genome.fa.s13.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  123  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39995153--39995295	50	2.8	51	92	3	236	27	18	25	27	1.98
39995887--39995925	21	1.9	21	89	5	62	53	5	5	35	1.45
40005592--40005690	24	4.1	24	89	0	144	44	25	17	13	1.84
40008244--40008341	20	4.9	20	67	14	67	14	28	19	37	1.91
40008221--40008341	40	3.0	40	90	0	197	15	28	19	37	1.92
40010256--40010307	26	2.0	26	96	0	95	28	34	23	13	1.92
40010460--40010511	26	2.0	26	96	0	95	28	34	23	13	1.92
40010225--40010589	103	3.6	102	94	2	610	30	29	20	19	1.97
40017367--40017418	26	2.0	26	96	0	95	28	34	23	13	1.92
40017336--40017699	102	3.6	101	94	2	606	30	29	20	19	1.97
40017570--40017621	26	2.0	26	96	0	95	28	34	23	13	1.92
40023119--40023185	22	3.0	22	82	4	73	40	19	28	11	1.87
40028268--40028311	15	2.9	15	80	6	52	43	2	13	40	1.57
40028409--40028488	32	2.9	27	73	22	67	52	0	0	47	1.00
40028406--40028478	32	2.4	31	80	15	80	53	0	0	46	1.00
40028629--40028739	5	22.2	5	96	2	197	61	0	0	38	0.96
40029102--40029154	25	2.1	25	86	6	72	35	1	5	56	1.34
40032587--40032749	46	3.6	45	81	9	163	24	30	17	26	1.97
40034001--40034121	46	2.6	46	94	0	206	33	19	25	21	1.96
40041294--40041336	19	2.2	20	83	4	52	34	2	20	41	1.65
40041788--40041956	48	3.6	48	75	9	175	29	20	26	24	1.99
40042555--40042672	54	2.2	55	83	4	141	26	27	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40043422--40043785	47	7.7	46	74	11	186	22	29	20	26	1.98
40043430--40043781	141	2.5	139	80	7	363	22	30	20	26	1.98
40043422--40043785	94	3.9	94	78	8	355	22	29	20	26	1.98
40050823--40051137	47	6.7	47	74	15	199	23	28	19	28	1.98
40050823--40051134	141	2.2	139	81	8	337	23	28	19	28	1.98
40050869--40051182	94	3.4	94	80	10	313	23	28	18	28	1.98
40054558--40054624	27	2.8	24	74	24	68	25	2	0	71	1.00
40063419--40063471	23	2.4	22	76	20	56	9	18	1	69	1.25
40072668--40072834	46	3.6	45	78	9	149	23	27	20	28	1.99
40078800--40078838	19	2.1	19	100	0	78	25	25	0	48	1.51
40082314--40082358	23	2.0	23	82	8	56	40	13	8	37	1.76
40093433--40093498	15	4.3	15	83	14	66	77	0	4	18	0.94
40093438--40093500	20	3.0	20	78	17	74	77	0	3	19	0.90
40093442--40093500	27	2.2	27	85	11	77	77	0	3	18	0.90
40093438--40093496	10	5.8	10	75	16	59	77	0	3	18	0.90
40093433--40093476	8	5.7	7	84	12	52	77	0	4	18	0.94
40093745--40093775	7	4.6	7	96	4	55	41	0	58	0	0.98
40094186--40094237	20	2.6	20	90	6	79	15	44	25	15	1.85
40096898--40097461	94	6.0	94	96	0	993	29	11	19	39	1.87
40097493--40097553	24	2.5	24	86	5	79	22	14	29	32	1.94
40104995--40105276	94	3.0	94	96	0	501	30	10	19	39	1.85
40105304--40105367	24	2.7	24	85	4	85	21	15	29	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40108213--40108356	39	3.8	38	86	10	188	27	27	19	26	1.99
40108185--40108403	74	2.8	77	80	13	234	26	27	21	24	2.00
40108185--40108403	40	5.6	39	83	10	245	26	27	21	24	2.00
40112928--40113104	40	4.4	40	85	4	234	25	27	22	23	2.00
40120955--40121131	40	4.4	40	83	4	225	25	27	22	24	2.00
40128906--40129182	94	3.0	94	94	3	474	30	11	19	39	1.86
40129211--40129274	24	2.7	24	85	4	85	21	15	29	32	1.95
40132111--40132333	40	5.7	40	86	6	269	26	27	21	24	1.99
40132111--40132333	79	2.8	79	86	6	292	26	27	21	24	1.99
40140064--40140233	77	2.2	80	89	3	256	26	27	21	25	1.99
40140064--40140284	117	1.9	119	82	7	281	25	27	21	25	2.00
40140045--40140286	40	6.1	40	83	8	273	25	26	21	25	2.00
40148887--40148930	22	2.0	22	90	0	70	18	27	13	40	1.88
40151640--40151873	70	3.3	70	76	5	195	25	18	19	36	1.95
40175431--40175688	120	2.2	119	81	6	292	26	21	25	25	1.99
40175431--40175655	40	5.7	40	89	3	296	25	21	26	26	2.00
