genome.fa.s13.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  147  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48295214--48295258	22	2.0	22	91	0	72	26	20	15	37	1.92
48297549--48297607	29	2.0	31	80	12	70	38	0	20	40	1.53
48297657--48297682	13	2.0	13	100	0	52	23	15	38	23	1.92
48299919--48300273	46	7.6	46	83	5	306	25	18	29	26	1.98
48299968--48300225	138	1.9	141	85	7	366	25	17	31	26	1.97
48306111--48306474	45	7.9	45	83	8	398	25	19	29	25	1.99
48306111--48306464	92	3.8	92	83	9	409	25	20	29	25	1.99
48306111--48306464	137	2.6	136	85	10	427	25	20	29	25	1.99
48311077--48311205	46	2.8	46	91	2	206	18	20	30	30	1.97
48322883--48322916	17	2.1	16	88	5	50	47	0	20	32	1.51
48333518--48333716	51	3.9	51	94	2	330	27	25	14	32	1.95
48333752--48333851	24	4.0	24	88	10	155	24	22	16	38	1.93
48333740--48333858	52	2.3	52	94	0	211	25	24	15	35	1.94
48333740--48333852	24	4.3	26	84	13	153	23	24	15	36	1.93
48335952--48336010	28	2.1	28	93	0	100	35	20	6	37	1.79
48338769--48338934	43	3.9	42	74	8	147	27	17	23	31	1.97
48339096--48339147	24	2.1	26	82	7	63	44	1	23	30	1.64
48342697--48342872	48	3.7	48	87	5	248	27	27	18	26	1.98
48348230--48348370	27	5.2	27	87	0	210	38	19	17	24	1.93
48348233--48348394	54	3.0	54	85	0	209	36	19	19	24	1.95
48348230--48348396	27	6.2	27	85	0	181	37	19	19	24	1.94
48348226--48348396	81	2.1	81	85	0	243	37	18	19	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48350086--48350144	18	3.3	18	72	9	57	40	16	18	23	1.91
48351170--48351239	27	2.6	27	95	2	113	31	28	12	27	1.93
48351170--48351265	28	3.4	28	89	2	131	32	28	12	27	1.93
48359179--48359248	27	2.6	27	95	2	113	31	28	12	27	1.93
48359179--48359276	28	3.5	28	90	2	135	31	28	13	26	1.94
48363958--48364240	6	45.7	6	66	17	116	48	14	18	19	1.82
48363967--48364060	37	2.5	37	85	0	125	47	11	20	20	1.80
48363981--48364147	62	2.7	62	83	0	217	49	14	17	19	1.80
48364046--48364116	37	1.9	37	85	0	97	49	18	16	15	1.80
48364077--48364240	25	6.6	25	82	0	184	46	15	18	18	1.83
48364077--48364244	50	3.4	50	88	0	246	47	14	18	19	1.82
48364386--48364469	27	3.1	26	84	6	105	39	22	20	17	1.92
48364993--48365056	27	2.4	26	74	7	65	37	25	18	18	1.94
48365036--48365170	27	5.0	27	82	3	155	25	20	17	36	1.95
48370558--48370601	22	2.0	22	100	0	88	22	9	27	40	1.84
48373989--48374024	17	2.1	17	100	0	72	33	30	13	22	1.93
48379425--48379490	31	2.1	31	85	0	87	53	19	10	16	1.72
48379728--48379775	21	2.3	20	82	10	60	4	45	20	29	1.70
48380186--48380214	13	2.1	14	93	6	51	55	10	0	34	1.34
48382056--48382108	21	2.6	21	84	3	63	43	32	0	24	1.55
48382964--48383039	40	1.9	40	86	5	109	30	19	21	28	1.97
48384940--48385029	45	2.0	44	91	2	144	28	13	21	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48396443--48396891	20	23.8	20	66	19	137	30	6	10	53	1.59
48396505--48396593	19	4.6	19	70	18	67	25	3	10	60	1.44
48396496--48396611	38	3.0	39	75	9	121	27	4	10	57	1.50
48396511--48396941	57	7.6	56	71	17	196	30	7	9	52	1.60
48396785--48396873	19	4.6	19	70	18	67	25	3	10	60	1.44
48396723--48396891	38	4.4	39	72	10	125	28	4	10	55	1.54
48396443--48397011	280	2.0	280	99	0	1129	30	6	9	52	1.60
48398147--48398185	5	7.8	5	82	0	51	15	7	0	76	0.99
48398148--48398185	20	1.9	20	88	0	58	15	7	0	76	1.01
48401717--48401837	10	12.0	10	65	20	56	61	2	3	33	1.26
48401713--48401760	18	2.5	20	83	16	66	66	4	0	29	1.10
48401780--48401837	29	2.0	30	83	10	75	58	1	1	37	1.18
48401844--48401891	21	2.3	21	82	10	62	54	10	0	35	1.35
48401846--48401897	21	2.4	22	80	6	61	53	11	0	34	1.37
48401864--48401947	37	2.2	37	81	6	89	59	5	1	33	1.29
48402370--48402504	9	14.6	9	67	17	62	36	4	2	56	1.35
