genome.fa.s13.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  142  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46541446--46541570	49	2.5	49	83	8	148	23	28	20	27	1.99
46545739--46545781	15	2.8	16	78	7	52	41	0	4	53	1.21
46553054--46553098	23	2.0	22	82	4	54	42	22	4	31	1.73
46556913--46557007	38	2.5	38	94	0	163	8	9	42	40	1.68
46560753--46560956	40	5.1	40	86	1	250	26	27	22	23	1.99
46577492--46577637	29	5.1	29	78	4	138	28	13	31	27	1.93
46586295--46586495	40	5.0	40	89	2	280	26	27	22	22	1.99
46594292--46594505	40	5.5	39	87	7	285	24	28	23	22	1.99
46594292--46594505	77	2.7	78	89	5	308	24	28	23	22	1.99
46607626--46607679	25	2.2	25	96	0	99	37	25	16	20	1.93
46608357--46608475	25	4.7	25	93	2	193	41	0	8	50	1.33
46615531--46615660	48	2.6	50	86	2	174	20	31	20	27	1.97
46624463--46624492	14	2.1	14	93	0	51	43	20	10	26	1.83
46625794--46625905	25	4.5	24	78	13	102	25	21	19	33	1.97
46625794--46625905	50	2.3	49	88	1	161	25	21	19	33	1.97
46641543--46641572	14	2.1	14	100	0	60	23	13	30	33	1.93
46645449--46645577	38	3.5	36	68	14	93	33	22	20	23	1.97
46659253--46659298	23	1.9	24	82	8	58	36	21	23	17	1.94
46664648--46664672	13	1.9	13	100	0	50	48	8	0	44	1.32
46671148--46671241	6	17.4	5	71	20	57	74	1	6	18	1.09
46671188--46671243	21	2.7	21	94	2	96	76	0	7	16	0.99
46674265--46674329	32	2.0	32	96	0	121	18	10	21	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46675880--46675904	13	1.9	13	100	0	50	48	8	0	44	1.32
46683679--46683896	40	5.5	40	91	1	307	23	22	27	25	2.00
46691732--46691935	40	5.1	41	87	5	276	23	22	27	26	1.99
46699317--46699410	32	2.8	32	75	13	84	27	25	20	26	1.99
46702554--46702579	6	4.3	6	100	0	52	69	0	30	0	0.89
46717950--46718165	40	5.4	40	84	2	267	23	24	27	24	2.00
46723704--46723786	41	2.0	41	100	0	166	37	19	24	19	1.94
46725918--46726132	40	5.4	40	84	2	256	21	23	29	25	1.99
46726892--46726924	16	2.0	17	88	5	50	57	0	9	33	1.30
46729205--46729327	55	2.2	56	88	2	176	26	12	28	33	1.92
46729205--46729327	28	4.4	28	90	2	176	26	12	28	33	1.92
46729230--46729340	28	4.0	27	90	3	116	28	11	26	33	1.91
46737367--46737490	27	4.5	26	80	8	113	25	12	29	32	1.93
46737395--46737490	27	3.6	26	92	5	156	26	12	29	32	1.93
46737367--46737490	54	2.2	56	88	2	180	25	12	29	32	1.93
46737395--46737503	27	4.0	27	87	7	114	28	11	26	33	1.92
46739098--46739178	41	2.0	41	92	4	137	37	19	22	20	1.95
46742279--46742312	17	2.0	17	88	11	52	58	0	8	32	1.29
46744545--46744668	28	4.4	27	84	9	108	26	12	28	33	1.92
46744571--46744668	28	3.5	28	95	1	171	26	12	28	32	1.92
46744571--46744681	28	4.0	27	90	3	116	28	11	26	33	1.91
46756570--46756809	40	6.0	40	76	13	212	23	22	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46756610--46756793	79	2.3	80	87	0	262	23	22	27	26	2.00
46756613--46756816	79	2.6	78	81	5	230	24	21	27	26	1.99
46779138--46779180	9	4.8	9	94	0	77	55	23	2	18	1.54
46779138--46779187	9	5.2	10	90	4	61	56	22	2	20	1.53
46782486--46782668	39	4.6	39	78	9	167	25	27	21	24	1.99
46790667--46790797	39	3.3	39	84	5	158	26	28	22	22	1.99
46790832--46790914	41	2.0	41	90	0	130	27	30	18	24	1.98
46792693--46792784	39	2.3	40	83	5	116	25	21	26	27	2.00
46795275--46795447	44	4.0	44	80	8	185	22	19	25	32	1.97
46795290--46795447	43	3.7	43	82	7	187	23	19	25	31	1.98
46799322--46799404	26	3.3	26	66	19	75	27	14	26	31	1.95
46799313--46799562	50	5.0	50	80	2	261	26	16	26	32	1.96
46799756--46799785	16	1.9	15	93	6	51	43	0	23	33	1.54
46806884--46806939	9	5.9	9	89	10	85	57	23	0	19	1.41
46806884--46806939	20	2.9	19	92	7	87	57	23	0	19	1.41
46807700--46807835	29	4.7	29	75	8	105	38	13	23	24	1.91
