genome.fa.s13.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  172  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56758870--56758932	30	2.1	30	100	0	126	26	26	19	26	1.99
56763065--56763126	26	2.4	26	100	0	124	46	20	16	16	1.83
56766651--56766691	22	1.9	21	85	5	55	19	24	41	14	1.89
56767832--56767923	47	2.0	47	80	4	105	22	28	19	29	1.98
56767933--56768101	46	3.6	46	76	11	157	23	27	19	28	1.98
56769343--56769375	17	1.9	17	100	0	66	30	24	18	27	1.98
56771142--56771440	40	7.5	39	90	4	415	24	28	24	22	1.99
56774612--56774717	55	1.9	55	100	0	212	30	3	18	47	1.67
56775735--56775913	89	2.0	88	93	1	304	27	13	17	40	1.88
56777033--56777542	126	4.1	126	82	5	569	39	16	15	28	1.89
56777033--56777542	251	2.1	243	82	7	609	39	16	15	28	1.89
56787764--56787964	40	5.0	40	94	0	339	20	21	30	26	1.98
56787953--56788094	43	3.3	42	84	2	176	13	21	31	33	1.92
56791798--56792219	47	9.0	47	92	0	657	34	11	28	25	1.91
56793237--56793290	24	2.2	24	84	12	67	29	37	16	16	1.91
56793786--56793820	18	1.9	18	100	0	70	37	22	5	34	1.78
56802043--56802081	18	2.2	19	90	9	64	10	51	28	10	1.68
56806633--56806668	18	2.0	18	94	0	63	38	8	27	25	1.84
56807881--56807923	21	2.0	21	90	0	68	34	23	9	32	1.87
56809961--56810051	28	3.1	29	85	6	105	37	8	0	53	1.32
56815411--56815527	42	2.8	41	77	13	112	21	17	30	29	1.96
56823795--56823892	27	3.5	28	90	2	135	26	13	27	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56823823--56823904	27	3.0	27	87	5	94	29	12	25	32	1.92
56833311--56833432	42	2.8	43	77	10	133	24	18	27	29	1.98
56833294--56833428	43	3.1	44	75	16	131	24	17	28	29	1.97
56840425--56840455	7	4.4	7	91	0	53	41	3	16	38	1.64
56841241--56841299	22	2.7	21	74	12	57	67	0	0	32	0.91
56841242--56841301	20	2.9	21	75	9	61	68	0	0	31	0.90
56858907--56859158	40	6.3	41	82	6	304	23	20	27	27	1.99
56858907--56859158	120	2.1	120	90	3	402	23	20	27	27	1.99
56866565--56866639	37	2.2	35	81	13	86	24	21	26	28	1.99
56866615--56866768	41	3.7	41	76	12	163	24	21	29	24	1.99
56866589--56866768	84	2.2	79	87	10	249	23	21	28	26	1.99
56871618--56871841	40	5.7	40	88	6	262	25	27	21	25	2.00
56871618--56871841	118	1.9	120	83	7	296	25	27	21	25	2.00
56879575--56879798	40	5.7	39	88	4	274	26	26	21	25	2.00
56882224--56882264	21	1.9	22	85	5	57	41	14	0	43	1.45
56883470--56883499	15	1.9	16	93	6	53	20	20	6	53	1.67
56884671--56884761	44	2.1	44	82	0	110	47	12	12	28	1.76
56885428--56885523	30	3.2	30	63	21	74	36	17	0	45	1.49
56885427--56885554	60	2.1	60	85	5	170	38	14	2	44	1.59
56887746--56887851	56	1.9	56	88	0	158	35	17	1	44	1.60
56887746--56887864	56	2.1	56	83	4	152	36	15	1	46	1.57
56892518--56892657	70	2.0	70	98	0	271	40	22	7	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56900729--56900846	43	2.8	41	73	8	112	25	19	22	33	1.97
56931520--56931573	27	2.0	27	96	0	99	22	24	22	31	1.98
56931557--56931727	46	3.7	46	77	7	157	22	29	18	29	1.98
56932071--56932137	30	2.2	30	81	5	73	47	4	19	28	1.68
56941120--56941166	23	2.0	23	95	0	85	36	17	6	40	1.75
56943561--56943728	46	3.7	44	79	8	135	23	27	20	28	1.99
56943569--56943869	47	6.5	45	77	10	172	23	27	18	30	1.98
56943752--56943869	47	2.5	47	95	1	220	22	27	19	30	1.98
56950735--56950770	8	4.5	8	100	0	72	41	22	25	11	1.86
56950735--56950778	16	2.8	16	92	0	61	43	20	25	11	1.85
56950989--56951103	29	4.0	28	84	2	122	28	15	27	27	1.96
56957888--56958009	27	4.4	28	88	4	167	32	27	12	27	1.92
56966201--56966297	27	3.6	27	97	1	176	31	27	12	27	1.93
56982115--56982239	45	2.8	45	81	0	151	22	13	29	34	1.92
56986161--56986211	26	2.0	26	100	0	102	35	13	23	27	1.93