48405891--48405919	14	2.1	14	100	0	58	41	13	24	20	1.89
48405982--48406082	52	1.9	52	93	0	175	23	15	27	32	1.95
48407861--48407898	2	19.0	2	100	0	76	50	50	0	0	1.00
48413952--48414030	37	2.1	37	88	4	115	25	30	18	25	1.98
48414149--48414637	47	10.4	47	94	0	834	29	29	8	32	1.87
48420891--48420950	27	2.3	27	85	2	77	21	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48424825--48424882	25	2.4	25	91	2	91	36	3	37	22	1.71
48425724--48425763	8	5.0	8	87	0	53	45	22	25	7	1.78
48426180--48426291	27	4.2	26	82	7	125	16	23	22	37	1.94
48426183--48426289	54	2.0	54	87	3	153	17	23	20	38	1.93
48427566--48427718	39	3.9	39	92	0	252	24	20	27	27	1.99
48427566--48427746	78	2.3	78	87	1	256	24	21	27	26	1.99
48437211--48437378	47	3.6	47	72	11	146	23	30	20	25	1.99
48437163--48437381	94	2.4	91	80	5	226	25	29	20	25	1.99
48437214--48437422	94	2.2	94	76	3	213	23	31	19	25	1.98
48438690--48438718	14	2.0	15	93	6	51	27	0	20	51	1.47
48439803--48439904	43	2.4	43	83	4	118	24	17	24	33	1.96
48441026--48441076	26	2.0	26	96	0	93	49	3	15	31	1.63
48444520--48444615	45	2.1	45	88	0	138	27	12	23	36	1.91
48444545--48444644	45	2.2	45	87	0	146	25	13	28	34	1.93
48447213--48447369	43	3.7	41	76	9	138	26	19	23	30	1.98
48452514--48452702	40	4.7	40	91	2	308	25	26	21	25	2.00
48452491--48452702	80	2.7	79	90	3	320	24	26	21	26	1.99
48456124--48456173	25	2.0	25	88	0	73	22	16	30	32	1.95
48459026--48459093	29	2.3	29	85	5	93	27	30	13	27	1.94
48458916--48459241	173	1.9	173	94	1	573	31	23	14	30	1.94
48459194--48459272	29	2.7	30	82	13	110	29	30	15	25	1.96
48461401--48461534	44	3.1	43	77	12	123	23	15	25	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48461431--48461545	42	2.7	42	77	10	126	26	15	23	33	1.95
48465440--48465547	56	1.9	55	90	1	171	36	7	14	41	1.74
48466575--48466608	10	3.3	10	91	4	50	47	0	0	52	1.00
48469301--48469362	30	2.1	30	93	0	106	25	16	20	37	1.93
48475841--48475966	28	4.5	28	92	2	191	26	12	27	32	1.93
48475841--48475966	55	2.2	57	90	2	193	26	12	27	32	1.93
48475869--48475979	28	4.0	27	91	3	143	29	11	25	33	1.91
48481919--48482096	27	6.6	26	80	7	169	29	28	15	26	1.96
48481940--48482095	82	1.9	81	88	3	233	29	28	15	26	1.96
48489922--48490098	27	6.6	27	83	4	205	29	28	15	27	1.96
48489922--48490098	55	3.3	53	83	4	212	29	28	15	27	1.96
48489942--48490097	82	1.9	81	88	3	233	29	28	15	26	1.96
48495468--48495593	28	4.5	28	92	2	191	26	12	27	32	1.93
48495468--48495593	55	2.2	57	90	2	193	26	12	27	32	1.93
48495496--48495606	28	4.0	27	91	3	143	29	11	25	33	1.91
48499613--48499685	28	2.6	29	84	6	96	27	30	16	26	1.97
48499613--48499699	28	3.1	28	81	6	95	26	32	16	25	1.96
48503594--48503673	29	2.8	28	83	7	108	28	35	13	22	1.92
48503594--48503673	28	2.8	28	83	7	108	28	35	13	22	1.92
48510365--48510389	8	3.1	8	100	0	50	36	28	0	36	1.58
48511784--48511880	45	2.2	45	81	3	115	40	16	18	24	1.91
48511904--48512014	46	2.5	45	77	2	125	46	13	21	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48516961--48517003	23	2.0	23	81	9	54	44	16	6	32	1.74
48516993--48517071	34	2.3	34	95	0	140	46	17	5	30	1.70
48519251--48519279	14	2.0	15	93	6	51	51	20	0	27	1.47
48521700--48521845	29	5.1	29	84	2	170	28	28	14	28	1.95
48532536--48532668	29	4.7	29	86	1	162	27	30	14	28	1.95
48535665--48535936	48	5.7	48	77	3	289	26	18	28	26	1.98
48535654--48535938	95	3.0	95	89	3	419	27	17	27	27	1.98
48537859--48537897	16	2.4	17	91	4	62	48	35	5	10	1.59
48539731--48539875	40	3.6	40	85	4	193	25	24	26	23	2.00
48549205--48549241	19	1.9	19	88	0	56	32	13	35	18	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332