genome.fa.s13.2.7.7.80.10.50.1000.270.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  270  of  332  ( 39766 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90335675--90335763	22	4.0	22	73	15	83	29	5	20	44	1.74
90335683--90335776	22	4.2	21	70	22	50	30	7	18	43	1.77
90335680--90335809	68	1.9	68	93	0	224	28	6	20	44	1.77
90336036--90336153	61	2.0	60	88	9	183	58	5	3	32	1.39
90336274--90336340	14	4.7	14	82	10	73	41	5	2	49	1.42
90336274--90336340	29	2.3	29	80	10	75	41	5	2	49	1.42
90340748--90340776	15	2.0	15	93	6	51	68	0	0	31	0.89
90346184--90346231	17	2.8	17	90	3	69	47	4	8	39	1.53
90356385--90356592	40	5.2	40	81	7	235	25	20	27	26	1.99
90356388--90356571	79	2.3	81	82	6	214	24	21	27	27	1.99
90356423--90356606	79	2.3	77	79	10	192	26	20	26	26	1.99
90359708--90359974	136	2.0	137	87	5	389	32	26	20	19	1.97
90360749--90360867	63	1.9	62	96	1	220	30	16	26	26	1.97
90360833--90360900	33	2.1	33	100	0	136	26	17	29	26	1.98
90361350--90361380	16	1.9	16	93	0	53	61	3	0	35	1.12
90369619--90369698	40	2.0	40	97	0	151	28	10	13	47	1.75
90371747--90371802	19	3.1	19	67	15	55	42	19	7	30	1.78
90379611--90379682	35	2.1	35	91	0	117	38	12	13	34	1.83
90380275--90380304	16	1.9	15	93	6	51	0	3	3	93	0.42
90380849--90380878	15	2.1	14	93	6	51	76	0	0	23	0.78
90384856--90384909	15	3.3	15	74	18	54	44	0	0	55	0.99
90384854--90384903	17	2.9	17	72	21	59	46	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90391324--90391362	18	2.2	17	86	13	53	38	0	0	61	0.96
90391479--90391559	29	2.8	29	98	0	153	49	13	11	25	1.75
90394513--90394560	24	2.0	25	83	4	62	25	14	20	39	1.91
90396035--90396140	25	4.2	26	92	6	175	34	25	5	33	1.80
90403152--90403261	26	4.2	26	91	0	175	38	22	5	33	1.77
90412936--90412981	24	2.0	24	86	4	67	34	23	23	17	1.96
90416008--90416039	14	2.3	14	100	0	64	31	0	21	46	1.52
90416654--90416835	42	4.3	42	86	6	208	29	29	20	20	1.98
90417304--90417407	23	4.5	23	90	0	172	42	20	1	35	1.63
90420562--90420692	64	2.1	62	87	5	183	58	10	8	22	1.58
90421256--90421337	27	3.0	26	77	18	78	56	0	3	40	1.17
90421687--90421730	21	2.1	21	82	0	52	38	43	2	15	1.60
90421714--90421765	15	3.5	15	78	5	61	46	32	0	21	1.52
90421790--90421852	19	3.3	19	95	2	108	22	4	6	66	1.33
90422219--90422269	21	2.4	22	77	6	61	49	21	1	27	1.60
90422403--90422446	14	3.2	13	81	12	52	40	40	0	18	1.50
90422711--90422752	23	1.9	23	85	9	61	21	0	26	52	1.47
90422725--90422757	16	2.1	16	88	5	50	15	0	33	51	1.43
90422809--90423067	41	6.4	41	85	4	328	18	23	23	35	1.96
90422809--90423067	81	3.2	81	86	4	353	18	23	23	35	1.96
90422850--90423098	81	3.1	78	79	12	229	17	21	24	36	1.94
90422809--90423067	122	2.1	122	88	2	387	18	23	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90435252--90435336	24	3.6	23	73	17	75	63	3	3	29	1.28
90435252--90435327	24	3.2	23	78	12	82	63	2	3	30	1.26
90436684--90436719	10	3.6	10	88	0	54	88	2	8	0	0.59
90436684--90436725	15	2.6	16	85	7	59	85	4	9	0	0.72
90438043--90438213	82	2.1	82	91	0	270	42	8	22	25	1.82
90439008--90439084	37	2.1	37	97	0	145	37	15	14	32	1.88
90441218--90441252	10	3.7	9	88	11	52	22	0	0	77	0.78
90441380--90441435	29	1.9	29	89	7	87	39	0	0	60	0.97
90441508--90441532	12	2.1	12	100	0	50	76	0	0	24	0.80
90441753--90441802	12	3.7	13	76	23	50	52	0	0	48	1.00
90441860--90441958	24	4.3	23	78	17	100	63	5	0	31	1.16
90441870--90441911	14	3.3	14	81	18	56	69	4	0	26	1.08
90442002--90442052	20	2.5	21	81	9	61	54	1	0	43	1.11
90442021--90442078	14	3.9	14	72	24	55	56	1	1	39	1.19
90442025--90442138	32	3.4	33	80	8	122	55	1	1	41	1.20
