genome.fa.s13.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  124  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40330721--40331212	54	9.1	53	72	9	275	39	20	7	32	1.80
40330721--40331005	81	3.5	79	80	7	315	41	19	7	31	1.78
40330721--40331223	27	18.6	27	76	9	194	39	20	7	32	1.80
40331181--40331362	54	3.4	53	79	13	185	36	17	18	28	1.93
40331154--40331378	81	2.8	81	82	2	274	36	17	18	28	1.93
40331208--40331378	27	6.3	27	86	2	236	35	16	21	26	1.94
40331829--40331893	22	3.0	22	75	8	69	23	23	20	33	1.97
40332052--40332126	27	2.8	27	87	0	96	16	24	21	38	1.92
40332286--40332373	6	14.3	6	73	13	72	20	19	13	46	1.83
40332276--40332373	31	3.2	31	92	0	151	20	19	13	46	1.83
40332326--40332379	12	4.4	12	77	13	56	20	20	11	48	1.80
40336582--40336621	21	2.0	20	90	5	62	12	40	27	20	1.88
40348534--40348585	10	5.0	10	76	17	52	36	30	9	23	1.87
40348529--40348590	32	1.9	32	93	0	106	38	29	9	22	1.86
40358434--40358648	40	5.4	40	82	7	217	25	27	21	25	1.99
40358434--40358648	79	2.7	80	84	7	253	25	27	21	25	1.99
40360670--40360760	43	2.1	43	83	2	112	30	26	16	26	1.97
40364606--40364644	19	2.1	19	85	9	53	23	5	5	66	1.32
40364657--40364688	15	2.1	15	94	5	55	31	0	0	68	0.90
40364657--40364710	18	3.1	17	75	25	51	25	3	0	70	1.04
40364815--40364856	4	10.2	4	94	5	75	23	2	0	73	0.94
40367498--40367561	24	2.6	25	87	4	87	32	31	15	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40367585--40367634	24	2.1	24	88	0	73	32	30	12	26	1.92
40367590--40367965	94	4.0	94	96	0	680	39	19	11	30	1.86
40371513--40371552	19	2.0	20	85	4	55	22	25	10	42	1.84
40373805--40373843	19	2.1	19	85	9	53	23	5	5	66	1.32
40373860--40373897	3	12.7	3	89	10	60	34	0	0	65	0.93
40374073--40374107	18	2.0	17	88	5	52	25	8	8	57	1.57
40388730--40388782	16	3.3	16	75	0	61	49	11	20	18	1.78
40389750--40389847	27	3.5	28	92	2	153	27	12	27	32	1.92
40389750--40389860	27	4.0	27	84	6	116	29	11	25	33	1.91
40389750--40389861	28	4.0	27	86	6	125	29	11	25	33	1.91
40394706--40394735	16	1.9	16	93	6	53	33	23	0	43	1.54
40394893--40395227	50	6.6	50	77	5	282	30	25	17	27	1.97
40402087--40402155	35	2.0	35	100	0	138	31	14	5	47	1.68
40402288--40402317	16	1.9	15	93	6	51	33	23	0	43	1.54
40402529--40402764	50	4.7	50	79	4	235	30	26	17	25	1.97
40402578--40402759	101	1.8	101	90	2	294	28	25	19	26	1.99
40406313--40406374	32	1.9	32	90	0	97	32	14	9	43	1.78
40429965--40430174	48	4.5	48	81	7	227	31	20	26	21	1.98
40430000--40430174	94	1.9	94	92	0	296	32	20	26	21	1.97
40430197--40430324	49	2.6	49	83	2	159	28	21	27	22	1.99
40431671--40431726	21	2.7	21	91	0	94	10	32	30	26	1.90
40438677--40438709	16	2.0	17	88	5	50	21	3	6	69	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40439540--40439588	26	2.0	24	88	8	71	63	6	0	30	1.19
40439567--40439614	21	2.3	20	82	7	51	70	8	0	20	1.12
40439588--40439652	35	1.9	33	81	12	78	63	9	0	27	1.25
40439664--40439696	15	2.1	16	88	11	50	69	0	0	30	0.88
40440103--40440141	14	2.7	15	84	8	53	51	0	0	48	1.00
40445397--40445442	23	2.0	22	83	4	56	43	2	13	41	1.55
40454989--40455036	25	1.9	25	87	8	71	43	4	14	37	1.65
40457376--40457441	33	2.0	33	100	0	132	45	9	6	39	1.61
40463225--40463403	88	2.0	88	94	0	313	28	19	14	37	1.91
40466869--40467024	68	2.2	68	78	13	158	20	28	16	34	1.94
40470347--40470447	39	2.5	40	90	7	154	23	30	21	23	1.99
40472798--40473251	47	9.6	47	93	1	721	32	8	29	29	1.87
40492147--40492302	68	2.2	68	78	13	158	20	28	16	34	1.94
40496631--40496738	26	4.2	26	95	0	198	36	25	6	31	1.82
40498460--40498546	39	2.2	39	93	0	147	21	22	28	26	1.99
40505846--40506203	47	7.6	47	93	1	581	29	29	8	33	1.86
