Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A13
Parameters: 2 7 7 80 10 50 1000
Length:  109233746

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   

This is table  14  of  332  ( 39766 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4082459--4082824
3
122.3
3
66
21
112
28
7
3
60
1.40
4082445--4082591
32
4.7
29
72
17
73
32
7
2
57
1.38
4082463--4082526
32
2.0
33
84
3
85
31
7
3
57
1.43
4082459--4082587
20
6.6
20
70
16
65
31
8
2
58
1.41
4082557--4082594
17
2.2
17
90
0
58
31
7
2
57
1.41
4082656--4082719
26
2.5
26
82
10
78
31
4
4
59
1.38
4082791--4082892
26
3.6
27
76
16
73
18
6
0
73
1.11
4082784--4082868
6
14.3
6
84
9
59
23
2
1
72
1.03
4085230--4085284
19
3.3
19
62
32
52
27
12
20
40
1.88
4085222--4085284
31
2.0
31
100
0
126
28
12
19
39
1.88
4106628--4106705
34
2.4
33
81
12
81
47
0
1
51
1.09
4118814--4119034
92
2.3
95
82
12
269
28
18
30
23
1.98
4118817--4119034
48
4.6
48
79
11
209
27
18
30
23
1.98
4130364--4130393
15
1.9
16
93
6
53
66
0
0
33
0.92
4131409--4131439
6
5.3
6
96
3
55
87
0
12
0
0.55
4152197--4152234
16
2.4
16
82
8
51
47
2
0
50
1.15
4156891--4156930
18
2.2
18
86
8
55
67
12
0
20
1.22
4157014--4157073
29
2.0
30
90
3
95
56
13
3
26
1.52
4163613--4163651
11
3.6
11
82
6
53
84
2
12
0
0.72
4163616--4163651
10
3.5
10
85
7
54
86
2
11
0
0.68
4167320--4167366
20
2.3
20
75
7
51
48
4
4
42
1.42
4181859--4181885
12
2.2
12
100
0
54
22
0
7
70
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4183810--4183835
4
6.5
4
100
0
52
76
0
0
23
0.78
4194453--4194495
22
2.0
22
86
8
63
30
0
6
62
1.21
4195437--4195468
16
1.9
17
93
6
57
62
3
25
9
1.40
4205512--4205541
2
14.5
2
93
6
51
46
0
3
50
1.18
4206256--4206307
20
2.6
20
88
11
72
30
0
9
59
1.29
4206242--4206308
20
3.2
20
78
18
66
34
0
7
58
1.26
4206250--4206320
20
3.6
20
75
17
60
30
0
8
60
1.26
4207145--4207180
18
2.0
18
94
0
63
58
0
0
41
0.98
4208924--4208977
26
2.1
26
85
0
72
29
7
12
50
1.68
4218335--4218399
9
7.2
9
94
0
103
40
29
9
21
1.84
4218335--4218412
27
2.8
27
88
3
102
41
28
8
21
1.83
4218938--4218989
5
10.4
5
100
0
104
40
0
21
38
1.53
4226102--4226164
31
2.0
31
84
6
83
42
1
3
52
1.27
4228677--4229005
179
1.8
177
85
3
464
45
14
15
24
1.84
4230338--4230608
144
1.9
143
80
0
317
27
22
14
35
1.93
4238536--4238573
14
2.7
14
100
0
76
15
21
13
50
1.78
4241909--4241954
22
2.2
22
84
7
60
26
0
4
69
1.07
4241925--4241984
26
2.4
24
83
8
75
28
0
3
68
1.05
4242047--4242138
41
2.2
41
100
0
184
19
26
32
21
1.97
4242228--4242397
54
3.2
53
81
5
200
36
14
25
23
1.93
4242228--4242417
53
3.6
51
82
5
200
35
15
25
23
1.94
4242228--4242433
54
3.9
52
80
8
145
34
15
26
23
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4253918--4253966
25
2.0
24
84
11
64
30
0
4
65
1.11
4257339--4257373
19
1.9
17
88
11
52
34
0
28
37
1.58
4260356--4260422
34
1.9
35
93
3
118
46
11
8
32
1.72
4260654--4260693
17
2.4
17
100
0
80
27
5
30
37
1.78
4264428--4264459
17
1.9
16
93
6
55
50
0
3
46
1.17
4272086--4272127
3
14.0
3
84
0
57
30
0
33
35
1.58
4276986--4277051
23
2.7
24
81
9
80
37
0
4
57
1.19
4277021--4277127
13
8.8
13
64
24
63
39
0
1
58
1.09
4277036--4277102
21
3.2
20
89
8
98
38
0
1
59
1.06
4277043--4277102
22
2.8
22
97
2
113
40
0
0
60
0.97
4277014--4277080
35
1.9
35
87
6
100
38
0
1
59
1.06
4277226--4277295
9
6.7
11
74
23
55
42
0
0
57
0.99
4277314--4277383
17
4.0
17
78
9
70
52
1
1
44
1.18
4277920--4277970
23
2.2
24
82
10
61
56
3
0
39
1.18
4277975--4278014
20
2.0
20
85
0
53
