genome.fa.s13.2.7.7.80.10.50.1000.319.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  319  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104805755--104805880	30	4.2	30	92	2	200	43	6	23	26	1.77
104807941--104808057	51	2.3	51	92	0	189	29	22	13	35	1.92
104815698--104815797	44	2.3	44	96	0	182	31	22	14	33	1.93
104827091--104827151	11	5.5	11	70	0	50	19	19	8	52	1.71
104827117--104827159	22	2.0	22	85	0	59	25	13	6	53	1.65
104827686--104827764	30	2.6	30	95	2	140	41	5	5	48	1.47
104831927--104831962	13	2.8	13	91	0	54	50	0	2	47	1.15
104841343--104841451	55	2.0	55	96	0	200	37	14	15	32	1.88
104846774--104846808	18	1.9	18	88	0	52	28	11	14	45	1.79
104847081--104847150	23	3.3	22	69	22	69	31	5	18	44	1.73
104847067--104847185	40	3.0	40	94	0	202	31	5	18	45	1.71
104848532--104848580	24	2.0	24	100	0	98	16	8	12	63	1.51
104849211--104849297	33	2.6	33	96	0	165	31	24	24	20	1.98
104862359--104862385	9	3.0	9	100	0	54	0	55	22	22	1.44
104868505--104868564	28	2.1	28	96	0	111	23	18	18	40	1.92
104873190--104873361	85	2.0	85	94	0	299	31	15	22	29	1.95
104873447--104873475	14	2.1	14	100	0	58	44	6	6	41	1.58
104874118--104874303	94	2.0	94	93	0	318	36	14	14	34	1.87
104874336--104874389	20	2.8	19	75	10	56	75	9	1	12	1.11
104875866--104875910	15	2.9	15	90	3	63	48	0	0	51	1.00
104876042--104876129	44	2.0	46	86	8	128	34	25	7	32	1.85
104876119--104876173	16	3.4	16	87	0	83	30	29	5	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104876763--104876827	25	2.6	25	79	15	73	29	3	6	61	1.35
104876636--104877031	195	2.0	200	87	4	581	29	5	7	57	1.48
104880369--104880449	40	2.0	40	95	0	144	53	2	6	38	1.40
104880374--104880440	22	3.2	22	64	23	54	55	1	7	35	1.37
104881616--104881699	30	2.9	28	75	18	82	36	1	3	58	1.23
104881634--104881677	20	2.2	20	88	8	63	38	0	2	59	1.10
104881615--104881744	9	13.7	9	69	18	68	35	1	3	60	1.22
104886728--104886761	18	1.9	17	88	5	50	67	0	32	0	0.91
104886790--104886822	6	5.3	6	92	7	57	78	0	21	0	0.75
104886897--104886935	21	1.9	21	89	5	62	23	0	2	74	0.94
104888964--104888989	13	2.0	13	100	0	52	38	7	38	15	1.76
104889791--104889848	25	2.3	25	80	11	66	51	3	0	44	1.18
104897247--104897392	53	2.7	53	85	6	179	27	16	26	29	1.97
104901228--104901262	15	2.3	15	90	9	54	60	2	0	37	1.12
104901894--104901922	14	2.1	14	100	0	58	51	0	20	27	1.47
104906360--104906402	22	2.0	22	85	0	59	69	13	2	13	1.28
104906785--104906836	27	2.0	26	85	11	70	26	17	7	48	1.74
104908336--104908362	7	3.9	7	100	0	54	59	0	0	40	0.98
104908344--104908387	20	2.3	19	84	4	52	63	2	0	34	1.07
104910766--104911014	50	4.8	50	85	4	284	20	29	24	26	1.99
104910765--104911014	100	2.4	104	88	6	357	20	29	24	26	1.99
104911109--104911140	13	2.5	13	94	0	55	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104911352--104911409	30	1.9	30	85	0	80	31	24	1	43	1.64
104922458--104922507	19	2.6	19	76	20	59	42	0	2	56	1.11
104926614--104926659	20	2.2	21	84	3	58	56	2	0	41	1.11
104928185--104928224	11	3.6	11	89	0	53	80	0	20	0	0.72
104928195--104928229	13	2.7	13	90	0	52	85	0	14	0	0.59
104930357--104930399	12	3.5	12	76	17	52	55	0	0	44	0.99
104930440--104930520	43	1.9	42	94	2	144	50	3	1	44	1.27
104937902--104937939	6	6.3	6	93	0	67	0	18	36	44	1.50
104941505--104941549	20	2.2	20	84	4	54	62	2	6	28	1.33
104943319--104943363	22	2.0	23	82	4	56	46	2	0	51	1.13
104948970--104949028	31	1.9	31	89	0	91	49	13	5	32	1.64
104950658--104950713	4	14.8	4	76	10	55	71	3	25	0	1.02
104963435--104963475	20	2.0	20	86	9	57	78	4	12	4	1.07
104964749--104964795	23	2.0	23	100	0	94	34	4	4	57	1.38
104964753--104964802	23	2.2	23	92	0	82	40	4	2	54	1.31
104965417--104965483	32	2.1	31	83	2	80	43	2	0	53	1.16