40507891--40507915	13	1.9	13	100	0	50	36	16	16	32	1.90
40512457--40512515	26	2.2	26	90	3	91	44	20	23	11	1.85
40512470--40512519	26	1.9	26	100	0	100	42	20	24	14	1.88
40515447--40515770	45	6.8	48	80	10	312	26	18	29	25	1.98
40515456--40515719	45	5.7	45	83	9	332	25	18	29	25	1.98
40515694--40515800	48	2.2	50	83	8	132	29	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40517169--40517276	54	2.0	54	98	0	207	28	9	21	40	1.84
40517947--40518020	34	2.2	34	85	4	96	22	28	22	25	1.99
40520308--40520428	39	3.1	39	87	0	179	24	28	23	23	2.00
40522102--40522143	20	2.2	19	86	4	57	16	9	0	73	1.08
40538477--40538628	72	2.1	72	87	2	216	36	20	19	23	1.95
40538516--40538612	37	2.7	35	72	12	88	36	24	16	22	1.94
40538516--40538629	35	3.2	35	71	9	113	37	21	16	24	1.93
40545520--40545597	31	2.5	32	91	2	122	25	23	26	24	2.00
40553156--40553319	43	3.9	41	74	12	118	29	15	23	31	1.95
40563505--40563687	79	2.3	81	84	7	232	25	27	22	24	2.00
40563484--40563687	40	5.1	40	82	8	238	25	27	22	24	2.00
40571671--40571853	79	2.3	81	84	7	232	25	27	22	24	2.00
40571650--40571853	40	5.1	40	82	8	238	25	27	22	24	2.00
40578154--40578250	27	3.5	28	87	2	124	32	27	12	26	1.92
40578700--40578726	12	2.2	12	100	0	54	40	0	7	51	1.30
40583350--40583376	14	1.9	14	100	0	54	29	14	11	44	1.80
40586673--40586711	21	1.9	20	89	5	60	46	20	0	33	1.51
40587972--40588107	69	2.0	67	84	5	175	37	19	12	30	1.89
40600078--40600102	8	3.1	8	100	0	50	24	0	0	76	0.80
40604136--40604167	8	4.0	8	100	0	64	25	0	0	75	0.81
40608609--40608642	16	2.1	17	88	5	52	38	5	17	38	1.74
40609532--40609570	20	2.0	20	89	0	60	43	20	2	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40609719--40609820	23	4.3	23	82	3	105	35	20	23	20	1.96
40609719--40609820	24	4.2	24	81	8	102	35	20	23	20	1.96
40612234--40612347	15	7.7	14	66	23	56	18	27	35	19	1.95
40612226--40612353	30	4.3	30	95	0	238	16	25	35	21	1.94
40614532--40614613	40	2.0	40	92	0	137	54	19	3	21	1.59
40615101--40615140	14	2.7	15	88	7	55	25	12	2	60	1.45
40615508--40615563	27	2.1	27	100	0	112	60	21	14	3	1.49
40615558--40615605	23	2.1	23	100	0	96	35	12	14	37	1.84
40620422--40620453	15	2.2	14	94	5	55	6	15	9	68	1.36
40621030--40621094	20	3.4	19	76	19	64	67	0	7	24	1.16
40621941--40621983	13	3.5	13	75	18	56	48	13	0	37	1.43
40621941--40621992	23	2.3	23	100	0	104	48	13	0	38	1.43
40621941--40621998	23	2.6	23	91	2	73	50	12	0	37	1.40
40629825--40629863	10	3.6	10	81	18	51	48	10	0	41	1.37
40629812--40629863	23	2.3	23	93	6	88	48	11	0	40	1.40
40640993--40641971	484	2.0	486	90	1	1563	42	15	8	33	1.78
40644629--40644952	50	6.7	50	79	10	334	26	19	29	23	1.98
40644631--40644952	95	3.3	95	79	11	320	27	19	30	23	1.98
40649272--40649327	27	2.1	27	86	0	76	50	10	10	28	1.71
40660290--40660451	39	4.1	39	84	4	148	31	29	20	17	1.96
40660307--40660485	39	4.5	39	87	2	216	30	27	22	20	1.98
40669797--40670760	482	2.0	482	92	0	1595	26	23	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40673601--40673683	41	2.0	41	84	6	107	37	2	1	59	1.19
40673651--40673690	17	2.2	19	86	8	57	42	2	0	55	1.13
40673596--40673694	41	2.5	39	76	14	103	41	2	2	54	1.23
40673640--40673698	17	3.1	19	74	20	52	45	1	0	52	1.10
40678663--40678697	18	1.9	19	88	11	56	45	0	2	51	1.16
40688346--40688392	23	2.0	23	100	0	94	25	12	14	46	1.80
40689301--40689338	18	2.1	18	85	9	51	39	2	0	57	1.12
40695951--40696000	26	1.9	26	91	0	82	32	16	12	40	1.84
40698647--40698680	16	2.2	16	89	5	52	29	5	11	52	1.61
40709390--40709429	20	2.0	20	100	0	80	35	20	25	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332