90442174--90442203	4	7.2	4	92	7	51	76	0	0	23	0.78
90442164--90442200	17	2.2	17	90	4	58	72	0	0	27	0.84
90442265--90442317	22	2.3	23	80	3	63	58	3	1	35	1.27
90442431--90442500	31	2.2	31	80	7	79	75	2	2	18	1.05
90442477--90442510	16	2.1	16	88	0	50	79	0	2	17	0.86
90442810--90442864	21	2.5	22	88	8	78	58	1	1	38	1.20
90447839--90447880	17	2.6	16	81	7	50	54	0	2	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90453203--90453231	14	2.1	14	100	0	58	72	6	6	13	1.26
90459910--90459963	8	6.8	8	75	8	56	53	0	3	42	1.18
90460905--90460936	6	5.3	6	92	0	55	18	21	15	43	1.87
90461787--90461836	20	2.5	20	90	0	73	20	38	30	12	1.88
90480231--90480343	25	4.6	25	75	7	97	23	24	23	29	1.99
90480231--90480327	50	1.9	50	91	0	158	23	24	22	28	1.99
90482774--90482823	25	2.0	24	85	14	66	34	10	8	48	1.66
90496529--90496579	25	2.0	26	88	3	77	31	15	0	52	1.43
90497494--90497532	17	2.2	18	86	4	53	41	0	0	58	0.98
90497509--90497596	5	18.2	5	75	17	71	37	2	1	59	1.18
90497668--90497706	17	2.3	17	86	8	53	23	2	5	69	1.21
90499134--90499185	26	2.0	26	88	0	77	32	15	13	38	1.86
90499370--90499457	40	2.2	41	83	8	117	47	11	9	31	1.71
90500294--90500401	26	4.2	26	91	0	180	33	7	23	36	1.83
90503112--90503142	16	2.0	16	93	6	55	58	12	3	25	1.50
90507417--90507524	26	4.2	26	93	0	189	32	7	24	36	1.83
90513306--90513365	17	3.5	17	74	21	63	65	0	1	33	1.03
90513838--90514039	17	11.3	18	88	6	288	36	15	10	36	1.83
90513838--90514039	53	3.8	53	92	5	302	36	15	10	36	1.83
90513829--90514031	89	2.3	89	95	1	363	37	15	11	35	1.83
90519248--90519314	18	3.5	18	67	15	53	29	4	10	55	1.53
90519244--90519326	40	2.0	41	97	2	159	32	6	9	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90523371--90523420	25	2.0	25	100	0	100	28	8	28	36	1.85
90525526--90525577	24	2.2	24	89	0	77	34	3	7	53	1.48
90542675--90542719	18	2.5	18	85	10	65	66	4	0	28	1.11
90542673--90542939	102	2.6	105	84	6	323	57	12	1	28	1.46
90542998--90543157	80	2.1	78	84	9	211	55	16	0	28	1.42
90550603--90550660	17	3.4	17	70	13	55	51	3	0	44	1.18
90556044--90556418	186	2.0	186	98	0	732	33	21	23	21	1.98
90563787--90563811	12	2.1	12	100	0	50	36	8	16	40	1.77
90564110--90564147	15	2.6	15	83	4	51	71	2	7	18	1.23
90566639--90566671	17	1.9	17	93	0	57	57	9	12	21	1.62
90567142--90567182	17	2.3	18	84	16	59	26	31	7	34	1.84
90577338--90577472	41	3.4	38	73	11	94	29	27	20	22	1.98
90578356--90578400	20	2.2	21	92	4	74	48	4	0	46	1.22
90585678--90585757	27	3.4	22	73	21	56	20	6	5	68	1.30
90587485--90587591	49	2.2	49	86	3	144	29	30	17	21	1.96
90592322--90592380	25	2.4	24	80	5	64	50	3	11	33	1.56
90592758--90593015	42	6.1	42	84	0	291	35	20	18	25	1.95
90594003--90594068	35	1.9	34	82	14	82	6	24	3	66	1.28
90595578--90595603	9	2.9	9	100	0	52	30	11	11	46	1.76
90628767--90628822	17	3.3	18	80	11	57	50	1	0	48	1.11
90628775--90628822	16	2.9	17	82	14	57	50	2	0	47	1.12
90634693--90634754	28	2.1	30	82	11	76	38	1	6	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90638149--90638325	50	3.5	50	92	0	291	35	16	22	25	1.94
90638301--90638480	31	5.8	31	90	2	272	26	19	28	26	1.99
90638641--90638755	42	2.7	43	89	4	171	30	15	26	27	1.96
90639397--90639447	23	2.2	23	96	0	93	41	7	17	33	1.79
90640263--90640332	21	3.5	21	77	15	94	70	8	14	7	1.34
90640254--90640331	38	2.1	38	97	2	149	71	7	12	7	1.29
90640366--90640447	41	2.0	42	87	4	121	29	12	3	54	1.54
90641259--90641305	4	11.5	4	78	13	51	17	0	8	74	1.05
90641248--90641305	16	3.5	16	79	13	55	17	3	8	70	1.26
90641262--90641301	20	2.0	20	90	9	64	15	0	10	75	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332