40179884--40180101	84	2.6	83	89	1	328	24	27	18	28	1.98
40186402--40186572	93	1.8	93	92	0	288	30	28	19	21	1.97
40186397--40186560	46	3.5	46	73	11	154	32	28	17	21	1.96
40192124--40192338	46	4.6	48	79	6	226	22	26	20	30	1.98
40192124--40192338	94	2.3	94	84	4	283	22	26	20	30	1.98
40191977--40192338	49	7.7	47	72	16	223	24	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40197114--40197139	12	2.2	12	100	0	52	57	15	11	15	1.65
40200328--40200362	18	2.0	17	88	5	52	14	34	0	51	1.42
40202283--40202342	30	2.0	30	83	0	75	30	23	8	38	1.84
40207832--40208050	79	2.8	78	84	0	276	32	20	13	33	1.92
40208028--40208165	40	3.5	40	80	0	114	37	19	11	31	1.88
40209793--40209870	28	2.8	28	77	14	81	53	2	0	43	1.14
40215962--40216049	46	1.9	46	92	0	149	26	19	29	25	1.98
40215972--40216089	46	2.5	46	85	8	141	27	17	28	25	1.98
40236349--40236443	27	3.6	27	85	1	102	26	16	18	37	1.92
40236423--40236867	27	16.6	27	77	9	298	31	10	20	38	1.85
40236401--40236867	54	8.8	53	79	6	365	31	10	19	39	1.85
40238078--40238156	25	3.1	25	83	8	97	25	18	21	34	1.96
40238088--40238156	25	2.7	25	88	2	102	23	21	24	30	1.99
40238223--40238259	10	3.7	10	92	7	58	32	18	10	37	1.86
40238203--40238253	21	2.4	21	86	0	66	29	19	11	39	1.87
40247900--40247972	25	2.9	25	89	0	110	23	21	24	30	1.99
40248038--40248074	10	3.7	10	92	7	58	32	18	10	37	1.86
40248004--40248068	21	3.0	21	81	2	67	32	16	12	38	1.86
40250040--40250128	28	3.2	28	77	0	97	23	34	17	23	1.96
40251555--40251663	43	2.6	42	76	5	112	32	18	22	26	1.97
40255672--40255798	47	2.7	47	80	0	137	32	29	15	22	1.95
40258146--40258176	11	2.8	11	100	0	62	58	16	25	0	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40267246--40267281	10	3.5	10	85	7	54	77	2	2	16	1.00
40267880--40267927	20	2.3	21	82	3	62	41	8	2	47	1.45
40267883--40268292	154	2.7	153	79	14	452	45	9	4	40	1.56
40267883--40268292	149	2.7	149	82	10	444	45	9	4	40	1.56
40269145--40269174	15	2.0	15	100	0	60	46	13	26	13	1.80
40269160--40269452	42	7.0	42	88	1	417	35	21	19	23	1.96
40269873--40269908	13	2.8	13	100	0	72	8	19	0	72	1.10
40274838--40274894	28	2.0	28	89	0	87	43	8	28	19	1.80
40274840--40274902	28	2.2	28	85	0	81	44	9	26	19	1.81
40276196--40276238	21	2.0	21	95	0	77	27	0	37	34	1.57
40276219--40276251	16	2.1	16	94	0	57	33	0	36	30	1.58
40276230--40276324	45	2.1	44	88	1	136	34	5	27	32	1.79
40276486--40276520	18	2.0	17	88	5	52	54	0	0	45	0.99
40276444--40276516	27	2.7	27	76	8	76	52	2	0	45	1.15
40276405--40276676	144	1.9	147	92	3	469	46	2	3	46	1.35
40276630--40276664	18	2.0	17	88	5	52	54	0	0	45	0.99
40282185--40282362	27	6.6	27	84	3	205	29	28	15	26	1.96
40282206--40282361	82	1.9	81	88	3	233	29	28	15	26	1.96
40290376--40290553	27	6.6	27	84	3	205	29	28	15	26	1.96
40290397--40290552	82	1.9	81	88	3	233	29	28	15	26	1.96
40294187--40294251	32	2.0	32	93	0	112	26	15	30	27	1.96
40303229--40303313	27	3.4	27	64	26	69	21	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40303209--40303333	47	2.7	47	94	0	214	21	20	28	29	1.98
40310045--40310095	20	2.5	20	93	0	84	29	21	17	31	1.96
40310946--40310982	14	2.6	15	83	12	51	37	5	0	56	1.22
40310948--40311010	21	3.1	21	77	8	60	39	4	0	55	1.21
40321360--40321586	107	2.1	109	90	4	354	41	6	7	44	1.58
40321415--40321617	52	3.8	52	71	8	158	43	7	5	43	1.55
40321584--40321646	24	2.6	25	92	2	110	52	14	0	33	1.42
40322866--40322974	54	2.0	54	98	0	209	38	20	12	28	1.89
40326237--40326508	134	2.0	134	95	0	490	25	18	17	37	1.93
40326669--40326702	15	2.3	15	100	0	68	50	20	17	11	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332