Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  323  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106125638--106125704
3
22.7
3
73
14
59
61
0
4
34
1.16
106125638--106125695
21
2.8
22
85
10
70
62
0
5
32
1.18
106126031--106126089
26
2.2
27
80
17
70
55
6
3
33
1.43
106126111--106126168
27
2.1
27
100
0
116
44
0
17
37
1.49
106129089--106129198
42
2.6
42
82
0
130
40
14
24
20
1.89
106132914--106132967
26
2.1
26
82
6
65
24
12
24
38
1.90
106132931--106133006
26
2.8
27
84
4
91
27
10
22
39
1.87
106134452--106134559
26
4.2
26
93
0
189
36
24
7
32
1.83
106135795--106135844
20
2.5
20
86
0
64
56
10
12
22
1.65
106135850--106136051
3
66.7
3
71
12
101
59
2
8
28
1.42
106135883--106136051
15
11.3
15
71
10
114
60
1
8
28
1.36
106135932--106135996
31
2.1
31
83
11
80
64
3
7
24
1.34
106137268--106137318
21
2.4
21
93
0
93
39
27
3
29
1.74
106141337--106141445
42
2.6
42
86
5
141
26
38
21
13
1.91
106142424--106142761
46
7.3
46
91
0
444
21
22
15
40
1.91
106144541--106144585
11
3.9
11
83
11
63
60
2
0
37
1.09
106144534--106144586
24
2.2
24
82
0
70
64
1
0
33
1.05
106145571--106145659
42
2.2
42
85
4
119
46
20
17
15
1.85
106145588--106145690
42
2.5
42
81
0
116
46
19
19
14
1.84
106148090--106148130
19
2.2
19
86
4
57
43
7
36
12
1.70
106151329--106151618
160
1.8
161
81
4
370
44
3
10
41
1.56
106152786--106152845
18
3.6
18
73
17
74
33
5
16
45
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106162599--106162637
17
2.2
19
90
9
64
64
12
0
23
1.28
106164677--106164834
80
2.0
80
92
5
266
46
13
13
25
1.80
106169491--106169517
11
2.5
11
100
0
54
62
22
0
14
1.31
106174724--106174762
17
2.2
18
86
9
53
20
0
12
66
1.24
106182338--106182368
12
2.6
12
100
0
62
29
9
12
48
1.73
106185230--106185490
47
5.2
47
77
14
159
32
28
14
24
1.94
106185248--106185491
54
4.8
52
83
7
224
31
28
15
25
1.95
106185330--106185491
54
3.0
54
90
1
238
32
27
14
25
1.95
106189776--106189987
47
4.3
47
74
9
160
31
27
16
24
1.96
106193601--106193757
43
3.7
43
76
13
171
24
17
27
30
1.97
106193601--106193758
84
1.9
84
84
5
212
24
17
27
31
1.97
106194149--106194186
16
2.4
17
83
16
55
39
44
7
7
1.63
106194238--106194308
35
2.0
35
100
0
142
16
47
11
23
1.79
106194256--106194335
34
2.3
35
84
2
99
22
50
10
17
1.76
106194648--106194679
8
3.9
8
92
8
55
75
3
0
21
0.95
106207114--106207220
40
2.6
40
79
8
108
42
16
26
14
1.86
106207984--106208154
66
2.5
69
84
4
206
29
14
23
32
1.94
106207984--106208580
54
8.9
66
69
18
228
28
16
21
33
1.95
106207984--106208555
201
2.9
195
81
12
613
28
16
21
33
1.95
106208374--106208704
72
4.4
74
84
8
411
30
17
21
30
1.96
106209586--106209652
35
1.9
35
100
0
134
17
50
11
19
1.77
106209601--106209680
34
2.3
35
84
2
99
22
51
10
16
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106209993--106210024
8
3.9
8
92
8
55
75
3
0
21
0.95
106216501--106216705
26
7.7
26
74
4
151
29
5
4
59
1.42
106216711--106216800
21
3.9
24
76
15
84
30
10
2
57
1.43
106216711--106216784
22
3.4
23
76
14
77
28
8
2
60
1.39
106216717--106216826
44
2.5
43
80
12
127
27
9
2
60
1.40
106216866--106216908
21
2.0
21
91
8
70
39
9
0
51
1.34
106220867--106220926
18
3.2
18
79
9
50
30
1
5
63
1.25
106220867--106220967
19
5.5
19
72
13
68
27
1
6
63
1.31
106222801--106222880
40
2.0
40
100
0
160
25
20
22
32
1.98
106223103--106223150
20
2.5
20
86
3
62
66
2
4
27
1.21
106223174--106223203
15
2.0
15
93
0
51
40
10
0
50
1.36
106223783--106223826
10
4.2
11
86
13
58
9
6
0
84
0.79
106223795--106223827
17
1.9
17
88
11
50
15
6
0
78
0.93
106223774--106223830
10
5.5
11
82
17
52
10
8
0
80
0.90
106223782--106223831
20
2.5
20
81
18
59
12
8
0
80
0.92
106224757--106224825
13
5.0
14
77
19
74
78