46807759--46807850	29	3.1	28	78	9	87	34	16	27	21	1.95
46812674--46812703	16	1.9	16	93	6	53	30	0	20	50	1.49
46815049--46815093	21	2.2	20	84	4	54	28	8	17	44	1.79
46816345--46816401	29	2.0	29	89	0	87	29	38	17	14	1.89
46827638--46827696	30	2.0	30	93	0	100	61	11	0	27	1.31
46831535--46831717	79	2.3	81	84	7	232	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46831536--46831719	40	4.6	40	83	9	216	23	22	28	25	2.00
46831588--46831752	79	2.1	79	84	6	210	25	21	27	25	1.99
46839604--46839786	79	2.3	81	84	7	232	24	22	27	25	2.00
46839605--46839788	40	4.6	40	83	9	216	23	22	28	25	2.00
46839657--46839821	79	2.1	79	84	6	210	25	21	27	25	1.99
46844331--46844391	30	2.0	30	83	0	77	42	4	21	31	1.74
46844925--46845096	67	2.7	64	76	7	186	29	17	29	23	1.97
46848729--46848999	47	5.8	46	75	14	204	29	17	28	24	1.97
46848831--46848993	46	3.5	44	76	15	159	28	17	28	25	1.97
46856277--46856446	46	3.6	46	75	12	143	28	18	31	22	1.97
46862428--46862584	38	4.1	38	87	6	201	22	22	24	29	1.99
46862428--46862584	76	2.0	78	87	2	228	22	22	24	29	1.99
46886336--46886376	22	1.9	22	90	5	66	17	26	43	12	1.84
46886527--46886593	28	2.4	28	97	0	125	16	40	20	22	1.91
46891558--46891583	7	3.7	7	100	0	52	46	30	11	11	1.76
46892440--46892467	12	2.3	12	100	0	56	39	17	7	35	1.78
46897059--46897086	12	2.3	12	100	0	56	32	7	17	42	1.77
46899045--46899188	40	3.6	40	85	5	184	23	25	25	25	2.00
46910387--46910528	40	3.6	40	89	2	216	24	22	26	26	2.00
46915970--46916084	27	4.3	26	75	11	79	34	19	24	21	1.96
46916009--46916083	28	2.7	28	83	2	89	32	17	26	24	1.97
46920524--46920638	47	2.4	47	88	0	185	44	21	16	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46924479--46924544	34	1.9	34	100	0	132	43	27	0	28	1.55
46926998--46928806	699	2.6	698	85	4	2175	27	20	17	35	1.94
46929832--46929881	24	2.0	25	92	3	84	32	0	18	50	1.47
46929842--46929889	24	2.1	24	81	11	57	29	2	16	52	1.56
46938423--46938453	15	2.1	15	100	0	62	25	25	12	35	1.92
46939813--46939930	39	3.0	39	79	9	134	31	25	20	22	1.98
46942940--46942971	15	2.1	15	94	0	55	59	6	6	28	1.46
46948293--46948332	20	2.0	20	85	0	53	40	22	0	37	1.54
46948528--46948771	55	4.6	53	79	10	234	22	24	17	36	1.95
46951569--46951661	35	2.7	34	85	3	123	31	21	12	34	1.91
46951840--46951949	48	2.3	49	87	1	150	20	18	20	40	1.92
46951840--46951960	49	2.5	48	86	1	152	22	18	19	40	1.91
46959620--46959737	62	1.9	62	85	3	166	31	17	27	23	1.97
46962720--46962784	34	1.9	33	84	9	87	20	24	26	29	1.99
46969779--46969825	20	2.3	21	79	17	55	6	31	14	46	1.70
46975766--46975860	25	3.8	25	70	5	84	24	17	24	33	1.96
46978549--46978724	46	3.8	45	75	10	158	22	19	28	28	1.98
46978546--46978715	93	1.8	93	90	0	277	22	20	29	28	1.98
46990999--46991033	18	1.9	18	88	0	52	42	20	0	37	1.52
46992863--46992963	43	2.3	43	96	0	184	29	31	19	18	1.96
46996656--46996825	43	4.0	43	72	11	143	28	13	25	31	1.94
46999119--46999268	27	5.6	27	72	9	117	39	17	10	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46999119--46999263	54	2.7	54	77	4	159	39	16	9	34	1.81
46999120--46999318	27	7.4	27	70	14	97	38	18	10	32	1.85
46999432--46999526	27	3.6	27	81	2	102	24	22	17	35	1.95
46999668--46999764	28	3.4	28	76	15	90	24	21	23	29	1.99
46999696--46999791	32	2.9	33	84	3	122	26	21	25	27	2.00
46999696--46999793	33	3.0	33	84	3	126	25	21	25	27	1.99
47003704--47003806	54	1.9	54	85	0	143	39	19	10	30	1.85
47003701--47003820	27	4.4	27	79	6	109	39	18	10	31	1.85
47003707--47003820	54	2.1	54	81	0	129	40	19	9	30	1.83
47003815--47003904	27	3.3	27	79	3	92	34	18	20	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332