104969158--104969223	24	2.7	23	79	9	69	54	1	1	42	1.18
104970732--104970778	22	2.2	20	78	14	51	36	2	8	53	1.44
104976891--104976932	21	2.0	21	86	9	59	40	2	4	52	1.35
104977790--104977852	31	2.2	29	80	11	67	55	3	0	41	1.16
104979754--104980008	110	2.3	110	93	2	431	35	3	18	42	1.66
104983768--104983798	16	1.9	16	93	0	53	41	0	3	54	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104983878--104983908	12	2.6	12	94	0	53	74	0	25	0	0.82
104986582--104986627	21	2.2	21	82	14	60	34	0	2	63	1.07
104987709--104987789	31	2.6	31	80	2	81	30	16	17	35	1.92
104988419--104988452	17	1.9	17	88	5	50	35	0	11	52	1.38
104994299--104994363	29	2.2	30	81	5	71	49	1	3	46	1.27
104995846--104995888	21	2.0	21	100	0	86	27	18	13	39	1.89
105008720--105008772	23	2.3	24	77	6	56	54	3	0	41	1.18
105015106--105015157	24	2.2	24	100	0	104	38	25	3	32	1.74
105026144--105026225	41	2.0	41	88	4	121	58	13	4	23	1.54
105034885--105035134	125	2.0	125	98	0	482	28	17	28	25	1.98
105035989--105036148	85	1.9	83	81	10	191	44	5	5	45	1.49
105041734--105041789	29	1.9	29	88	0	85	37	14	8	39	1.77
105045476--105045526	25	2.0	25	100	0	102	19	19	3	56	1.57
105049762--105049812	25	2.1	24	85	3	66	35	3	1	58	1.28
105050200--105050241	11	3.7	11	87	3	57	69	0	0	30	0.89
105050694--105050730	16	2.2	18	85	9	51	48	0	0	51	1.00
105050692--105050733	16	2.6	16	81	7	50	50	0	0	50	1.00
105051503--105051545	13	3.4	12	81	18	52	48	4	0	46	1.22
105051515--105051582	13	5.2	13	80	7	75	45	4	0	50	1.22
105058405--105058519	30	3.8	30	94	0	203	26	49	3	20	1.65
105067514--105067563	20	2.5	20	96	0	91	44	20	8	28	1.79
105067692--105068395	71	9.5	71	73	13	512	28	17	22	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105067961--105067988	14	2.0	14	100	0	56	14	21	7	57	1.61
105067975--105068671	73	9.3	72	78	12	717	27	17	21	32	1.96
105068417--105068444	14	2.0	14	100	0	56	14	21	7	57	1.61
105068451--105068671	72	3.0	71	89	5	336	27	18	22	32	1.97
105068651--105068679	14	2.1	14	100	0	58	13	13	6	65	1.45
105068189--105069231	237	4.4	238	81	13	1227	27	16	21	34	1.95
105068748--105068911	86	1.9	87	89	3	260	25	15	21	36	1.94
105068509--105069229	160	4.5	160	80	8	774	27	16	21	34	1.95
105067975--105069231	165	8.1	154	77	13	906	27	16	21	33	1.95
105068830--105069130	73	4.0	73	75	10	293	27	16	21	33	1.95
105069214--105069248	17	2.1	17	89	10	54	11	17	5	65	1.43
105069335--105069445	54	2.1	54	91	0	177	30	12	15	41	1.84
105069383--105069632	75	3.3	74	81	6	270	25	18	20	36	1.95
105069615--105069658	13	3.3	13	81	6	52	18	13	4	63	1.46
105069615--105069677	14	4.5	14	82	7	65	22	12	3	61	1.45
105069642--105069674	15	2.2	15	94	0	57	21	9	0	69	1.15
105070419--105070594	30	5.8	30	87	4	264	25	48	3	22	1.66
105070419--105070591	91	1.9	91	89	2	267	24	48	3	23	1.66
105072587--105072625	17	2.2	18	86	4	53	48	2	5	43	1.38
105073252--105073285	17	2.0	17	88	11	52	47	2	0	50	1.16
105074369--105074427	28	2.1	28	96	3	111	59	3	10	27	1.46
105081417--105081458	22	2.0	20	90	9	66	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105086203--105086248	23	2.0	23	87	8	67	67	6	10	15	1.40
105090948--105091034	40	2.1	41	85	2	113	65	9	2	22	1.33
105095871--105095900	3	10.0	3	100	0	60	33	0	0	66	0.92
105099194--105099236	18	2.4	18	80	0	50	27	0	4	67	1.10
105099592--105099651	26	2.4	24	83	8	75	68	3	0	28	1.05
105099622--105099680	21	2.8	22	85	7	70	69	6	0	23	1.12
105113013--105113073	13	4.4	15	72	14	51	50	0	0	49	1.00
105113371--105113413	20	2.2	20	79	12	52	46	4	2	46	1.36
105113374--105113413	19	2.1	19	85	4	53	47	5	2	45	1.38
105113351--105113494	67	2.1	67	82	9	170	42	5	4	47	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332