0
1
20
0.83
106224759--106224823
7
8.9
8
79
16
61
78
0
1
20
0.83
106224757--106224826
22
3.3
22
82
4
81
78
0
1
20
0.83
106224758--106224826
8
8.4
8
80
16
63
79
0
1
18
0.80
106224758--106224826
15
4.2
16
78
14
70
79
0
1
18
0.80
106225457--106225481
11
2.3
11
100
0
50
32
24
8
36
1.84
106229384--106229508
40
3.1
40
93
2
207
24
22
26
27
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106234510--106234539
15
2.0
15
93
0
51
40
10
0
50
1.36
106236666--106236743
40
2.0
40
94
0
138
35
5
20
38
1.75
106244568--106244626
29
2.0
30
86
3
84
27
11
22
38
1.89
106248393--106248693
128
2.3
130
77
6
299
36
20
17
24
1.95
106256108--106256214
28
3.8
28
88
0
133
30
26
10
32
1.89
106261175--106261329
28
5.5
28
69
3
121
29
32
19
18
1.96
106261145--106261331
57
3.2
57
90
1
284
28
34
17
19
1.95
106261145--106261301
29
5.4
29
68
4
111
29
35
17
18
1.94
106263952--106264007
20
2.8
20
83
2
69
33
23
16
26
1.95
106268707--106268759
28
1.9
27
88
3
79
24
26
20
28
1.99
106268684--106268802
62
1.9
61
83
11
154
27
26
19
26
1.99
106269917--106270154
41
5.8
41
97
1
442
30
23
19
26
1.98
106277569--106277799
41
5.8
41
95
4
388
29
23
19
27
1.99
106277569--106277799
79
2.9
80
93
6
391
29
23
19
27
1.99
106287841--106288075
40
5.8
41
93
5
399
31
23
19
26
1.98
106287852--106288075
81
2.8
81
96
3
409
31
22
19
26
1.97
106289170--106289195
13
2.0
13
100
0
52
69
15
0
15
1.20
106293482--106293529
14
3.2
14
77
11
51
58
12
14
14
1.64
106303250--106303357
26
4.2
26
93
0
189
36
24
7
32
1.83
106304950--106305020
23
3.0
23
69
15
56
50
2
0
46
1.16
106307279--106307317
16
2.5
15
84
8
51
48
7
2
41
1.45
106307751--106307858
26
4.2
26
91
0
180
32
8
24
35
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106310902--106310979
21
3.8
21
75
13
81
58
3
3
33
1.34
106310861--106310979
59
2.0
62
83
8
156
57
5
5
31
1.42
106310891--106310949
11
5.5
11
76
6
59
57
5
5
32
1.42
106311944--106311980
18
2.0
20
84
10
51
8
13
13
64
1.48
106312764--106312875
44
2.5
44
88
0
170
25
30
20
23
1.98
106312984--106313693
89
8.0
88
87
5
981
36
19
17
26
1.93
106313023--106313680
176
3.7
177
95
1
1153
35
19
17
27
1.94
106313325--106313351
14
1.9
14
100
0
54
51
7
25
14
1.68
106312984--106313680
265
2.6
265
87
5
1007
36
19
17
26
1.94
106313611--106313749
75
1.9
73
86
3
197
32
21
14
31
1.93
106314545--106314660
42
2.8
42
89
5
164
14
25
15
44
1.84
106328515--106328570
22
2.5
22
82
0
58
57
30
1
10
1.43
106328634--106328664
14
2.2
14
100
0
62
12
51
16
19
1.76
106329614--106329677
3
21.0
3
75
15
60
29
3
3
64
1.24
106329627--106329673
23
2.1
23
84
4
60
27
2
4
65
1.22
106329853--106329990
3
46.0
3
70
11
95
29
9
0
60
1.33
106330089--106330223
3
44.3
3
67
15
55
27
9
2
60
1.40
106330114--106330162
20
2.5
20
86
0
62
30
8
0
61
1.25
106330089--106330152
23
2.8
22
81
6
65
28
9
0
62
1.26
106334338--106334371
11
3.0
11
91
4
50
0
26
0
73
0.83
106334436--106334474
16
2.4
17
91
8
64
51
0
0
48
1.00
106335891--106335963
33
2.2
33
95
0
128
12
31
5
50
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106340976--106341008
16
2.1
16
94
5
59
21
0
0
78
0.75
106342765--106342798
16
2.1
16
89
10
52
52
5
0
41
1.25
106346837--106346976
27
5.2
28
88
5
175
35
22
24
18
1.96
106347391--106347420
16
1.9
15
93
6
51
3
20
23
53
1.60
106348590--106348699
26
4.2
26
97
0
193
36
23
5
34
1.78
106353563--106353600
16
2.5
15
87
8
58
28
5
7
57
1.49
106353867--106353923
23
2.6
22
79
20
66
28
7
3
61
1.39
106353890--106353948
32
1.9
29
83
16
75
23
8
3
64
1.37
106353966--106354001
3
12.0
3
93
0
63
33
2
0
63
1.08
106355466--106355521
26
2.2
26
100
0
112
30
7
26
35
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332