
49800802--49800929	44	2.9	44	92	1	213	35	26	17	20	1.95
49804029--49804088	30	2.0	29	87	3	84	30	25	5	40	1.77
49805644--49805721	34	2.3	32	84	4	93	21	21	21	34	1.97
49811691--49811739	26	1.9	25	84	12	64	24	10	12	53	1.69
49822508--49822567	27	2.2	28	82	8	79	28	23	15	33	1.94
49822818--49822889	37	1.9	37	97	0	135	20	12	34	31	1.90
49827281--49827362	24	3.6	23	76	15	71	34	14	12	39	1.84
49827301--49827372	21	3.3	21	78	19	85	31	19	11	37	1.87
49827281--49827372	45	2.1	44	87	2	130	32	17	11	38	1.86
49827464--49827488	13	1.9	13	100	0	50	68	16	0	16	1.22
49827464--49827507	21	2.0	21	86	4	61	59	20	0	20	1.39
49829721--49829789	36	1.9	36	93	0	120	26	18	27	27	1.98
49829762--49829897	49	2.7	49	82	2	173	27	20	24	27	1.99
49829755--49829897	51	2.8	51	81	2	182	25	20	25	27	1.99
49832906--49832970	15	4.4	15	70	16	55	9	12	13	64	1.49
49835378--49835564	49	3.8	49	82	3	232	26	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49835373--49835559	100	1.9	99	94	1	329	25	19	25	28	1.99
49837919--49838107	55	3.5	54	82	6	222	22	24	16	35	1.94
49838092--49838212	47	2.6	47	93	1	199	26	24	14	34	1.93
49846701--49846876	46	3.8	46	78	12	207	21	21	27	29	1.98
49846698--49846868	93	1.8	93	94	0	306	21	21	28	28	1.99
49848454--49848479	11	2.4	11	100	0	52	57	15	0	26	1.38
49862916--49862969	22	2.5	22	81	0	63	22	29	31	16	1.96
49866319--49866449	7	18.0	7	76	18	101	50	32	0	17	1.47
49866318--49866449	22	6.1	21	77	18	121	50	31	0	18	1.47
49866310--49866449	36	3.8	36	82	13	162	50	32	0	17	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332