56988488--56988693	40	5.2	40	89	0	297	28	25	20	24	1.99
56991668--56991935	47	5.7	47	70	21	152	31	8	31	28	1.87
56991706--56991773	33	2.1	33	100	0	136	33	5	29	30	1.81
56991714--56991781	33	2.3	29	85	14	86	33	2	29	33	1.73
56991740--56991935	47	3.9	49	80	13	184	31	8	32	28	1.87
56991770--56991883	57	2.0	57	89	0	174	29	7	30	31	1.86
56992054--56992132	37	2.1	37	88	4	115	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56994021--56994094	29	2.6	29	89	4	105	25	16	32	25	1.96
56994442--56994606	40	4.3	39	82	10	207	25	21	25	27	2.00
56994409--56994606	40	5.2	36	77	15	159	24	22	26	26	2.00
56998280--56998347	33	2.1	33	100	0	136	33	5	29	30	1.81
56998288--56998355	33	2.3	29	85	14	86	33	2	29	33	1.73
56998244--56998396	82	1.9	78	93	5	261	33	7	28	30	1.84
56998344--56998457	57	2.0	57	89	0	174	29	7	30	31	1.86
56998398--56998506	47	2.3	47	95	1	202	28	10	34	26	1.89
56998627--56998705	37	2.1	37	88	4	115	25	18	30	25	1.98
57005225--57005253	11	2.7	11	94	5	51	41	10	0	48	1.37
57006446--57006479	15	2.3	15	89	0	50	52	20	8	17	1.71
57007288--57007347	30	2.0	30	96	0	111	41	20	15	23	1.89
57007638--57007672	16	2.2	16	89	0	52	42	20	8	28	1.81
57011050--57011225	46	3.8	49	78	13	183	29	27	20	22	1.99
57011055--57011225	93	1.8	93	91	0	279	29	28	20	22	1.98
57013425--57013564	7	19.6	7	72	10	50	40	37	0	21	1.53
57013416--57013471	28	2.0	28	89	3	85	35	39	0	25	1.56
57013415--57013462	14	3.4	14	73	2	51	37	37	0	25	1.56
57013418--57013496	28	2.8	29	76	3	79	35	41	0	22	1.54
57013469--57013534	21	3.0	22	78	8	64	42	39	0	18	1.50
57013497--57013559	15	4.3	15	72	11	58	46	34	0	19	1.50
57013602--57013672	7	10.0	7	82	8	65	30	43	0	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57013591--57013643	22	2.4	22	93	0	88	24	45	0	30	1.54
57013719--57013747	14	2.1	14	100	0	58	51	34	0	13	1.42
57014055--57014346	40	7.3	40	84	7	333	31	20	16	31	1.95
57014055--57014328	120	2.3	119	87	4	372	30	21	16	31	1.95
57016162--57016281	39	3.1	39	97	1	224	22	31	25	20	1.98
57022863--57022983	39	3.1	39	92	2	190	22	28	26	22	1.99
57026227--57026278	25	2.1	25	85	3	70	25	21	21	32	1.98
57026484--57026624	27	5.2	26	80	10	149	26	20	17	35	1.95
57026482--57026624	54	2.6	54	82	0	169	25	20	18	35	1.95
57026482--57026651	54	3.1	54	77	5	148	26	18	18	35	1.95
57033157--57033226	6	13.0	5	76	18	54	75	1	5	17	1.06
57033157--57033226	12	5.9	11	75	17	61	75	1	5	17	1.06
57033181--57033226	15	3.1	14	87	12	65	76	0	4	19	0.96
57033180--57033226	20	2.3	21	92	3	78	76	0	4	19	0.95
57036249--57036437	38	4.9	38	92	1	288	20	23	26	29	1.99
57036642--57036702	30	2.0	30	100	0	122	32	16	19	31	1.94
57038640--57038727	46	1.9	46	90	0	131	27	31	22	18	1.97
57045537--57045705	38	4.4	38	82	6	191	23	22	24	29	1.99
57045539--57045725	76	2.4	75	86	5	248	20	21	26	31	1.98
57052672--57052724	15	3.5	15	85	10	56	54	16	15	13	1.71
57069289--57069445	43	3.7	43	81	3	149	33	28	15	22	1.95
57082597--57082805	55	3.9	54	80	6	235	35	16	24	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57082605--57082805	108	1.8	110	88	4	309	34	17	24	22	1.96
57083038--57083077	20	2.0	20	90	0	62	42	0	20	37	1.52
57083044--57083074	16	1.9	16	93	0	53	41	0	22	35	1.54
57084885--57084909	4	6.2	4	100	0	50	24	0	0	76	0.80
57085589--57085626	16	2.4	16	90	0	58	57	21	10	10	1.61
57085839--57085928	29	3.1	28	87	7	128	27	12	28	31	1.93
57088910--57088994	43	2.0	43	90	0	134	25	18	23	31	1.97
57093270--57093492	78	2.8	78	85	7	281	24	21	27	26	1.99
57093270--57093492	40	5.7	40	87	5	287	24	21	27	26	1.99
57093270--57093525	118	2.2	118	82	6	297	25	21	27	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332