60
2
0
37
1.11
4278065--4278169
21
5.2
20
73
13
81
55
0
0
44
0.99
4278131--4278178
23
2.0
24
88
12
71
56
0
0
43
0.99
4278229--4278282
9
6.0
9
79
12
58
79
1
9
9
1.00
4278233--4278258
11
2.4
11
100
0
52
84
0
7
7
0.77
4278265--4278294
14
2.1
14
93
0
51
83
0
13
3
0.77
4280595--4280658
24
2.6
25
92
2
96
25
17
7
50
1.72
4280602--4280658
24
2.4
24
96
0
105
26
15
7
50
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4283592--4284053
127
3.6
126
85
4
547
36
19
14
29
1.92
4296218--4296261
20
2.1
21
87
4
63
40
2
2
54
1.25
4296206--4296264
19
3.1
19
78
11
57
35
1
1
61
1.16
4296221--4296283
29
2.2
29
82
5
74
42
1
1
53
1.19
4296495--4296544
22
2.2
23
82
10
59
44
6
10
40
1.63
4299064--4299420
21
16.7
21
77
10
294
22
59
5
12
1.53
4299070--4299420
45
8.2
42
78
11
327
21
60
5
12
1.53
4299210--4299354
3
45.3
3
68
22
57
24
62
4
8
1.42
4300604--4300648
19
2.4
19
85
10
65
31
20
0
48
1.49
4303316--4303387
21
3.4
21
84
0
90
29
56
2
11
1.48
4303354--4303412
24
2.5
24
86
5
75
23
57
5
13
1.56
4303335--4303670
21
15.7
21
68
5
154
24
54
7
14
1.65
4303338--4303708
129
2.9
126
89
2
503
23
54
7
14
1.65
4303378--4303770
63
6.2
63
88
2
520
21
55
7
15
1.64
4303485--4303537
24
2.2
24
82
0
61
18
60
7
13
1.56
4303698--4303976
21
13.5
21
77
6
203
16
61
6
15
1.54
4303377--4303708
129
2.6
127
92
1
531
23
54
7
14
1.65
4303698--4303955
41
6.3
41
82
4
243
16
61
6
15
1.54
4303674--4303976
62
4.9
61
78
8
240
16
60
7
15
1.56
4304790--4304822
12
2.6
13
90
4
50
45
0
6
48
1.27
4304991--4305437
190
2.4
190
81
7
523
42
6
9
41
1.62
4306815--4306869
26
2.1
26
90
6
85
16
23
21
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4306823--4306929
24
4.3
24
75
4
79
17
23
23
35
1.95
4309226--4309519
146
2.0
145
92
0
489
23
13
16
46
1.82
4315290--4315363
26
2.9
27
88
8
118
16
24
22
36
1.94
4318464--4318508
11
3.9
11
80
11
54
35
0
2
62
1.08
4320621--4320880
46
5.6
46
86
1
297
40
12
24
22
1.88
4322156--4322207
24
2.2
24
85
0
68
53
9
3
32
1.51
4326198--4326255
26
2.2
26
87
0
80
39
20
0
39
1.53
4326198--4326255
13
4.5
13
78
8
64
39
20
0
39
1.53
4327328--4327366
18
2.2
17
86
13
53
33
0
20
46
1.51
4327471--4327499
8
3.6
8
100
0
58
24
13
27
34
1.93
4327586--4327661
23
3.3
23
96
0
143
21
21
26
31
1.98
4334674--4334712
18
2.2
17
86
13
53
33
0
20
46
1.51
4334817--4334845
8
3.6
8
100
0
58
24
13
27
34
1.93
4334932--4335007
23
3.3
23
96
0
143
21
21
26
31
1.98
4338098--4338150
27
2.0
27
85
14
74
52
5
3
37
1.43
4338507--4338578
35
2.0
37
83
5
94
51
0
1
47
1.09
4356274--4356315
20
2.0
22
90
9
70
61
0
0
38
0.96
4363025--4363058
17
1.9
18
88
5
52
44
2
11
41
1.56
4363002--4363690
241
2.9
240
84
3
822
36
18
12
32
1.88
4368743--4368832
37
2.5
36
85
7
121
28
10
21
40
1.85
4369144--4369186
21
2.0
21
100
0
86
41
4
13
39
1.66
4372601--4372976
3
128.0
3
68
15
148
28
6
2
63
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4372673--4372749
14
5.7
13
70
18
50
32
6
2
58
1.37
4372685--4372728
17
2.6
18
85
10
65
29
4
0
65
1.12
4372615--4372781
54
3.2
53
79
9
175
29
5
2
62
1.30
4372858--4372902
14
2.8
17
70
19
51
31
4
0
64
1.13
4372858--4372968
34
3.3
35
71
15
90
26
7
0
65
1.24
4373225--4373265
6
6.5
6
91
8
64
19
2
0
78
0.87
4373225--4373265
13
3.2
13
86
6
57
19
2
0
78
0.87
4388085--4388164
4
19.8
4
74
7
63
66
3
25
5
1.29
4388926--4389036
47
2.4
47
84
6
154
25
16
23
35
1.95
4390477--4390531
24
2.3
24
78
15
60
27
5
1
65
1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332